data_8JB
# 
_chem_comp.id                                    8JB 
_chem_comp.name                                  "(2~{R})-2-azanyl-3-[[(5~{S})-5-[(1~{S})-1-azanyl-2-oxidanyl-2-oxidanylidene-ethyl]-4,5-dihydro-1,2-oxazol-3-yl]sulfanyl]propanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C8 H13 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        263.271 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     8JB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5N29 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8JB O3  O1  O 0 1 N N N N N N 50.953 64.773 15.849 -1.757 0.921  0.046  O3  8JB 1  
8JB C4  C1  C 0 1 N N N N N N 51.034 66.715 14.518 -1.495 -1.379 -0.104 C4  8JB 2  
8JB C5  C2  C 0 1 N N S N N N 51.479 66.141 15.852 -2.488 -0.234 -0.415 C5  8JB 3  
8JB N2  N1  N 0 1 N N N N N N 50.086 64.608 14.739 -0.380 0.606  -0.013 N2  8JB 4  
8JB N3  N2  N 0 1 N N N N N N 51.827 66.743 18.198 -4.488 -1.611 -0.099 N3  8JB 5  
8JB C   C3  C 0 1 N N N N N N 49.618 62.991 11.369 4.840  0.821  -0.122 C   8JB 6  
8JB O   O2  O 0 1 N N N N N N 49.817 62.694 10.188 5.365  1.143  0.917  O   8JB 7  
8JB CA  C4  C 0 1 N N R N N N 48.143 63.612 11.390 3.955  -0.398 -0.173 CA  8JB 8  
8JB N   N3  N 0 1 N N N N N N 47.154 62.524 11.269 4.256  -1.269 0.970  N   8JB 9  
8JB CB  C5  C 0 1 N N N N N N 47.928 64.459 12.644 2.488  0.034  -0.114 CB  8JB 10 
8JB S   S1  S 0 1 N N N N N N 48.928 65.968 12.668 1.426  -1.430 -0.175 S   8JB 11 
8JB C3  C6  C 0 1 N N N N N N 50.042 65.689 14.004 -0.158 -0.662 -0.093 C3  8JB 12 
8JB C2  C7  C 0 1 N N S N N N 50.930 66.905 17.063 -3.788 -0.408 0.372  C2  8JB 13 
8JB C1  C8  C 0 1 N N N N N N 49.515 66.403 17.400 -4.667 0.798  0.164  C1  8JB 14 
8JB O2  O3  O 0 1 N N N N N N 49.300 65.456 18.141 -4.438 1.923  0.858  O2  8JB 15 
8JB O1  O4  O 0 1 N N N N N N 48.579 67.085 16.783 -5.579 0.752  -0.628 O1  8JB 16 
8JB O4  O5  O 0 1 N Y N N N N 50.318 62.549 12.372 5.044  1.550  -1.231 O4  8JB 17 
8JB H1  H1  H 0 1 N N N N N N 51.886 66.817 13.830 -1.705 -1.821 0.870  H1  8JB 18 
8JB H2  H2  H 0 1 N N N N N N 50.552 67.695 14.653 -1.523 -2.138 -0.886 H2  8JB 19 
8JB H3  H3  H 0 1 N N N N N N 52.578 66.127 15.898 -2.687 -0.169 -1.484 H3  8JB 20 
8JB H4  H4  H 0 1 N N N N N N 51.464 67.243 18.984 -4.711 -1.539 -1.080 H4  8JB 21 
8JB H5  H5  H 0 1 N N N N N N 51.903 65.772 18.427 -3.946 -2.441 0.089  H5  8JB 22 
8JB H7  H7  H 0 1 N N N N N N 48.054 64.271 10.513 4.137  -0.940 -1.101 H7  8JB 23 
8JB H8  H8  H 0 1 N N N N N N 46.231 62.909 11.282 5.201  -1.620 0.919  H8  8JB 24 
8JB H9  H9  H 0 1 N N N N N N 47.299 62.036 10.409 4.095  -0.789 1.843  H9  8JB 25 
8JB H11 H11 H 0 1 N N N N N N 46.866 64.743 12.696 2.306  0.576  0.814  H11 8JB 26 
8JB H12 H12 H 0 1 N N N N N N 48.189 63.853 13.524 2.265  0.681  -0.962 H12 8JB 27 
8JB H13 H13 H 0 1 N N N N N N 50.864 67.971 16.799 -3.560 -0.513 1.433  H13 8JB 28 
8JB H14 H14 H 0 1 N N N N N N 48.364 65.301 18.194 -5.028 2.671  0.691  H14 8JB 29 
8JB H15 H15 H 0 1 N N N N N N 50.998 61.968 12.052 5.619  2.323  -1.149 H15 8JB 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8JB O  C   DOUB N N 1  
8JB N  CA  SING N N 2  
8JB C  CA  SING N N 3  
8JB CA CB  SING N N 4  
8JB CB S   SING N N 5  
8JB S  C3  SING N N 6  
8JB C3 C4  SING N N 7  
8JB C3 N2  DOUB N N 8  
8JB C4 C5  SING N N 9  
8JB N2 O3  SING N N 10 
8JB O3 C5  SING N N 11 
8JB C5 C2  SING N N 12 
8JB O1 C1  DOUB N N 13 
8JB C2 C1  SING N N 14 
8JB C2 N3  SING N N 15 
8JB C1 O2  SING N N 16 
8JB C  O4  SING N N 17 
8JB C4 H1  SING N N 18 
8JB C4 H2  SING N N 19 
8JB C5 H3  SING N N 20 
8JB N3 H4  SING N N 21 
8JB N3 H5  SING N N 22 
8JB CA H7  SING N N 23 
8JB N  H8  SING N N 24 
8JB N  H9  SING N N 25 
8JB CB H11 SING N N 26 
8JB CB H12 SING N N 27 
8JB C2 H13 SING N N 28 
8JB O2 H14 SING N N 29 
8JB O4 H15 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8JB InChI            InChI                1.03  "InChI=1S/C8H13N3O5S/c9-3(7(12)13)2-17-5-1-4(16-11-5)6(10)8(14)15/h3-4,6H,1-2,9-10H2,(H,12,13)(H,14,15)/t3-,4-,6-/m0/s1" 
8JB InChIKey         InChI                1.03  BTLNMJRNISORTP-FKZODXBYSA-N                                                                                              
8JB SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CSC1=NO[C@@H](C1)[C@H](N)C(O)=O)C(O)=O"                                                                         
8JB SMILES           CACTVS               3.385 "N[CH](CSC1=NO[CH](C1)[CH](N)C(O)=O)C(O)=O"                                                                              
8JB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@H](ON=C1SC[C@@H](C(=O)O)N)[C@@H](C(=O)O)N"                                                                         
8JB SMILES           "OpenEye OEToolkits" 2.0.6 "C1C(ON=C1SCC(C(=O)O)N)C(C(=O)O)N"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           8JB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-[[(5~{S})-5-[(1~{S})-1-azanyl-2-oxidanyl-2-oxidanylidene-ethyl]-4,5-dihydro-1,2-oxazol-3-yl]sulfanyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8JB "Create component"       2017-02-08 EBI  
8JB "Modify parent residue"  2017-02-08 EBI  
8JB "Initial release"        2017-04-05 RCSB 
8JB "Modify one letter code" 2019-05-07 EBI  
8JB "Modify PCM"             2024-09-27 PDBE 
# 
