data_DDA
#

_chem_comp.id                                   DDA
_chem_comp.name                                 beta-D-Olivopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose;
2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose;
2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.157
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DDA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1EKH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
 1  DDA  beta-D-Olivose                             PDB  ?  
 2  DDA  "2,6-dideoxy-beta-D-arabino-hexopyranose"  PDB  ?  
 3  DDA  "2,6-dideoxy-beta-D-glucopyranose"         PDB  ?  
 4  DDA  "2,6-dideoxy-beta-D-mannopyranose"         PDB  ?  
 5  DDA  2-deoxy-beta-D-quinovopyranose             PDB  ?  
 6  DDA  2-deoxy-beta-D-rhamnoopyranose             PDB  ?  
 7  DDA  D-Olivose                                  PDB  ?  
 8  DDA  Olivose                                    PDB  ?  
 9  DDA  "2,6-DIDEOXY-BETA-D-GLUCOSE"               PDB  ?  
10  DDA  "2,6-DIDEOXY-BETA-D-MANNOSE"               PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DDA  C1   C1   C  0  1  N  N  R   -6.293  -1.061   1.339  -1.670  -0.150   0.354  C1   DDA   1  
DDA  C2   C2   C  0  1  N  N  N   -7.109  -1.494   0.141  -0.862  -1.345  -0.162  C2   DDA   2  
DDA  C3   C3   C  0  1  N  N  R   -8.191  -0.491  -0.234   0.596  -1.196   0.284  C3   DDA   3  
DDA  C4   C4   C  0  1  N  N  S   -8.933   0.021   0.999   1.142   0.140  -0.229  C4   DDA   4  
DDA  C5   C5   C  0  1  N  N  R   -7.921   0.441   2.035   0.257   1.277   0.289  C5   DDA   5  
DDA  C6   C6   C  0  1  N  N  N   -8.521   0.972   3.289   0.760   2.609  -0.269  C6   DDA   6  
DDA  O5   O5   O  0  1  N  N  N   -7.219  -0.743   2.382  -1.090   1.061  -0.135  O5   DDA   7  
DDA  O1   O1   O  0  1  N  Y  N   -5.597  -2.222   1.779  -3.019  -0.253  -0.106  O1   DDA   8  
DDA  O3   O3   O  0  1  N  N  N   -9.204  -1.207  -0.985   1.372  -2.269  -0.254  O3   DDA   9  
DDA  O4   O4   O  0  1  N  N  N   -9.828   1.095   0.699   2.478   0.322   0.242  O4   DDA  10  
DDA  H1   H1   H  0  1  N  N  N   -5.622  -0.225   1.092  -1.656  -0.146   1.444  H1   DDA  11  
DDA  H21  H21  H  0  1  N  N  N   -6.433  -1.618  -0.718  -1.276  -2.267   0.246  H21  DDA  12  
DDA  H22  H22  H  0  1  N  N  N   -7.588  -2.457   0.372  -0.909  -1.373  -1.250  H22  DDA  13  
DDA  H3   H3   H  0  1  N  N  N   -7.767   0.345  -0.809   0.648  -1.217   1.373  H3   DDA  14  
DDA  H4   H4   H  0  1  N  N  N   -9.511  -0.819   1.413   1.135   0.141  -1.319  H4   DDA  15  
DDA  H5   H5   H  0  1  N  N  N   -7.239   1.188   1.602   0.296   1.300   1.378  H5   DDA  16  
DDA  H61  H61  H  0  1  N  N  N   -7.720   1.254   3.988   0.721   2.586  -1.357  H61  DDA  17  
DDA  H62  H62  H  0  1  N  N  N   -9.133   1.856   3.057   0.130   3.419   0.101  H62  DDA  18  
DDA  H63  H63  H  0  1  N  N  N   -9.154   0.198   3.749   1.788   2.773   0.054  H63  DDA  19  
DDA  HO1  HO1  H  0  1  N  Y  N   -5.065  -2.005   2.535  -3.589   0.472   0.184  HO1  DDA  20  
DDA  HO3  HO3  H  0  1  N  Y  N   -9.897  -0.607  -1.235   1.077  -3.146   0.025  HO3  DDA  21  
DDA  HO4  HO4  H  0  1  N  Y  N  -10.263   1.377   1.495   3.094  -0.366  -0.045  HO4  DDA  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DDA  C1  C2   SING  N  N   1  
DDA  C1  O5   SING  N  N   2  
DDA  C1  O1   SING  N  N   3  
DDA  C1  H1   SING  N  N   4  
DDA  C2  C3   SING  N  N   5  
DDA  C2  H21  SING  N  N   6  
DDA  C2  H22  SING  N  N   7  
DDA  C3  C4   SING  N  N   8  
DDA  C3  O3   SING  N  N   9  
DDA  C3  H3   SING  N  N  10  
DDA  C4  C5   SING  N  N  11  
DDA  C4  O4   SING  N  N  12  
DDA  C4  H4   SING  N  N  13  
DDA  C5  C6   SING  N  N  14  
DDA  C5  O5   SING  N  N  15  
DDA  C5  H5   SING  N  N  16  
DDA  C6  H61  SING  N  N  17  
DDA  C6  H62  SING  N  N  18  
DDA  C6  H63  SING  N  N  19  
DDA  O1  HO1  SING  N  N  20  
DDA  O3  HO3  SING  N  N  21  
DDA  O4  HO4  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DDA  SMILES            ACDLabs               12.01  "OC1C(OC(O)CC1O)C"  
DDA  InChI             InChI                 1.03   "InChI=1S/C6H12O4/c1-3-6(9)4(7)2-5(8)10-3/h3-9H,2H2,1H3/t3-,4-,5-,6-/m1/s1"  
DDA  InChIKey          InChI                 1.03   FDWRIIDFYSUTDP-KVTDHHQDSA-N  
DDA  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1O[C@@H](O)C[C@@H](O)[C@@H]1O"  
DDA  SMILES            CACTVS                3.385  "C[CH]1O[CH](O)C[CH](O)[CH]1O"  
DDA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@@H]1[C@H]([C@@H](C[C@@H](O1)O)O)O"  
DDA  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1C(C(CC(O1)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DDA  "SYSTEMATIC NAME"                      ACDLabs               12.01  "2,6-dideoxy-beta-D-arabino-hexopyranose"  
DDA  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "(2R,4R,5S,6R)-6-methyloxane-2,4,5-triol"  
DDA  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DOlib  
DDA  "COMMON NAME"                          GMML                  1.0    b-D-Olivopyranose  
DDA  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    "b-D-2,6-deoxy-Glcp"  
DDA  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Oli  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
DDA  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
DDA  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
DDA  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
DDA  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DDA  "Create component"          1999-07-08  RCSB  
DDA  "Modify descriptor"         2011-06-04  RCSB  
DDA  "Modify leaving atom flag"  2013-07-26  RCSB  
DDA  "Other modification"        2019-08-12  RCSB  
DDA  "Other modification"        2019-12-19  RCSB  
DDA  "Other modification"        2020-07-03  RCSB  
DDA  "Modify name"               2020-07-17  RCSB  
DDA  "Modify synonyms"           2020-07-17  RCSB  
##
