data_5EB
# 
_chem_comp.id                                    5EB 
_chem_comp.name                                  "ethyl (2Z,4S)-4-{[N-(3-cyclopropylpropanoyl)-L-phenylalanyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H35 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.573 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5EB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DP6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5EB C2  C1  C 0 1 N N S N N N -26.007 14.012 -19.716 -1.053 0.029  0.679  C2  5EB 1  
5EB C3  C2  C 0 1 N N N N N N -27.505 14.152 -19.497 -1.226 -1.489 0.757  C3  5EB 2  
5EB C4  C3  C 0 1 Y N N N N N -28.160 15.114 -20.445 -2.644 -1.814 1.148  C4  5EB 3  
5EB C5  C4  C 0 1 Y N N N N N -27.527 15.630 -21.531 -2.983 -1.933 2.483  C5  5EB 4  
5EB C6  C5  C 0 1 Y N N N N N -28.238 16.519 -22.319 -4.286 -2.226 2.842  C6  5EB 5  
5EB C7  C6  C 0 1 Y N N N N N -29.549 16.898 -22.139 -5.249 -2.398 1.866  C7  5EB 6  
5EB N1  N1  N 0 1 N N N N N N -21.873 9.876  -17.740 4.727  3.524  -0.671 N1  5EB 7  
5EB N2  N2  N 0 1 N N N N N N -25.749 12.745 -20.375 -1.884 0.561  -0.404 N2  5EB 8  
5EB C8  C7  C 0 1 Y N N N N N -30.202 16.370 -21.059 -4.911 -2.277 0.531  C8  5EB 9  
5EB O21 O1  O 0 1 N N N N N N -27.238 12.811 -21.962 -3.659 0.670  0.923  O21 5EB 10 
5EB C20 C8  C 0 1 N N N N N N -26.317 12.254 -21.391 -3.181 0.850  -0.177 C20 5EB 11 
5EB C22 C9  C 0 1 N N N N N N -25.724 10.926 -21.744 -4.037 1.396  -1.291 C22 5EB 12 
5EB C23 C10 C 0 1 N N N N N N -26.742 10.075 -22.419 -5.456 1.637  -0.773 C23 5EB 13 
5EB C27 C11 C 0 1 N N N N N N -26.402 9.759  -23.858 -6.325 2.191  -1.903 C27 5EB 14 
5EB C21 C12 C 0 1 N N N N N N -24.945 9.587  -24.260 -7.755 2.608  -1.556 C21 5EB 15 
5EB C24 C13 C 0 1 N N N N N N -25.720 10.857 -24.648 -7.504 1.337  -2.372 C24 5EB 16 
5EB C9  C14 C 0 1 Y N N N N N -29.497 15.488 -20.227 -3.608 -1.986 0.172  C9  5EB 17 
5EB C17 C15 C 0 1 N N N N N N -25.299 13.920 -18.429 0.393  0.357  0.409  C17 5EB 18 
5EB O4  O2  O 0 1 N N N N N N -25.897 13.524 -17.447 0.699  0.973  -0.590 O4  5EB 19 
5EB N   N3  N 0 1 N N N N N N -24.085 14.242 -18.439 1.347  -0.036 1.277  N   5EB 20 
5EB C10 C16 C 0 1 N N S N N N -23.269 14.141 -17.243 2.760  0.185  0.961  C10 5EB 21 
5EB C14 C17 C 0 1 N N N N N N -22.716 15.490 -16.890 3.597  -0.869 1.639  C14 5EB 22 
5EB C15 C18 C 0 1 N N N N N N -23.711 16.352 -16.229 4.141  -1.849 0.923  C15 5EB 23 
5EB C16 C19 C 0 1 N N N N N N -24.417 15.729 -15.095 3.637  -2.141 -0.426 C16 5EB 24 
5EB O2  O3  O 0 1 N N N N N N -25.654 15.121 -15.395 4.270  -3.043 -1.202 O2  5EB 25 
5EB C18 C20 C 0 1 N N N N N N -26.878 15.741 -14.903 3.716  -3.281 -2.523 C18 5EB 26 
5EB C19 C21 C 0 1 N N N N N N -26.757 16.344 -13.495 4.562  -4.328 -3.250 C19 5EB 27 
5EB O3  O4  O 0 1 N N N N N N -24.041 15.762 -13.951 2.649  -1.569 -0.842 O3  5EB 28 
5EB C11 C22 C 0 1 N N N N N N -22.100 13.256 -17.646 3.184  1.569  1.457  C11 5EB 29 
5EB C12 C23 C 0 1 N N S N N N -22.544 11.994 -18.352 4.608  1.867  0.983  C12 5EB 30 
5EB C26 C24 C 0 1 N N N N N N -23.728 11.344 -17.645 5.153  3.150  1.659  C26 5EB 31 
5EB C25 C25 C 0 1 N N N N N N -23.233 9.961  -17.210 4.793  4.230  0.614  C25 5EB 32 
5EB C13 C26 C 0 1 N N N N N N -21.440 10.973 -18.322 4.616  2.196  -0.494 C13 5EB 33 
5EB O1  O5  O 0 1 N N N N N N -20.317 11.177 -18.757 4.531  1.381  -1.388 O1  5EB 34 
5EB H1  H1  H 0 1 N N N N N N -25.629 14.856 -20.313 -1.356 0.479  1.624  H1  5EB 35 
5EB H2  H2  H 0 1 N N N N N N -27.675 14.505 -18.469 -1.007 -1.930 -0.216 H2  5EB 36 
5EB H3  H3  H 0 1 N N N N N N -27.970 13.164 -19.627 -0.541 -1.895 1.502  H3  5EB 37 
5EB H4  H4  H 0 1 N N N N N N -26.510 15.357 -21.770 -2.230 -1.798 3.245  H4  5EB 38 
5EB H5  H5  H 0 1 N N N N N N -27.714 16.957 -23.155 -4.550 -2.320 3.885  H5  5EB 39 
5EB H6  H6  H 0 1 N N N N N N -30.039 17.580 -22.818 -6.267 -2.627 2.147  H6  5EB 40 
5EB H7  H7  H 0 1 N N N N N N -25.025 12.186 -19.971 -1.502 0.704  -1.283 H7  5EB 41 
5EB H8  H8  H 0 1 N N N N N N -31.231 16.625 -20.853 -5.664 -2.412 -0.231 H8  5EB 42 
5EB H9  H9  H 0 1 N N N N N N -25.381 10.425 -20.827 -3.615 2.337  -1.645 H9  5EB 43 
5EB H10 H10 H 0 1 N N N N N N -24.870 11.077 -22.420 -4.066 0.680  -2.112 H10 5EB 44 
5EB H11 H11 H 0 1 N N N N N N -27.707 10.602 -22.396 -5.878 0.696  -0.419 H11 5EB 45 
5EB H12 H12 H 0 1 N N N N N N -26.828 9.129  -21.865 -5.427 2.353  0.048  H12 5EB 46 
5EB H13 H13 H 0 1 N N N N N N -27.131 9.146  -24.408 -5.798 2.779  -2.656 H13 5EB 47 
5EB H14 H14 H 0 1 N N N N N N -24.668 8.852  -25.031 -8.078 2.486  -0.522 H14 5EB 48 
5EB H15 H15 H 0 1 N N N N N N -24.153 9.635  -23.498 -8.170 3.469  -2.079 H15 5EB 49 
5EB H16 H16 H 0 1 N N N N N N -25.482 11.816 -24.165 -7.754 1.363  -3.433 H16 5EB 50 
5EB H17 H17 H 0 1 N N N N N N -25.997 11.034 -25.698 -7.662 0.380  -1.875 H17 5EB 51 
5EB H18 H18 H 0 1 N N N N N N -30.010 15.073 -19.372 -3.345 -1.888 -0.870 H18 5EB 52 
5EB H19 H19 H 0 1 N N N N N N -23.673 14.574 -19.287 1.097  -0.464 2.110  H19 5EB 53 
5EB H20 H20 H 0 1 N N N N N N -23.823 13.703 -16.400 2.905  0.125  -0.118 H20 5EB 54 
5EB H21 H21 H 0 1 N N N N N N -21.701 15.795 -17.097 3.755  -0.828 2.707  H21 5EB 55 
5EB H23 H23 H 0 1 N N N N N N -23.908 17.364 -16.551 4.954  -2.431 1.333  H23 5EB 56 
5EB H25 H25 H 0 1 N N N N N N -27.162 16.544 -15.599 2.692  -3.644 -2.428 H25 5EB 57 
5EB H26 H26 H 0 1 N N N N N N -27.668 14.976 -14.884 3.720  -2.351 -3.092 H26 5EB 58 
5EB H27 H27 H 0 1 N N N N N N -27.720 16.789 -13.202 4.146  -4.506 -4.241 H27 5EB 59 
5EB H28 H28 H 0 1 N N N N N N -26.486 15.554 -12.780 5.585  -3.965 -3.345 H28 5EB 60 
5EB H29 H29 H 0 1 N N N N N N -25.979 17.121 -13.495 4.557  -5.258 -2.681 H29 5EB 61 
5EB H30 H30 H 0 1 N N N N N N -21.542 12.976 -16.741 2.503  2.322  1.058  H30 5EB 62 
5EB H31 H31 H 0 1 N N N N N N -21.443 13.825 -18.321 3.151  1.591  2.546  H31 5EB 63 
5EB H32 H32 H 0 1 N N N N N N -22.815 12.224 -19.393 5.262  1.021  1.189  H32 5EB 64 
5EB H33 H33 H 0 1 N N N N N N -24.027 11.939 -16.769 4.642  3.341  2.603  H33 5EB 65 
5EB H34 H34 H 0 1 N N N N N N -24.582 11.249 -18.332 6.231  3.085  1.807  H34 5EB 66 
5EB H35 H35 H 0 1 N N N N N N -23.867 9.169  -17.636 5.567  4.997  0.583  H35 5EB 67 
5EB H36 H36 H 0 1 N N N N N N -21.316 9.049  -17.666 4.755  3.960  -1.537 H36 5EB 68 
5EB H22 H22 H 0 1 N N N N N N -23.229 9.877  -16.113 3.827  4.676  0.850  H22 5EB 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5EB C24 C21 SING N N 1  
5EB C24 C27 SING N N 2  
5EB C21 C27 SING N N 3  
5EB C27 C23 SING N N 4  
5EB C23 C22 SING N N 5  
5EB C6  C7  DOUB Y N 6  
5EB C6  C5  SING Y N 7  
5EB C7  C8  SING Y N 8  
5EB O21 C20 DOUB N N 9  
5EB C22 C20 SING N N 10 
5EB C5  C4  DOUB Y N 11 
5EB C20 N2  SING N N 12 
5EB C8  C9  DOUB Y N 13 
5EB C4  C9  SING Y N 14 
5EB C4  C3  SING N N 15 
5EB N2  C2  SING N N 16 
5EB C2  C3  SING N N 17 
5EB C2  C17 SING N N 18 
5EB O1  C13 DOUB N N 19 
5EB N   C17 SING N N 20 
5EB N   C10 SING N N 21 
5EB C17 O4  DOUB N N 22 
5EB C12 C13 SING N N 23 
5EB C12 C11 SING N N 24 
5EB C12 C26 SING N N 25 
5EB C13 N1  SING N N 26 
5EB N1  C25 SING N N 27 
5EB C11 C10 SING N N 28 
5EB C26 C25 SING N N 29 
5EB C10 C14 SING N N 30 
5EB C14 C15 DOUB N Z 31 
5EB C15 C16 SING N N 32 
5EB O2  C16 SING N N 33 
5EB O2  C18 SING N N 34 
5EB C16 O3  DOUB N N 35 
5EB C18 C19 SING N N 36 
5EB C2  H1  SING N N 37 
5EB C3  H2  SING N N 38 
5EB C3  H3  SING N N 39 
5EB C5  H4  SING N N 40 
5EB C6  H5  SING N N 41 
5EB C7  H6  SING N N 42 
5EB N2  H7  SING N N 43 
5EB C8  H8  SING N N 44 
5EB C22 H9  SING N N 45 
5EB C22 H10 SING N N 46 
5EB C23 H11 SING N N 47 
5EB C23 H12 SING N N 48 
5EB C27 H13 SING N N 49 
5EB C21 H14 SING N N 50 
5EB C21 H15 SING N N 51 
5EB C24 H16 SING N N 52 
5EB C24 H17 SING N N 53 
5EB C9  H18 SING N N 54 
5EB N   H19 SING N N 55 
5EB C10 H20 SING N N 56 
5EB C14 H21 SING N N 57 
5EB C15 H23 SING N N 58 
5EB C18 H25 SING N N 59 
5EB C18 H26 SING N N 60 
5EB C19 H27 SING N N 61 
5EB C19 H28 SING N N 62 
5EB C19 H29 SING N N 63 
5EB C11 H30 SING N N 64 
5EB C11 H31 SING N N 65 
5EB C12 H32 SING N N 66 
5EB C26 H33 SING N N 67 
5EB C26 H34 SING N N 68 
5EB C25 H35 SING N N 69 
5EB N1  H36 SING N N 70 
5EB C25 H22 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5EB SMILES           ACDLabs              12.01 "C(Cc1ccccc1)(C(=O)NC(\C=C/C(=O)OCC)CC2C(NCC2)=O)NC(=O)CCC3CC3"                                                                                                                                                        
5EB InChI            InChI                1.03  "InChI=1S/C26H35N3O5/c1-2-34-24(31)13-11-21(17-20-14-15-27-25(20)32)28-26(33)22(16-19-6-4-3-5-7-19)29-23(30)12-10-18-8-9-18/h3-7,11,13,18,20-22H,2,8-10,12,14-17H2,1H3,(H,27,32)(H,28,33)(H,29,30)/t20-,21+,22-/m0/s1" 
5EB InChIKey         InChI                1.03  QRJJXRNUFIJDHO-BDTNDASRSA-N                                                                                                                                                                                            
5EB SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)\C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)CCC3CC3"                                                                                                                                               
5EB SMILES           CACTVS               3.385 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)CCC3CC3"                                                                                                                                                     
5EB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)CCC3CC3"                                                                                                                                                 
5EB SMILES           "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)CCC3CC3"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5EB "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (2Z,4S)-4-{[N-(3-cyclopropylpropanoyl)-L-phenylalanyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"                      
5EB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "ethyl (4S)-4-[[(2S)-2-(3-cyclopropylpropanoylamino)-3-phenyl-propanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5EB "Create component" 2015-09-16 RCSB 
5EB "Initial release"  2016-03-30 RCSB 
5EB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5EB 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
