data_LKA
#

_chem_comp.id                                   LKA
_chem_comp.name                                 5-thio-alpha-D-mannopyranosylamine
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 N O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-THIO-A/B-D-MANNOPYRANOSYLAMINE; 5-thio-alpha-D-mannosylamine; 5-thio-D-mannosylamine; 5-thio-mannosylamine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-10-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       195.237
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LKA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1R33
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  LKA  5-THIO-A/B-D-MANNOPYRANOSYLAMINE  PDB  ?  
2  LKA  5-thio-alpha-D-mannosylamine      PDB  ?  
3  LKA  5-thio-D-mannosylamine            PDB  ?  
4  LKA  5-thio-mannosylamine              PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LKA  C5    C5    C  0  1  N  N  R  29.872  67.241   7.219   1.054   0.274   0.658  C5    LKA   1  
LKA  S5    S5    S  0  1  N  N  N  29.556  66.497   8.851   0.348   1.698  -0.219  S5    LKA   2  
LKA  C1    C1    C  0  1  N  N  S  30.917  65.319   9.159  -1.417   1.385   0.064  C1    LKA   3  
LKA  N1    N1    N  0  1  N  N  N  30.881  64.710  10.260  -1.705   1.465   1.503  N1    LKA   4  
LKA  C2    C2    C  0  1  N  N  S  32.364  66.064   9.120  -1.773  -0.010  -0.451  C2    LKA   5  
LKA  O2    O2    O  0  1  N  N  N  33.387  65.463   9.472  -1.390  -0.117  -1.824  O2    LKA   6  
LKA  C3    C3    C  0  1  N  N  S  32.474  66.846   7.667  -1.037  -1.071   0.364  C3    LKA   7  
LKA  O3    O3    O  0  1  N  N  N  33.650  66.243   6.970  -1.534  -2.363   0.012  O3    LKA   8  
LKA  C4    C4    C  0  1  N  N  S  31.392  66.761   6.767   0.463  -1.015   0.085  C4    LKA   9  
LKA  O4    O4    O  0  1  N  N  N  31.473  67.472   5.518   1.098  -2.140   0.695  O4    LKA  10  
LKA  C6    C6    C  0  1  N  N  N  28.902  66.843   6.584   2.573   0.264   0.477  C6    LKA  11  
LKA  O6    O6    O  0  1  N  N  N  27.637  67.124   6.848   2.888   0.053  -0.901  O6    LKA  12  
LKA  H5    H5    H  0  1  N  N  N  29.923  68.349   7.105   0.815   0.345   1.719  H5    LKA  13  
LKA  H1    H1    H  0  1  N  N  N  30.779  64.576   8.340  -2.009   2.131  -0.467  H1    LKA  14  
LKA  HN11  HN11  H  0  0  N  N  N  29.983  64.237  10.365  -1.455   2.397   1.797  HN11  LKA  15  
LKA  HN12  HN12  H  0  0  N  N  N  31.641  64.052  10.432  -2.706   1.387   1.603  HN12  LKA  16  
LKA  H2    H2    H  0  1  N  N  N  32.358  66.774   9.980  -2.848  -0.167  -0.362  H2    LKA  17  
LKA  HO2   HO2   H  0  1  N  N  N  34.231  65.898   9.449  -1.875   0.568  -2.304  HO2   LKA  18  
LKA  H3    H3    H  0  1  N  N  N  32.528  67.929   7.928  -1.212  -0.894   1.425  H3    LKA  19  
LKA  HO3   HO3   H  0  1  N  N  N  33.713  66.692   6.135  -2.482  -2.359   0.202  HO3   LKA  20  
LKA  H4    H4    H  0  1  N  N  N  31.515  65.654   6.710   0.632  -1.043  -0.991  H4    LKA  21  
LKA  HO4   HO4   H  0  1  N  N  N  32.344  67.197   5.259   0.698  -2.931   0.308  HO4   LKA  22  
LKA  H61   H61   H  0  1  N  N  N  28.979  65.731   6.553   2.984   1.221   0.800  H61   LKA  23  
LKA  H62   H62   H  0  1  N  N  N  29.076  67.138   5.523   3.006  -0.538   1.075  H62   LKA  24  
LKA  HO6   HO6   H  0  1  N  N  N  26.885  66.816   6.356   3.852   0.054  -0.971  HO6   LKA  25  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LKA  C5  S5    SING  N  N   1  
LKA  C5  C4    SING  N  N   2  
LKA  C5  C6    SING  N  N   3  
LKA  C5  H5    SING  N  N   4  
LKA  S5  C1    SING  N  N   5  
LKA  C1  N1    SING  N  N   6  
LKA  C1  C2    SING  N  N   7  
LKA  C1  H1    SING  N  N   8  
LKA  N1  HN11  SING  N  N   9  
LKA  N1  HN12  SING  N  N  10  
LKA  C2  O2    SING  N  N  11  
LKA  C2  C3    SING  N  N  12  
LKA  C2  H2    SING  N  N  13  
LKA  O2  HO2   SING  N  N  14  
LKA  C3  O3    SING  N  N  15  
LKA  C3  C4    SING  N  N  16  
LKA  C3  H3    SING  N  N  17  
LKA  O3  HO3   SING  N  N  18  
LKA  C4  O4    SING  N  N  19  
LKA  C4  H4    SING  N  N  20  
LKA  O4  HO4   SING  N  N  21  
LKA  C6  O6    SING  N  N  22  
LKA  C6  H61   SING  N  N  23  
LKA  C6  H62   SING  N  N  24  
LKA  O6  HO6   SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LKA  SMILES            ACDLabs               10.04  "OC1C(O)C(SC(N)C1O)CO"  
LKA  SMILES_CANONICAL  CACTVS                3.341  "N[C@H]1S[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O"  
LKA  SMILES            CACTVS                3.341  "N[CH]1S[CH](CO)[CH](O)[CH](O)[CH]1O"  
LKA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](S1)N)O)O)O)O"  
LKA  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(S1)N)O)O)O)O"  
LKA  InChI             InChI                 1.03   "InChI=1S/C6H13NO4S/c7-6-5(11)4(10)3(9)2(1-8)12-6/h2-6,8-11H,1,7H2/t2-,3-,4+,5+,6+/m1/s1"  
LKA  InChIKey          InChI                 1.03   FGVRMLQUWLZGLJ-PQMKYFCFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LKA  "SYSTEMATIC NAME"  ACDLabs               10.04  5-thio-alpha-D-mannopyranosylamine  
LKA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,4S,5S,6R)-2-amino-6-(hydroxymethyl)thiane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LKA  "CARBOHYDRATE ISOMER"                  D       PDB  ?  
LKA  "CARBOHYDRATE ANOMER"                  alpha   PDB  ?  
LKA  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose  PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LKA  "Create component"          2003-10-07  RCSB  
LKA  "Modify descriptor"         2011-06-04  RCSB  
LKA  "Modify atom id"            2020-05-04  RCSB  
LKA  "Other modification"        2020-07-03  RCSB  
LKA  "Modify name"               2020-07-17  RCSB  
LKA  "Modify synonyms"           2020-07-17  RCSB  
LKA  "Modify internal type"      2020-07-17  RCSB  
LKA  "Modify linking type"       2020-07-17  RCSB  
LKA  "Modify component atom id"  2020-07-17  RCSB  
##
