data_4DB
# 
_chem_comp.id                                    4DB 
_chem_comp.name                                  "(2S)-2-amino-4-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]butanoic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C14 H17 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        291.302 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4DB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JXT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4DB C    C    C 0 1 N N N Y N Y 5.883  -15.733 -8.216  5.148  0.092  -0.921 C    4DB 1  
4DB N    N    N 0 1 N N N Y Y N 7.885  -16.178 -9.560  4.519  1.360  1.054  N    4DB 2  
4DB O    O    O 0 1 N N N Y N Y 5.560  -14.865 -9.014  5.562  1.130  -1.378 O    4DB 3  
4DB CA   CA   C 0 1 N N S Y N N 7.282  -16.305 -8.244  4.303  0.102  0.327  CA   4DB 4  
4DB CB   CB   C 0 1 N N N N N N 8.253  -15.544 -7.347  2.827  -0.019 -0.055 CB   4DB 5  
4DB CAD  CAD  C 0 1 N N N N N N 11.243 -18.552 0.118   -6.299 -0.185 -0.905 CAD  4DB 6  
4DB CAE  CAE  C 0 1 N N N N N N 9.866  -20.652 0.274   -5.289 2.111  -0.521 CAE  4DB 7  
4DB CAF  CAF  C 0 1 Y N N N N N 8.383  -19.793 -1.918  -3.789 -1.318 -0.317 CAF  4DB 8  
4DB CAG  CAG  C 0 1 Y N N N N N 7.610  -19.402 -3.016  -2.573 -1.914 -0.039 CAG  4DB 9  
4DB CAH  CAH  C 0 1 Y N N N N N 9.713  -17.771 -2.066  -2.825 0.867  0.050  CAH  4DB 10 
4DB CAI  CAI  C 0 1 Y N N N N N 9.424  -18.987 -1.449  -3.920 0.065  -0.276 CAI  4DB 11 
4DB CAJ  CAJ  C 0 1 N N N N N N 7.376  -17.482 -4.703  -0.070 -1.414 0.624  CAJ  4DB 12 
4DB CAK  CAK  C 0 1 N N N N N N 8.939  -16.285 -4.001  -0.268 0.795  0.690  CAK  4DB 13 
4DB CAL  CAL  C 0 1 Y N N N N N 7.910  -18.187 -3.621  -1.475 -1.127 0.281  CAL  4DB 14 
4DB CAM  CAM  C 0 1 Y N N N N N 8.938  -17.393 -3.156  -1.604 0.278  0.323  CAM  4DB 15 
4DB NAN  NAN  N 0 1 N N N N N N 10.160 -19.386 -0.379  -5.147 0.653  -0.562 NAN  4DB 16 
4DB NAO  NAO  N 0 1 N N N N N N 7.997  -16.321 -4.955  0.565  -0.250 0.847  NAO  4DB 17 
4DB OAP  OAP  O 0 1 N N N N N N 6.386  -17.903 -5.405  0.431  -2.519 0.693  OAP  4DB 18 
4DB OAQ  OAQ  O 0 1 N N N N N N 9.767  -15.312 -3.880  0.027  1.965  0.827  OAQ  4DB 19 
4DB CAR  CAR  C 0 1 N N N N N N 7.691  -15.300 -5.962  1.979  -0.134 1.213  CAR  4DB 20 
4DB OXT  OXT  O 0 1 N Y N Y N Y 4.969  -16.459 -7.503  5.435  -1.071 -1.528 OXT  4DB 21 
4DB H    HN   H 0 1 N N N Y Y N 8.807  -16.565 -9.543  5.473  1.434  1.374  HN   4DB 22 
4DB H2   HNA  H 0 1 N Y N Y Y N 7.329  -16.670 -10.230 4.266  2.155  0.485  HNA  4DB 23 
4DB HA   HA   H 0 1 N N N Y N N 7.146  -17.348 -7.921  4.584  -0.737 0.963  HA   4DB 24 
4DB HB   HB   H 0 1 N N N N N N 9.175  -16.136 -7.250  2.523  0.865  -0.617 HB   4DB 25 
4DB HBA  HBA  H 0 1 N N N N N N 8.468  -14.571 -7.812  2.682  -0.907 -0.670 HBA  4DB 26 
4DB HAD  HAD  H 0 1 N N N N N N 11.317 -17.642 -0.495  -6.517 -0.859 -0.077 HAD  4DB 27 
4DB HADA HADA H 0 0 N N N N N N 11.042 -18.274 1.163   -7.165 0.449  -1.095 HADA 4DB 28 
4DB HADB HADB H 0 0 N N N N N N 12.190 -19.109 0.062   -6.071 -0.767 -1.798 HADB 4DB 29 
4DB HAE  HAE  H 0 1 N N N N N N 9.022  -21.141 -0.235  -5.067 2.526  -1.504 HAE  4DB 30 
4DB HAEA HAEA H 0 0 N N N N N N 10.751 -21.304 0.225   -6.310 2.369  -0.240 HAEA 4DB 31 
4DB HAEB HAEB H 0 0 N N N N N N 9.603  -20.469 1.326   -4.595 2.523  0.212  HAEB 4DB 32 
4DB HAF  HAF  H 0 1 N N N N N N 8.173  -20.731 -1.426  -4.642 -1.931 -0.571 HAF  4DB 33 
4DB HAG  HAG  H 0 1 N N N N N N 6.806  -20.024 -3.382  -2.478 -2.989 -0.072 HAG  4DB 34 
4DB HAH  HAH  H 0 1 N N N N N N 10.515 -17.142 -1.708  -2.928 1.941  0.080  HAH  4DB 35 
4DB HAR  HAR  H 0 1 N N N N N N 8.109  -14.348 -5.602  2.283  -1.017 1.774  HAR  4DB 36 
4DB HARA HARA H 0 0 N N N N N N 6.596  -15.250 -6.056  2.123  0.755  1.828  HARA 4DB 37 
4DB HXT  HOXT H 0 0 N Y N Y N Y 4.091  -16.177 -7.733  5.977  -1.026 -2.327 HOXT 4DB 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4DB O   C    DOUB N N 1  
4DB CA  C    SING N N 2  
4DB C   OXT  SING N N 3  
4DB N   CA   SING N N 4  
4DB N   H    SING N N 5  
4DB N   H2   SING N N 6  
4DB CA  CB   SING N N 7  
4DB CA  HA   SING N N 8  
4DB CB  CAR  SING N N 9  
4DB CB  HB   SING N N 10 
4DB CB  HBA  SING N N 11 
4DB NAN CAD  SING N N 12 
4DB CAD HAD  SING N N 13 
4DB CAD HADA SING N N 14 
4DB CAD HADB SING N N 15 
4DB NAN CAE  SING N N 16 
4DB CAE HAE  SING N N 17 
4DB CAE HAEA SING N N 18 
4DB CAE HAEB SING N N 19 
4DB CAG CAF  DOUB Y N 20 
4DB CAF CAI  SING Y N 21 
4DB CAF HAF  SING N N 22 
4DB CAL CAG  SING Y N 23 
4DB CAG HAG  SING N N 24 
4DB CAM CAH  SING Y N 25 
4DB CAH CAI  DOUB Y N 26 
4DB CAH HAH  SING N N 27 
4DB CAI NAN  SING N N 28 
4DB OAP CAJ  DOUB N N 29 
4DB NAO CAJ  SING N N 30 
4DB CAJ CAL  SING N N 31 
4DB NAO CAK  SING N N 32 
4DB CAK OAQ  DOUB N N 33 
4DB CAK CAM  SING N N 34 
4DB CAL CAM  DOUB Y N 35 
4DB CAR NAO  SING N N 36 
4DB CAR HAR  SING N N 37 
4DB CAR HARA SING N N 38 
4DB OXT HXT  SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4DB SMILES           ACDLabs              11.02 "O=C(O)C(N)CCN2C(=O)c1ccc(cc1C2=O)N(C)C"                                                                                        
4DB SMILES_CANONICAL CACTVS               3.352 "CN(C)c1ccc2C(=O)N(CC[C@H](N)C(O)=O)C(=O)c2c1"                                                                                  
4DB SMILES           CACTVS               3.352 "CN(C)c1ccc2C(=O)N(CC[CH](N)C(O)=O)C(=O)c2c1"                                                                                   
4DB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN(C)c1ccc2c(c1)C(=O)N(C2=O)CC[C@@H](C(=O)O)N"                                                                                 
4DB SMILES           "OpenEye OEToolkits" 1.7.0 "CN(C)c1ccc2c(c1)C(=O)N(C2=O)CCC(C(=O)O)N"                                                                                      
4DB InChI            InChI                1.03  "InChI=1S/C14H17N3O4/c1-16(2)8-3-4-9-10(7-8)13(19)17(12(9)18)6-5-11(15)14(20)21/h3-4,7,11H,5-6,15H2,1-2H3,(H,20,21)/t11-/m0/s1" 
4DB InChIKey         InChI                1.03  PYWIWJYKCYMUMG-NSHDSACASA-N                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4DB "SYSTEMATIC NAME" ACDLabs              11.02 "(2S)-2-amino-4-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]butanoic acid" 
4DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-4-[5-(dimethylamino)-1,3-dioxo-isoindol-2-yl]butanoic acid"               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4DB "Create component"     2009-09-23 RCSB 
4DB "Modify aromatic_flag" 2011-06-04 RCSB 
4DB "Modify descriptor"    2011-06-04 RCSB 
4DB "Modify backbone"      2023-11-03 PDBE 
4DB "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4DB 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
