data_7VB
# 
_chem_comp.id                                    7VB 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methylidene-L-norvalinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H38 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.603 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7VB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RVN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7VB C1  C1  C 0 1 Y N N N N N 6.119  -13.090 20.878 9.672  1.110  -2.023 C1  7VB 1  
7VB C11 C2  C 0 1 N N S N N N 9.512  -7.410  18.992 1.826  -0.227 1.215  C11 7VB 2  
7VB C12 C3  C 0 1 N N N N N N 9.700  -6.131  18.231 0.637  -0.422 0.310  C12 7VB 3  
7VB C14 C4  C 0 1 N N S N N N 9.235  -3.802  18.023 -1.716 -0.945 -0.048 C14 7VB 4  
7VB C15 C5  C 0 1 N N N N N N 10.648 -3.275  18.117 -2.984 -0.700 0.729  C15 7VB 5  
7VB C17 C6  C 0 1 N N S N N N 12.616 -2.374  16.969 -5.413 -0.579 0.875  C17 7VB 6  
7VB C19 C7  C 0 1 N N N N N N 13.490 -3.174  16.001 -6.517 -0.123 -0.082 C19 7VB 7  
7VB C2  C8  C 0 1 Y N N N N N 6.280  -13.433 19.539 9.209  1.989  -1.062 C2  7VB 8  
7VB C20 C9  C 0 1 N N S N N N 13.610 -4.618  16.479 -6.144 1.234  -0.682 C20 7VB 9  
7VB C21 C10 C 0 1 N N N N N N 14.472 -4.740  17.726 -6.101 2.319  0.418  C21 7VB 10 
7VB C22 C11 C 0 1 N N N N N N 15.287 -6.015  17.522 -6.659 3.549  -0.331 C22 7VB 11 
7VB C24 C12 C 0 1 N N N N N N 14.343 -5.473  15.481 -7.223 1.708  -1.630 C24 7VB 12 
7VB C3  C13 C 0 1 Y N N N N N 6.107  -12.483 18.530 8.220  1.592  -0.182 C3  7VB 13 
7VB C30 C14 C 0 1 N N N N N N 10.853 -8.080  19.305 1.531  0.897  2.210  C30 7VB 14 
7VB C31 C15 C 0 1 N N N N N N 10.693 -9.243  20.283 2.738  1.094  3.128  C31 7VB 15 
7VB C32 C16 C 0 1 N N N N N N 11.854 -7.066  19.848 1.253  2.193  1.447  C32 7VB 16 
7VB C34 C17 C 0 1 N N N N N N 8.199  -2.828  18.613 -1.717 -2.377 -0.587 C34 7VB 17 
7VB C35 C18 C 0 1 N N N N N N 6.808  -3.051  18.027 -0.510 -2.584 -1.465 C35 7VB 18 
7VB C36 C19 C 0 1 N N N N N N 6.213  -4.412  17.821 -0.559 -2.190 -2.919 C36 7VB 19 
7VB C37 C20 C 0 1 N N N N N N 6.069  -2.020  17.671 0.582  -3.106 -0.965 C37 7VB 20 
7VB C4  C21 C 0 1 Y N N N N N 5.769  -11.180 18.890 7.694  0.316  -0.263 C4  7VB 21 
7VB C5  C22 C 0 1 Y N N N N N 5.600  -10.842 20.235 8.157  -0.563 -1.224 C5  7VB 22 
7VB C6  C23 C 0 1 Y N N N N N 5.779  -11.790 21.232 9.147  -0.166 -2.104 C6  7VB 23 
7VB C7  C24 C 0 1 N N N N N N 5.558  -10.125 17.827 6.617  -0.117 0.698  C7  7VB 24 
7VB C8  C25 C 0 1 N N N N N N 12.624 -0.899  16.573 -5.843 -1.872 1.571  C8  7VB 25 
7VB C9  C26 C 0 1 N N N N N N 7.446  -8.603  18.490 4.237  -0.133 0.874  C9  7VB 26 
7VB N10 N1  N 0 1 N N N N N N 8.695  -8.287  18.183 2.998  0.127  0.411  N10 7VB 27 
7VB N13 N2  N 0 1 N N N N N N 9.152  -5.046  18.758 -0.560 -0.756 0.832  N13 7VB 28 
7VB N16 N3  N 0 1 N N N N N N 11.251 -2.898  16.985 -4.181 -0.817 0.120  N16 7VB 29 
7VB N23 N4  N 0 1 N N N N N N 15.246 -6.249  16.087 -7.495 3.006  -1.408 N23 7VB 30 
7VB O26 O1  O 0 1 N N N N N N 14.115 -5.449  14.289 -7.764 1.019  -2.468 O26 7VB 31 
7VB O29 O2  O 0 1 N N N N N N 6.879  -8.235  19.518 4.381  -0.662 1.959  O29 7VB 32 
7VB O33 O3  O 0 1 N N N N N N 10.298 -6.090  17.168 0.757  -0.279 -0.889 O33 7VB 33 
7VB O38 O4  O 0 1 N N N N N N 11.207 -3.232  19.208 -2.928 -0.397 1.902  O38 7VB 34 
7VB O8  O5  O 0 1 N N N N N N 6.766  -9.438  17.513 5.314  0.192  0.136  O8  7VB 35 
7VB O9  O6  O 0 1 N N N N N N 13.938 -0.328  16.706 -6.185 -2.851 0.588  O9  7VB 36 
7VB H1  H1  H 0 1 N N N N N N 6.259  -13.837 21.645 10.442 1.421  -2.714 H1  7VB 37 
7VB H2  H2  H 0 1 N N N N N N 8.998  -7.192  19.940 2.024  -1.151 1.758  H2  7VB 38 
7VB H3  H3  H 0 1 N N N N N N 8.989  -3.977  16.965 -1.658 -0.243 -0.880 H3  7VB 39 
7VB H4  H4  H 0 1 N N N N N N 13.048 -2.463  17.977 -5.238 0.195  1.622  H4  7VB 40 
7VB H5  H5  H 0 1 N N N N N N 14.491 -2.721  15.955 -6.631 -0.855 -0.881 H5  7VB 41 
7VB H6  H6  H 0 1 N N N N N N 13.034 -3.158  15.000 -7.456 -0.033 0.464  H6  7VB 42 
7VB H7  H7  H 0 1 N N N N N N 6.542  -14.447 19.277 9.619  2.986  -1.000 H7  7VB 43 
7VB H8  H8  H 0 1 N N N N N N 12.610 -5.033  16.672 -5.184 1.172  -1.194 H8  7VB 44 
7VB H9  H9  H 0 1 N N N N N N 15.136 -3.868  17.823 -6.742 2.050  1.257  H9  7VB 45 
7VB H10 H10 H 0 1 N N N N N N 13.842 -4.823  18.624 -5.078 2.496  0.752  H10 7VB 46 
7VB H11 H11 H 0 1 N N N N N N 14.834 -6.857  18.066 -7.260 4.160  0.342  H11 7VB 47 
7VB H12 H12 H 0 1 N N N N N N 16.323 -5.873  17.863 -5.843 4.140  -0.747 H12 7VB 48 
7VB H13 H13 H 0 1 N N N N N N 6.233  -12.753 17.492 7.858  2.278  0.569  H13 7VB 49 
7VB H14 H14 H 0 1 N N N N N N 11.256 -8.483  18.364 0.658  0.633  2.808  H14 7VB 50 
7VB H15 H15 H 0 1 N N N N N N 11.676 -9.695  20.480 2.528  1.895  3.837  H15 7VB 51 
7VB H16 H16 H 0 1 N N N N N N 10.264 -8.873  21.226 2.936  0.171  3.672  H16 7VB 52 
7VB H17 H17 H 0 1 N N N N N N 10.023 -9.999  19.847 3.610  1.358  2.531  H17 7VB 53 
7VB H18 H18 H 0 1 N N N N N N 12.807 -7.571  20.065 0.393  2.053  0.792  H18 7VB 54 
7VB H19 H19 H 0 1 N N N N N N 12.019 -6.277  19.100 1.043  2.994  2.155  H19 7VB 55 
7VB H20 H20 H 0 1 N N N N N N 11.458 -6.618  20.772 2.125  2.457  0.849  H20 7VB 56 
7VB H21 H21 H 0 1 N N N N N N 8.153  -2.975  19.702 -1.686 -3.079 0.246  H21 7VB 57 
7VB H22 H22 H 0 1 N N N N N N 8.516  -1.797  18.395 -2.623 -2.545 -1.170 H22 7VB 58 
7VB H23 H23 H 0 1 N N N N N N 6.926  -5.179  18.156 -0.233 -1.155 -3.026 H23 7VB 59 
7VB H24 H24 H 0 1 N N N N N N 5.283  -4.497  18.402 0.100  -2.840 -3.494 H24 7VB 60 
7VB H25 H25 H 0 1 N N N N N N 5.993  -4.558  16.753 -1.580 -2.289 -3.288 H25 7VB 61 
7VB H26 H26 H 0 1 N N N N N N 6.448  -1.016  17.794 1.447  -3.254 -1.594 H26 7VB 62 
7VB H27 H27 H 0 1 N N N N N N 5.085  -2.179  17.256 0.617  -3.388 0.077  H27 7VB 63 
7VB H28 H28 H 0 1 N N N N N N 5.327  -9.832  20.502 7.747  -1.560 -1.287 H28 7VB 64 
7VB H29 H29 H 0 1 N N N N N N 5.656  -11.521 22.271 9.506  -0.852 -2.857 H29 7VB 65 
7VB H30 H30 H 0 1 N N N N N N 4.819  -9.396  18.191 6.693  -1.191 0.869  H30 7VB 66 
7VB H31 H31 H 0 1 N N N N N N 5.177  -10.609 16.916 6.739  0.411  1.644  H31 7VB 67 
7VB H32 H32 H 0 1 N N N N N N 11.927 -0.350  17.223 -5.023 -2.244 2.184  H32 7VB 68 
7VB H33 H33 H 0 1 N Y N N N N 12.298 -0.807  15.526 -6.709 -1.674 2.203  H33 7VB 69 
7VB H34 H34 H 0 1 N N N N N N 9.093  -8.674  17.351 2.883  0.549  -0.455 H34 7VB 70 
7VB H35 H35 H 0 1 N N N N N N 8.691  -5.086  19.644 -0.656 -0.870 1.790  H35 7VB 71 
7VB H36 H36 H 0 1 N N N N N N 10.753 -2.977  16.122 -4.226 -1.059 -0.818 H36 7VB 72 
7VB H37 H37 H 0 1 N N N N N N 15.824 -6.911  15.611 -8.159 3.517  -1.896 H37 7VB 73 
7VB H38 H38 H 0 1 N N N N N N 13.913 0.588   16.454 -6.468 -3.698 0.958  H38 7VB 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7VB O26 C24 DOUB N N 1  
7VB C24 N23 SING N N 2  
7VB C24 C20 SING N N 3  
7VB C19 C20 SING N N 4  
7VB C19 C17 SING N N 5  
7VB N23 C22 SING N N 6  
7VB C20 C21 SING N N 7  
7VB C8  O9  SING N N 8  
7VB C8  C17 SING N N 9  
7VB C17 N16 SING N N 10 
7VB N16 C15 SING N N 11 
7VB O33 C12 DOUB N N 12 
7VB O8  C7  SING N N 13 
7VB O8  C9  SING N N 14 
7VB C22 C21 SING N N 15 
7VB C37 C35 DOUB N N 16 
7VB C36 C35 SING N N 17 
7VB C7  C4  SING N N 18 
7VB C14 C15 SING N N 19 
7VB C14 C34 SING N N 20 
7VB C14 N13 SING N N 21 
7VB C35 C34 SING N N 22 
7VB C15 O38 DOUB N N 23 
7VB N10 C9  SING N N 24 
7VB N10 C11 SING N N 25 
7VB C12 N13 SING N N 26 
7VB C12 C11 SING N N 27 
7VB C9  O29 DOUB N N 28 
7VB C3  C4  DOUB Y N 29 
7VB C3  C2  SING Y N 30 
7VB C4  C5  SING Y N 31 
7VB C11 C30 SING N N 32 
7VB C30 C32 SING N N 33 
7VB C30 C31 SING N N 34 
7VB C2  C1  DOUB Y N 35 
7VB C5  C6  DOUB Y N 36 
7VB C1  C6  SING Y N 37 
7VB C1  H1  SING N N 38 
7VB C11 H2  SING N N 39 
7VB C14 H3  SING N N 40 
7VB C17 H4  SING N N 41 
7VB C19 H5  SING N N 42 
7VB C19 H6  SING N N 43 
7VB C2  H7  SING N N 44 
7VB C20 H8  SING N N 45 
7VB C21 H9  SING N N 46 
7VB C21 H10 SING N N 47 
7VB C22 H11 SING N N 48 
7VB C22 H12 SING N N 49 
7VB C3  H13 SING N N 50 
7VB C30 H14 SING N N 51 
7VB C31 H15 SING N N 52 
7VB C31 H16 SING N N 53 
7VB C31 H17 SING N N 54 
7VB C32 H18 SING N N 55 
7VB C32 H19 SING N N 56 
7VB C32 H20 SING N N 57 
7VB C34 H21 SING N N 58 
7VB C34 H22 SING N N 59 
7VB C36 H23 SING N N 60 
7VB C36 H24 SING N N 61 
7VB C36 H25 SING N N 62 
7VB C37 H26 SING N N 63 
7VB C37 H27 SING N N 64 
7VB C5  H28 SING N N 65 
7VB C6  H29 SING N N 66 
7VB C7  H30 SING N N 67 
7VB C7  H31 SING N N 68 
7VB C8  H32 SING N N 69 
7VB C8  H33 SING N N 70 
7VB N10 H34 SING N N 71 
7VB N13 H35 SING N N 72 
7VB N16 H36 SING N N 73 
7VB N23 H37 SING N N 74 
7VB O9  H38 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7VB SMILES           ACDLabs              12.01 "CC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC(=C)C)C(=O)NC(CC1CCNC1=O)CO"                                                                                                                                                               
7VB InChI            InChI                1.03  "InChI=1S/C26H38N4O6/c1-16(2)12-21(24(33)28-20(14-31)13-19-10-11-27-23(19)32)29-25(34)22(17(3)4)30-26(35)36-15-18-8-6-5-7-9-18/h5-9,17,19-22,31H,1,10-15H2,2-4H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20-,21-,22-/m0/s1" 
7VB InChIKey         InChI                1.03  BYTYQUJNXNJHDG-CMOCDZPBSA-N                                                                                                                                                                                                   
7VB SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC(C)=C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                                             
7VB SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC(C)=C)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                                                   
7VB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](CC(=C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2"                                                                                                                                           
7VB SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(CC(=C)C)C(=O)NC(CC1CCNC1=O)CO)NC(=O)OCc2ccccc2"                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7VB "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methylidene-L-norvalinamide"                                                                                                
7VB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pent-4-en-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7VB "Create component" 2021-08-23 RCSB 
7VB "Initial release"  2022-07-20 RCSB 
7VB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            7VB 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
