data_BAB
# 
_chem_comp.id                                    BAB 
_chem_comp.name                                  "BIS(5-AMIDINO-BENZIMIDAZOLYL)METHANE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    3 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        335.386 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BAB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye/OEToolkits V1.4.2" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BAB C1     C1     C 0 1 Y N N 8.576 0.361  31.692 -2.740 -9.769  -1.633 C1     BAB 1  
BAB C2     C2     C 0 1 Y N N 8.627 0.553  33.111 -1.951 -9.822  -2.784 C2     BAB 2  
BAB C3     C3     C 0 1 Y N N 8.349 1.800  33.665 -1.906 -8.745  -3.678 C3     BAB 3  
BAB C4     C4     C 0 1 Y N N 8.002 2.911  32.824 -2.675 -7.604  -3.392 C4     BAB 4  
BAB C5     C5     C 0 1 Y N N 7.949 2.732  31.409 -3.451 -7.581  -2.237 C5     BAB 5  
BAB C6     C6     C 0 1 Y N N 8.231 1.461  30.843 -3.511 -8.642  -1.333 C6     BAB 6  
BAB C7     C7     C 0 1 N N N 8.881 -0.983 31.103 -2.763 -10.908 -0.728 C7     BAB 7  
BAB C8     C8     C 0 1 Y N N 7.449 4.841  31.928 -3.632 -5.733  -3.380 C8     BAB 8  
BAB C9     C9     C 0 1 N N N 7.069 6.309  31.746 -4.122 -4.343  -3.709 C9     BAB 9  
BAB N1     N1     N 1 1 N N N 8.837 -1.162 29.809 -2.578 -12.213 -1.145 N1     BAB 10 
BAB N2     N2     N 0 1 N N N 9.214 -2.045 31.922 -2.972 -10.792 0.633  N2     BAB 11 
BAB N3     N3     N 0 1 Y N N 7.690 4.224  33.063 -2.807 -6.427  -4.094 N3     BAB 12 
BAB N4     N4     N 0 1 Y N N 7.593 3.966  30.886 -4.060 -6.352  -2.259 N4     BAB 13 
BAB "C1'"  "C1'"  C 0 1 Y N N 6.817 9.168  37.172 -0.207 -0.096  -1.989 "C1'"  BAB 14 
BAB "C2'"  "C2'"  C 0 1 Y N N 6.482 10.286 36.335 -0.970 -0.107  -0.802 "C2'"  BAB 15 
BAB "C3'"  "C3'"  C 0 1 Y N N 6.408 10.134 34.949 -2.071 -0.956  -0.657 "C3'"  BAB 16 
BAB "C4'"  "C4'"  C 0 1 Y N N 6.665 8.855  34.349 -2.375 -1.775  -1.718 "C4'"  BAB 17 
BAB "C5'"  "C5'"  C 0 1 Y N N 6.999 7.737  35.174 -1.611 -1.764  -2.909 "C5'"  BAB 18 
BAB "C6'"  "C6'"  C 0 1 Y N N 7.071 7.901  36.576 -0.526 -0.933  -3.062 "C6'"  BAB 19 
BAB "C7'"  "C7'"  C 0 1 N N N 6.894 9.330  38.659 0.932  0.803   -2.096 "C7'"  BAB 20 
BAB "C8'"  "C8'"  C 0 1 Y N N 6.974 7.122  33.037 -3.264 -3.276  -3.144 "C8'"  BAB 21 
BAB "N1'"  "N1'"  N 1 1 N N N 7.198 8.309  39.423 1.003  2.020   -1.445 "N1'"  BAB 22 
BAB "N2'"  "N2'"  N 0 1 N N N 6.648 10.555 39.237 2.050  0.524   -2.860 "N2'"  BAB 23 
BAB "N3'"  "N3'"  N 1 1 Y N N 6.672 8.398  33.070 -3.397 -2.719  -1.880 "N3'"  BAB 24 
BAB "N4'"  "N4'"  N 0 1 Y N N 7.186 6.663  34.309 -2.174 -2.701  -3.783 "N4'"  BAB 25 
BAB H2     H2     H 0 1 N N N 8.883 -0.275 33.755 -1.358 -10.708 -3.001 H2     BAB 26 
BAB H3     H3     H 0 1 N N N 8.395 1.933  34.736 -1.290 -8.795  -4.570 H3     BAB 27 
BAB H6     H6     H 0 1 N N N 8.185 1.324  29.773 -4.128 -8.590  -0.441 H6     BAB 28 
BAB H91    1H9    H 0 1 N N N 6.062 6.314  31.303 -4.182 -4.236  -4.802 H91    BAB 29 
BAB H92    2H9    H 0 1 N N N 7.839 6.776  31.115 -5.153 -4.221  -3.347 H92    BAB 30 
BAB HN21   1HN2   H 0 0 N N N 9.432 -2.971 31.614 -2.988 -11.605 1.241  HN21   BAB 31 
BAB HN22   2HN2   H 0 0 N N N 9.201 -1.736 32.873 -3.087 -9.891  1.082  HN22   BAB 32 
BAB HN4    HN4    H 0 1 N N N 7.464 4.179  29.917 -4.702 -5.994  -1.565 HN4    BAB 33 
BAB "H2'"  "H2'"  H 0 1 N N N 6.286 11.250 36.780 -0.703 0.554   0.021  "H2'"  BAB 34 
BAB "H3'"  "H3'"  H 0 1 N N N 6.157 10.980 34.327 -2.655 -0.962  0.256  "H3'"  BAB 35 
BAB "H6'"  "H6'"  H 0 1 N N N 7.321 7.057  37.201 0.056  -0.930  -3.978 "H6'"  BAB 36 
BAB "H2'1" "1H2'" H 0 0 N N N 6.678 10.753 40.217 2.829  1.171   -2.921 "H2'1" BAB 37 
BAB "H2'2" "2H2'" H 0 0 N N N 6.434 11.215 38.517 2.150  -0.350  -3.364 "H2'2" BAB 38 
BAB "HN4'" "'HN4" H 0 0 N N N 7.430 5.729  34.569 -1.822 -2.907  -4.705 "HN4'" BAB 39 
BAB HN1    "1H1'" H 0 1 N N N 7.200 8.609  40.377 1.808  2.630   -1.535 HN1    BAB 40 
BAB HN2    "2H1'" H 0 1 N N N 7.395 7.382  39.104 0.263  2.338   -0.827 HN2    BAB 41 
BAB HN3    "'HN3" H 0 1 N N N 6.474 8.957  32.265 -4.087 -2.941  -1.180 HN3    BAB 42 
BAB HN5    1HN1   H 0 1 N N N 9.068 -2.114 29.606 -2.599 -12.991 -0.495 HN5    BAB 43 
BAB HN6    2HN1   H 0 1 N N N 8.610 -0.462 29.132 -2.386 -12.440 -2.115 HN6    BAB 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BAB C1    C2     SING Y N 1  
BAB C1    C6     DOUB Y N 2  
BAB C1    C7     SING N N 3  
BAB C2    C3     DOUB Y N 4  
BAB C2    H2     SING N N 5  
BAB C3    C4     SING Y N 6  
BAB C3    H3     SING N N 7  
BAB C4    C5     DOUB Y N 8  
BAB C4    N3     SING Y N 9  
BAB C5    C6     SING Y N 10 
BAB C5    N4     SING Y N 11 
BAB C6    H6     SING N N 12 
BAB C7    N1     DOUB N Z 13 
BAB C7    N2     SING N N 14 
BAB C8    C9     SING N N 15 
BAB C8    N3     DOUB Y N 16 
BAB C8    N4     SING Y N 17 
BAB C9    "C8'"  SING N N 18 
BAB C9    H91    SING N N 19 
BAB C9    H92    SING N N 20 
BAB N2    HN21   SING N N 21 
BAB N2    HN22   SING N N 22 
BAB N4    HN4    SING N N 23 
BAB "C1'" "C2'"  SING Y N 24 
BAB "C1'" "C6'"  DOUB Y N 25 
BAB "C1'" "C7'"  SING N N 26 
BAB "C2'" "C3'"  DOUB Y N 27 
BAB "C2'" "H2'"  SING N N 28 
BAB "C3'" "C4'"  SING Y N 29 
BAB "C3'" "H3'"  SING N N 30 
BAB "C4'" "C5'"  DOUB Y N 31 
BAB "C4'" "N3'"  SING Y N 32 
BAB "C5'" "C6'"  SING Y N 33 
BAB "C5'" "N4'"  SING Y N 34 
BAB "C6'" "H6'"  SING N N 35 
BAB "C7'" "N1'"  DOUB N Z 36 
BAB "C7'" "N2'"  SING N N 37 
BAB "C8'" "N3'"  DOUB Y N 38 
BAB "C8'" "N4'"  SING Y N 39 
BAB "N2'" "H2'1" SING N N 40 
BAB "N2'" "H2'2" SING N N 41 
BAB "N4'" "HN4'" SING N N 42 
BAB HN1   "N1'"  SING N N 43 
BAB HN3   "N3'"  SING N N 44 
BAB HN5   N1     SING N N 45 
BAB HN6   N1     SING N N 46 
BAB HN2   "N1'"  SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BAB SMILES           ACDLabs              10.04 "n2c1ccc(cc1nc2Cc4[nH+]c3ccc(C(=[NH2+])\N)cc3n4)\C(=[NH2+])N"                                                                                          
BAB SMILES_CANONICAL CACTVS               3.341 "NC(=[NH2+])c1ccc2nc(Cc3[nH]c4cc(ccc4[nH+]3)C(N)=[NH2+])[nH]c2c1"                                                                                      
BAB SMILES           CACTVS               3.341 "NC(=[NH2+])c1ccc2nc(Cc3[nH]c4cc(ccc4[nH+]3)C(N)=[NH2+])[nH]c2c1"                                                                                      
BAB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)[nH]c([nH+]2)Cc3[nH]c4cc(ccc4n3)C(=[NH2+])N"                                                                                    
BAB SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc2c(cc1C(=[NH2+])N)[nH]c([nH+]2)Cc3[nH]c4cc(ccc4n3)C(=[NH2+])N"                                                                                    
BAB InChI            InChI                1.03  "InChI=1S/C17H16N8/c18-16(19)8-1-3-10-12(5-8)24-14(22-10)7-15-23-11-4-2-9(17(20)21)6-13(11)25-15/h1-6H,7H2,(H3,18,19)(H3,20,21)(H,22,24)(H,23,25)/p+3" 
BAB InChIKey         InChI                1.03  QZKOOEFIMWKZPK-UHFFFAOYSA-Q                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BAB "SYSTEMATIC NAME" ACDLabs              10.04 "6-[amino(iminio)methyl]-2-({6-[amino(iminio)methyl]-1H-benzimidazol-2-yl}methyl)-1H-benzimidazol-3-ium"                  
BAB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[2-[[6-(amino-azaniumylidene-methyl)-1H-benzimidazol-3-ium-2-yl]methyl]-3H-benzimidazol-5-yl]methylidene]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BAB "Create component"     1999-07-08 RCSB 
BAB "Modify aromatic_flag" 2011-06-04 RCSB 
BAB "Modify descriptor"    2011-06-04 RCSB 
# 
