data_7DB
# 
_chem_comp.id                                    7DB 
_chem_comp.name                                  
;(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[(2~{S})-3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-2-(2-phenylethanoylamino)propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H46 N6 O15" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-10-10 
_chem_comp.pdbx_modified_date                    2017-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        754.739 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7DB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LZI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7DB C4  C1  C 0 1 N N R 100.633 92.801  9.648  9.778   1.833  1.268  C4  7DB 1  
7DB C5  C2  C 0 1 N N R 99.349  93.052  8.942  8.928   0.561  1.305  C5  7DB 2  
7DB C6  C3  C 0 1 N N N 98.115  92.652  9.773  8.849   0.041  2.742  C6  7DB 3  
7DB C3  C4  C 0 1 N N R 101.793 93.339  8.813  9.804   2.381  -0.162 C3  7DB 4  
7DB O2  O1  O 0 1 N N N 102.534 95.107  7.467  8.374   3.074  -1.985 O2  7DB 5  
7DB C2  C5  C 0 1 N N R 101.418 94.739  8.366  8.366   2.631  -0.627 C2  7DB 6  
7DB O3  O2  O 0 1 N N N 103.020 93.271  9.508  10.536  3.608  -0.191 O3  7DB 7  
7DB O4  O3  O 0 1 N N N 100.655 93.410  10.902 9.214   2.811  2.144  O4  7DB 8  
7DB O6  O4  O 0 1 N N N 96.899  92.912  9.072  8.154   -1.208 2.760  O6  7DB 9  
7DB O5  O5  O 0 1 N N N 99.092  94.410  8.533  7.612   0.855  0.832  O5  7DB 10 
7DB C1  C6  C 0 1 N N S 100.125 94.765  7.652  7.569   1.328  -0.518 C1  7DB 11 
7DB CBQ C7  C 0 1 N N N 99.770  96.182  7.120  6.116   1.584  -0.924 CBQ 7DB 12 
7DB CBE C8  C 0 1 N N N 98.675  95.955  6.062  5.350   0.259  -0.935 CBE 7DB 13 
7DB NAA N1  N 0 1 N N N 97.943  97.187  5.666  3.958   0.504  -1.324 NAA 7DB 14 
7DB C   C9  C 0 1 N N N 98.586  98.068  4.824  3.090   -0.524 -1.402 C   7DB 15 
7DB O   O6  O 0 1 N N N 99.716  97.836  4.430  3.460   -1.651 -1.151 O   7DB 16 
7DB CA  C10 C 0 1 N N S 97.813  99.255  4.346  1.659   -0.273 -1.802 CA  7DB 17 
7DB N   N2  N 0 1 N N N 96.521  99.440  5.018  1.057   -1.522 -2.273 N   7DB 18 
7DB CBS C11 C 0 1 N N N 95.351  99.150  4.399  0.983   -2.587 -1.451 CBS 7DB 19 
7DB OBV O7  O 0 1 N N N 95.356  98.853  3.227  1.415   -2.511 -0.320 OBV 7DB 20 
7DB CBT C12 C 0 1 N N N 94.031  99.313  5.181  0.363   -3.872 -1.936 CBT 7DB 21 
7DB CBU C13 C 0 1 Y N N 93.641  100.644 4.860  0.404   -4.897 -0.832 CBU 7DB 22 
7DB CBW C14 C 0 1 Y N N 94.089  101.746 5.643  -0.649  -4.996 0.058  CBW 7DB 23 
7DB CBX C15 C 0 1 Y N N 93.736  103.067 5.299  -0.611  -5.936 1.071  CBX 7DB 24 
7DB CBY C16 C 0 1 Y N N 92.932  103.314 4.168  0.479   -6.777 1.194  CBY 7DB 25 
7DB CBZ C17 C 0 1 Y N N 92.480  102.245 3.380  1.532   -6.679 0.303  CBZ 7DB 26 
7DB CCA C18 C 0 1 Y N N 92.836  100.925 3.723  1.492   -5.743 -0.713 CCA 7DB 27 
7DB CB  C19 C 0 1 N N N 98.703  100.466 4.591  0.876   0.247  -0.594 CB  7DB 28 
7DB CG  C20 C 0 1 Y N N 98.130  101.739 3.994  -0.522  0.614  -1.022 CG  7DB 29 
7DB CD1 C21 C 0 1 Y N N 98.428  102.343 2.795  -1.678  0.160  -0.486 CD1 7DB 30 
7DB ND2 N3  N 0 1 Y N N 97.286  102.541 4.643  -0.863  1.458  -2.002 ND2 7DB 31 
7DB NAJ N4  N 0 1 Y N N 97.042  103.581 3.847  -2.146  1.518  -2.072 NAJ 7DB 32 
7DB NAI N5  N 0 1 Y N N 97.745  103.434 2.721  -2.675  0.755  -1.181 NAI 7DB 33 
7DB CAR C22 C 0 1 N N R 97.702  104.504 1.763  -4.110  0.566  -0.956 CAR 7DB 34 
7DB CBA C23 C 0 1 N N N 98.961  105.360 2.086  -4.462  -0.886 -1.147 CBA 7DB 35 
7DB OBC O8  O 0 1 N N N 98.775  106.266 2.866  -4.319  -1.751 -0.131 OBC 7DB 36 
7DB OBB O9  O 0 1 N N N 99.986  105.083 1.498  -4.873  -1.273 -2.216 OBB 7DB 37 
7DB OAS O10 O 0 1 N N N 97.918  103.878 0.561  -4.440  0.965  0.376  OAS 7DB 38 
7DB CAQ C24 C 0 1 N N N 96.398  105.249 1.876  -4.900  1.419  -1.952 CAQ 7DB 39 
7DB CAP C25 C 0 1 N N S 96.302  106.146 0.657  -6.398  1.262  -1.672 CAP 7DB 40 
7DB OBD O11 O 0 1 N N N 94.953  106.787 0.741  -7.140  2.111  -2.550 OBD 7DB 41 
7DB CAO C26 C 0 1 N N R 96.485  105.474 -0.610 -6.678  1.658  -0.219 CAO 7DB 42 
7DB NAN N6  N 0 1 N N N 96.425  106.478 -1.707 -8.095  1.441  0.083  NAN 7DB 43 
7DB CAL C27 C 0 1 N N N 95.704  106.308 -2.795 -9.000  2.397  -0.208 CAL 7DB 44 
7DB OAM O12 O 0 1 N N N 95.148  105.239 -3.082 -8.641  3.436  -0.721 OAM 7DB 45 
7DB CAK C28 C 0 1 N N N 95.618  107.505 -3.800 -10.458 2.174  0.102  CAK 7DB 46 
7DB CAT C29 C 0 1 N N R 97.821  104.755 -0.580 -5.819  0.796  0.711  CAT 7DB 47 
7DB CAU C30 C 0 1 N N R 98.203  103.908 -1.763 -6.049  1.226  2.161  CAU 7DB 48 
7DB OAZ O13 O 0 1 N N N 97.148  102.999 -2.126 -5.796  2.627  2.289  OAZ 7DB 49 
7DB CAV C31 C 0 1 N N R 99.515  103.126 -1.558 -5.100  0.452  3.079  CAV 7DB 50 
7DB OAY O14 O 0 1 N N N 100.602 104.023 -1.101 -5.352  -0.949 2.952  OAY 7DB 51 
7DB CAW C32 C 0 1 N N N 99.969  102.455 -2.870 -5.329  0.882  4.529  CAW 7DB 52 
7DB OAX O15 O 0 1 N N N 100.920 101.454 -2.606 -4.366  0.246  5.372  OAX 7DB 53 
7DB H1  H1  H 0 1 N N N 100.766 91.715  9.758  10.794  1.601  1.588  H1  7DB 54 
7DB H2  H2  H 0 1 N N N 99.342  92.421  8.041  9.382   -0.199 0.668  H2  7DB 55 
7DB H3  H3  H 0 1 N N N 98.172  91.577  10.001 9.857   -0.098 3.134  H3  7DB 56 
7DB H4  H4  H 0 1 N N N 98.115  93.227  10.711 8.316   0.762  3.361  H4  7DB 57 
7DB H5  H5  H 0 1 N N N 101.863 92.714  7.911  10.281  1.656  -0.822 H5  7DB 58 
7DB H6  H6  H 0 1 N N N 103.352 95.082  7.950  8.866   3.894  -2.129 H6  7DB 59 
7DB H7  H7  H 0 1 N N N 101.389 95.413  9.235  7.907   3.393  0.002  H7  7DB 60 
7DB H8  H8  H 0 1 N N N 103.194 92.371  9.758  11.455  3.525  0.099  H8  7DB 61 
7DB H9  H9  H 0 1 N N N 99.936  93.080  11.427 9.165   2.529  3.068  H9  7DB 62 
7DB H10 H10 H 0 1 N N N 96.161  92.654  9.611  8.067   -1.597 3.641  H10 7DB 63 
7DB H11 H11 H 0 1 N N N 100.162 94.071  6.799  8.005   0.579  -1.179 H11 7DB 64 
7DB H12 H12 H 0 1 N N N 100.653 96.655  6.666  5.654   2.265  -0.210 H12 7DB 65 
7DB H13 H13 H 0 1 N N N 99.393  96.816  7.935  6.089   2.027  -1.919 H13 7DB 66 
7DB H14 H14 H 0 1 N N N 97.947  95.237  6.468  5.812   -0.422 -1.649 H14 7DB 67 
7DB H15 H15 H 0 1 N N N 99.147  95.531  5.163  5.376   -0.184 0.060  H15 7DB 68 
7DB H16 H16 H 0 1 N N N 97.018  97.370  5.999  3.662   1.405  -1.525 H16 7DB 69 
7DB H17 H17 H 0 1 N N N 97.647  99.158  3.263  1.630   0.469  -2.600 H17 7DB 70 
7DB H18 H18 H 0 1 N N N 96.504  99.788  5.955  0.712   -1.583 -3.178 H18 7DB 71 
7DB H19 H19 H 0 1 N N N 93.277  98.586  4.843  -0.672  -3.690 -2.225 H19 7DB 72 
7DB H20 H20 H 0 1 N N N 94.194  99.197  6.263  0.921   -4.242 -2.796 H20 7DB 73 
7DB H21 H21 H 0 1 N N N 94.707  101.568 6.511  -1.500  -4.339 -0.037 H21 7DB 74 
7DB H22 H22 H 0 1 N N N 94.083  103.892 5.904  -1.434  -6.013 1.767  H22 7DB 75 
7DB H23 H23 H 0 1 N N N 92.664  104.327 3.908  0.508   -7.512 1.985  H23 7DB 76 
7DB H24 H24 H 0 1 N N N 91.862  102.433 2.514  2.381   -7.339 0.396  H24 7DB 77 
7DB H25 H25 H 0 1 N N N 92.489  100.108 3.108  2.314   -5.665 -1.409 H25 7DB 78 
7DB H26 H26 H 0 1 N N N 99.688  100.277 4.139  0.830   -0.529 0.170  H26 7DB 79 
7DB H27 H27 H 0 1 N N N 98.818  100.606 5.676  1.375   1.127  -0.189 H27 7DB 80 
7DB H28 H28 H 0 1 N N N 99.113  101.970 2.048  -1.785  -0.538 0.331  H28 7DB 81 
7DB H29 H29 H 0 1 N N N 99.577  106.765 2.969  -4.558  -2.673 -0.302 H29 7DB 82 
7DB H30 H30 H 0 1 N N N 96.386  105.855 2.794  -4.616  2.465  -1.842 H30 7DB 83 
7DB H31 H31 H 0 1 N N N 95.557  104.540 1.893  -4.682  1.087  -2.968 H31 7DB 84 
7DB H32 H32 H 0 1 N N N 97.063  106.934 0.755  -6.693  0.225  -1.832 H32 7DB 85 
7DB H33 H33 H 0 1 N N N 94.860  107.220 1.581  -7.005  1.921  -3.488 H33 7DB 86 
7DB H34 H34 H 0 1 N N N 95.686  104.732 -0.756 -6.430  2.709  -0.073 H34 7DB 87 
7DB H35 H35 H 0 1 N N N 96.957  107.320 -1.613 -8.382  0.610  0.493  H35 7DB 88 
7DB H36 H36 H 0 1 N N N 95.033  107.203 -4.681 -10.580 2.014  1.173  H36 7DB 89 
7DB H37 H37 H 0 1 N N N 95.128  108.360 -3.311 -11.031 3.049  -0.202 H37 7DB 90 
7DB H38 H38 H 0 1 N N N 96.632  107.794 -4.114 -10.815 1.299  -0.440 H38 7DB 91 
7DB H39 H39 H 0 1 N N N 98.596  105.528 -0.475 -6.096  -0.252 0.594  H39 7DB 92 
7DB H40 H40 H 0 1 N N N 98.370  104.590 -2.610 -7.080  1.016  2.444  H40 7DB 93 
7DB H41 H41 H 0 1 N N N 96.341  103.484 -2.252 -4.895  2.887  2.053  H41 7DB 94 
7DB H42 H42 H 0 1 N N N 99.344  102.344 -0.804 -4.069  0.662  2.796  H42 7DB 95 
7DB H43 H43 H 0 1 N N N 100.389 104.368 -0.242 -6.253  -1.209 3.188  H43 7DB 96 
7DB H44 H44 H 0 1 N N N 100.415 103.214 -3.529 -5.224  1.964  4.608  H44 7DB 97 
7DB H45 H45 H 0 1 N N N 99.097  102.004 -3.367 -6.333  0.591  4.840  H45 7DB 98 
7DB H46 H46 H 0 1 N N N 101.190 101.050 -3.422 -4.452  0.474  6.308  H46 7DB 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7DB CAK CAL SING N N 1   
7DB OAM CAL DOUB N N 2   
7DB CAW OAX SING N N 3   
7DB CAW CAV SING N N 4   
7DB CAL NAN SING N N 5   
7DB OAZ CAU SING N N 6   
7DB CAU CAV SING N N 7   
7DB CAU CAT SING N N 8   
7DB NAN CAO SING N N 9   
7DB CAV OAY SING N N 10  
7DB CAO CAT SING N N 11  
7DB CAO CAP SING N N 12  
7DB CAT OAS SING N N 13  
7DB OAS CAR SING N N 14  
7DB CAP OBD SING N N 15  
7DB CAP CAQ SING N N 16  
7DB OBB CBA DOUB N N 17  
7DB CAR CAQ SING N N 18  
7DB CAR CBA SING N N 19  
7DB CAR NAI SING N N 20  
7DB CBA OBC SING N N 21  
7DB NAI CD1 SING Y N 22  
7DB NAI NAJ SING Y N 23  
7DB CD1 CG  DOUB Y N 24  
7DB OBV CBS DOUB N N 25  
7DB CBZ CCA DOUB Y N 26  
7DB CBZ CBY SING Y N 27  
7DB CCA CBU SING Y N 28  
7DB NAJ ND2 DOUB Y N 29  
7DB CG  CB  SING N N 30  
7DB CG  ND2 SING Y N 31  
7DB CBY CBX DOUB Y N 32  
7DB CA  CB  SING N N 33  
7DB CA  C   SING N N 34  
7DB CA  N   SING N N 35  
7DB CBS N   SING N N 36  
7DB CBS CBT SING N N 37  
7DB O   C   DOUB N N 38  
7DB C   NAA SING N N 39  
7DB CBU CBT SING N N 40  
7DB CBU CBW DOUB Y N 41  
7DB CBX CBW SING Y N 42  
7DB NAA CBE SING N N 43  
7DB CBE CBQ SING N N 44  
7DB CBQ C1  SING N N 45  
7DB O2  C2  SING N N 46  
7DB C1  C2  SING N N 47  
7DB C1  O5  SING N N 48  
7DB C2  C3  SING N N 49  
7DB O5  C5  SING N N 50  
7DB C3  O3  SING N N 51  
7DB C3  C4  SING N N 52  
7DB C5  C4  SING N N 53  
7DB C5  C6  SING N N 54  
7DB O6  C6  SING N N 55  
7DB C4  O4  SING N N 56  
7DB C4  H1  SING N N 57  
7DB C5  H2  SING N N 58  
7DB C6  H3  SING N N 59  
7DB C6  H4  SING N N 60  
7DB C3  H5  SING N N 61  
7DB O2  H6  SING N N 62  
7DB C2  H7  SING N N 63  
7DB O3  H8  SING N N 64  
7DB O4  H9  SING N N 65  
7DB O6  H10 SING N N 66  
7DB C1  H11 SING N N 67  
7DB CBQ H12 SING N N 68  
7DB CBQ H13 SING N N 69  
7DB CBE H14 SING N N 70  
7DB CBE H15 SING N N 71  
7DB NAA H16 SING N N 72  
7DB CA  H17 SING N N 73  
7DB N   H18 SING N N 74  
7DB CBT H19 SING N N 75  
7DB CBT H20 SING N N 76  
7DB CBW H21 SING N N 77  
7DB CBX H22 SING N N 78  
7DB CBY H23 SING N N 79  
7DB CBZ H24 SING N N 80  
7DB CCA H25 SING N N 81  
7DB CB  H26 SING N N 82  
7DB CB  H27 SING N N 83  
7DB CD1 H28 SING N N 84  
7DB OBC H29 SING N N 85  
7DB CAQ H30 SING N N 86  
7DB CAQ H31 SING N N 87  
7DB CAP H32 SING N N 88  
7DB OBD H33 SING N N 89  
7DB CAO H34 SING N N 90  
7DB NAN H35 SING N N 91  
7DB CAK H36 SING N N 92  
7DB CAK H37 SING N N 93  
7DB CAK H38 SING N N 94  
7DB CAT H39 SING N N 95  
7DB CAU H40 SING N N 96  
7DB OAZ H41 SING N N 97  
7DB CAV H42 SING N N 98  
7DB OAY H43 SING N N 99  
7DB CAW H44 SING N N 100 
7DB CAW H45 SING N N 101 
7DB OAX H46 SING N N 102 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7DB InChI            InChI                1.03  
;InChI=1S/C32H46N6O15/c1-15(41)34-24-19(42)11-32(31(50)51,53-29(24)25(45)20(43)13-39)38-12-17(36-37-38)10-18(35-23(44)9-16-5-3-2-4-6-16)30(49)33-8-7-21-26(46)28(48)27(47)22(14-40)52-21/h2-6,12,18-22,24-29,39-40,42-43,45-48H,7-11,13-14H2,1H3,(H,33,49)(H,34,41)(H,35,44)(H,50,51)/t18-,19-,20+,21-,22+,24+,25+,26-,27-,28+,29+,32+/m0/s1
;
7DB InChIKey         InChI                1.03  VJJPXKHAIAQVCK-WZAWTCGUSA-N 
7DB SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)C[C@](O[C@H]1[C@H](O)[C@H](O)CO)(n2cc(C[C@H](NC(=O)Cc3ccccc3)C(=O)NCC[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)nn2)C(O)=O" 
7DB SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)C[C](O[CH]1[CH](O)[CH](O)CO)(n2cc(C[CH](NC(=O)Cc3ccccc3)C(=O)NCC[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)nn2)C(O)=O" 
7DB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)n2cc(nn2)C[C@@H](C(=O)NCC[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)NC(=O)Cc4ccccc4)O" 
7DB SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)n2cc(nn2)CC(C(=O)NCCC3C(C(C(C(O3)CO)O)O)O)NC(=O)Cc4ccccc4)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[(2~{S})-3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-2-(2-phenylethanoylamino)propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7DB "Create component" 2016-10-10 RCSB 
7DB "Initial release"  2017-05-31 RCSB 
# 
