data_PDA
#

_chem_comp.id                                   PDA
_chem_comp.name                                 "2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H17 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        PYRIDOXYL-ALANINE-5-PHOSPHATE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       320.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PDA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1ELU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PDA  N     N     N  0  1  N  N  N  -32.096   7.931  -21.042  -0.869   0.148   1.991  N     PDA   1  
PDA  N1    N1    N  0  1  Y  N  N  -34.714   9.516  -25.193   3.608   0.630  -0.016  N1    PDA   2  
PDA  C2    C2    C  0  1  Y  N  N  -33.695  10.134  -24.416   3.541   0.325   1.264  C2    PDA   3  
PDA  C2A   C2A   C  0  1  N  N  N  -33.237  11.473  -24.966   4.743   0.542   2.146  C2A   PDA   4  
PDA  C3    C3    C  0  1  Y  N  N  -33.202   9.466  -23.172   2.376  -0.194   1.807  C3    PDA   5  
PDA  O3A   O3A   O  0  1  N  N  N  -32.373  10.086  -22.358   2.311  -0.507   3.128  O3A   PDA   6  
PDA  C4    C4    C  0  1  Y  N  N  -33.765   8.160  -22.788   1.273  -0.389   0.981  C4    PDA   7  
PDA  C4A   C4A   C  0  1  N  N  N  -33.223   7.465  -21.712  -0.012  -0.951   1.530  C4A   PDA   8  
PDA  C5    C5    C  0  1  Y  N  N  -34.833   7.580  -23.648   1.389  -0.061  -0.359  C5    PDA   9  
PDA  C5A   C5A   C  0  1  N  N  N  -35.525   6.206  -23.345   0.223  -0.254  -1.294  C5A   PDA  10  
PDA  OP4   OP4   O  0  1  N  N  N  -36.438   6.256  -22.272   0.592   0.168  -2.608  OP4   PDA  11  
PDA  P     P     P  0  1  N  N  N  -37.663   5.255  -22.237  -0.692  -0.064  -3.550  P     PDA  12  
PDA  OP1   OP1   O  0  1  N  N  N  -37.280   3.903  -21.761  -1.828   0.734  -3.041  OP1   PDA  13  
PDA  OP2   OP2   O  0  1  N  N  N  -38.208   5.121  -23.620  -0.345   0.392  -5.054  OP2   PDA  14  
PDA  OP3   OP3   O  0  1  N  N  N  -38.551   5.943  -21.326  -1.087  -1.625  -3.541  OP3   PDA  15  
PDA  C6    C6    C  0  1  Y  N  N  -35.289   8.295  -24.851   2.582   0.456  -0.826  C6    PDA  16  
PDA  CA    CA    C  0  1  N  N  S  -31.469   7.238  -20.004  -2.099  -0.463   2.511  CA    PDA  17  
PDA  CB    CB    C  0  1  N  N  N  -31.752   5.875  -19.664  -1.930  -0.760   4.003  CB    PDA  18  
PDA  C     C     C  0  1  N  N  N  -30.487   7.963  -19.268  -3.254   0.484   2.316  C     PDA  19  
PDA  O     O     O  0  1  N  N  N  -29.765   7.377  -18.312  -4.486   0.133   2.719  O     PDA  20  
PDA  OXT   OXT   O  0  1  N  N  N  -30.329   9.227  -19.550  -3.072   1.560   1.797  OXT   PDA  21  
PDA  HN    HN    H  0  1  N  N  N  -32.318   8.862  -20.690  -1.132   0.675   1.171  HN    PDA  22  
PDA  H2A1  1H2A  H  0  0  N  N  N  -32.438  11.957  -24.357   5.359  -0.356   2.149  H2A1  PDA  23  
PDA  H2A2  2H2A  H  0  0  N  N  N  -32.915  11.372  -26.028   5.327   1.381   1.765  H2A2  PDA  24  
PDA  H2A3  3H2A  H  0  0  N  N  N  -34.103  12.161  -25.097   4.414   0.760   3.162  H2A3  PDA  25  
PDA  HOA   HOA   H  0  1  N  N  N  -32.059   9.661  -21.567   2.592  -1.429   3.211  HOA   PDA  26  
PDA  H4A1  1H4A  H  0  0  N  N  N  -33.017   6.421  -22.045   0.208  -1.614   2.367  H4A1  PDA  27  
PDA  H4A2  2H4A  H  0  0  N  N  N  -34.031   7.311  -20.959  -0.527  -1.510   0.749  H4A2  PDA  28  
PDA  H5A1  1H5A  H  0  0  N  N  N  -36.016   5.802  -24.261  -0.053  -1.308  -1.316  H5A1  PDA  29  
PDA  H5A2  2H5A  H  0  0  N  N  N  -34.762   5.410  -23.176  -0.623   0.337  -0.946  H5A2  PDA  30  
PDA  HO2   HO2   H  0  1  N  N  N  -38.943   4.520  -23.599  -1.139   0.236  -5.584  HO2   PDA  31  
PDA  HO3   HO3   H  0  1  N  N  N  -39.286   5.342  -21.305  -0.322  -2.109  -3.880  HO3   PDA  32  
PDA  H6    H6    H  0  1  N  N  N  -36.081   7.906  -25.512   2.677   0.719  -1.870  H6    PDA  33  
PDA  HA    HA    H  0  1  N  N  N  -32.153   6.374  -20.172  -2.297  -1.392   1.976  HA    PDA  34  
PDA  HB1   1HB   H  0  1  N  N  N  -31.251   5.321  -18.835  -1.732   0.167   4.538  HB1   PDA  35  
PDA  HB2   2HB   H  0  1  N  N  N  -32.850   5.803  -19.488  -2.842  -1.215   4.389  HB2   PDA  36  
PDA  HB3   3HB   H  0  1  N  N  N  -31.613   5.271  -20.591  -1.094  -1.446   4.144  HB3   PDA  37  
PDA  HO    HO    H  0  1  N  N  N  -29.110   7.860  -17.821  -5.227   0.742   2.594  HO    PDA  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PDA  N    C4A   SING  N  N   1  
PDA  N    CA    SING  N  N   2  
PDA  N    HN    SING  N  N   3  
PDA  N1   C2    DOUB  Y  N   4  
PDA  N1   C6    SING  Y  N   5  
PDA  C2   C2A   SING  N  N   6  
PDA  C2   C3    SING  Y  N   7  
PDA  C2A  H2A1  SING  N  N   8  
PDA  C2A  H2A2  SING  N  N   9  
PDA  C2A  H2A3  SING  N  N  10  
PDA  C3   O3A   SING  N  N  11  
PDA  C3   C4    DOUB  Y  N  12  
PDA  O3A  HOA   SING  N  N  13  
PDA  C4   C4A   SING  N  N  14  
PDA  C4   C5    SING  Y  N  15  
PDA  C4A  H4A1  SING  N  N  16  
PDA  C4A  H4A2  SING  N  N  17  
PDA  C5   C5A   SING  N  N  18  
PDA  C5   C6    DOUB  Y  N  19  
PDA  C5A  OP4   SING  N  N  20  
PDA  C5A  H5A1  SING  N  N  21  
PDA  C5A  H5A2  SING  N  N  22  
PDA  OP4  P     SING  N  N  23  
PDA  P    OP1   DOUB  N  N  24  
PDA  P    OP2   SING  N  N  25  
PDA  P    OP3   SING  N  N  26  
PDA  OP2  HO2   SING  N  N  27  
PDA  OP3  HO3   SING  N  N  28  
PDA  C6   H6    SING  N  N  29  
PDA  CA   CB    SING  N  N  30  
PDA  CA   C     SING  N  N  31  
PDA  CA   HA    SING  N  N  32  
PDA  CB   HB1   SING  N  N  33  
PDA  CB   HB2   SING  N  N  34  
PDA  CB   HB3   SING  N  N  35  
PDA  C    O     SING  N  N  36  
PDA  C    OXT   DOUB  N  N  37  
PDA  O    HO    SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PDA  SMILES            ACDLabs               10.04  "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)C"  
PDA  SMILES_CANONICAL  CACTVS                3.341  "C[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"  
PDA  SMILES            CACTVS                3.341  "C[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"  
PDA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)C(=O)O)O"  
PDA  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)C(=O)O)O"  
PDA  InChI             InChI                 1.03   "InChI=1S/C11H17N2O7P/c1-6-10(14)9(4-13-7(2)11(15)16)8(3-12-6)5-20-21(17,18)19/h3,7,13-14H,4-5H2,1-2H3,(H,15,16)(H2,17,18,19)/t7-/m0/s1"  
PDA  InChIKey          InChI                 1.03   WACJCHFWJNNBPR-ZETCQYMHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PDA  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-alanine"  
PDA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PDA  "Create component"   1999-07-08  EBI   
PDA  "Modify descriptor"  2011-06-04  RCSB  
PDA  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PDA
_pdbx_chem_comp_synonyms.name        PYRIDOXYL-ALANINE-5-PHOSPHATE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
