data_GMB
#

_chem_comp.id                                   GMB
_chem_comp.name                                 "1,7-di-O-phosphono-L-glycero-beta-D-manno-heptopyranose"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H16 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;1,7-di-O-phosphono-L-glycero-beta-D-manno-heptose; 1,7-di-O-phosphono-L-glycero-D-manno-heptose;
1,7-di-O-phosphono-L-glycero-manno-heptose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-01-11
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.142
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GMB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3L8G
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GMB  "1,7-di-O-phosphono-L-glycero-beta-D-manno-heptose"  PDB  ?  
2  GMB  "1,7-di-O-phosphono-L-glycero-D-manno-heptose"       PDB  ?  
3  GMB  "1,7-di-O-phosphono-L-glycero-manno-heptose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GMB  C1    C1    C  0  1  N  N  S  -12.965   1.025  -24.330   2.197  -0.040   0.234  C1    GMB   1  
GMB  O1    O1    O  0  1  N  N  N  -11.870   0.227  -24.653   2.622  -1.218  -0.454  O1    GMB   2  
GMB  P1    P1    P  0  1  N  N  N  -10.445   0.566  -24.315   2.406  -2.702   0.133  P1    GMB   3  
GMB  C2    C2    C  0  1  N  N  S  -14.332   0.341  -24.493   3.126   1.123  -0.123  C2    GMB   4  
GMB  O2    O2    O  0  1  N  N  N  -14.569  -0.863  -23.757   3.124   1.319  -1.539  O2    GMB   5  
GMB  P2    P2    P  0  1  N  N  N  -13.025   5.871  -19.517  -4.456  -0.464   0.055  P2    GMB   6  
GMB  C3    C3    C  0  1  N  N  S  -15.477   1.350  -24.469   2.629   2.395   0.570  C3    GMB   7  
GMB  O3    O3    O  0  1  N  N  N  -16.774   0.827  -24.732   3.447   3.501   0.183  O3    GMB   8  
GMB  C4    C4    C  0  1  N  N  S  -15.341   1.878  -23.056   1.179   2.659   0.150  C4    GMB   9  
GMB  O4    O4    O  0  1  N  N  N  -16.423   2.651  -22.573   0.681   3.803   0.846  O4    GMB  10  
GMB  C5    C5    C  0  1  N  N  R  -13.995   2.578  -23.010   0.326   1.436   0.497  C5    GMB  11  
GMB  O5    O5    O  0  1  N  N  N  -12.961   1.595  -23.019   0.861   0.283  -0.155  O5    GMB  12  
GMB  C6    C6    C  0  1  N  N  S  -14.012   3.437  -21.764  -1.112   1.668   0.026  C6    GMB  13  
GMB  O6    O6    O  0  1  N  N  N  -14.227   2.668  -20.575  -1.111   1.986  -1.367  O6    GMB  14  
GMB  C7    C7    C  0  1  N  N  N  -12.954   4.519  -21.663  -1.935   0.400   0.259  C7    GMB  15  
GMB  O7    O7    O  0  1  N  N  N  -13.317   5.720  -20.978  -3.303   0.652  -0.071  O7    GMB  16  
GMB  OP1   OP1   O  0  1  N  N  N  -10.138   2.014  -24.519   0.830  -3.021   0.216  OP1   GMB  17  
GMB  OP2   OP2   O  0  1  N  N  N  -10.239   0.199  -22.881   3.119  -3.771  -0.836  OP2   GMB  18  
GMB  OP3   OP3   O  0  1  N  N  N   -9.540  -0.247  -25.170   2.999  -2.789   1.486  OP3   GMB  19  
GMB  OP4   OP4   O  0  1  N  N  N  -13.499   4.643  -18.831  -4.166  -1.655  -0.989  OP4   GMB  20  
GMB  OP5   OP5   O  0  1  N  N  N  -11.566   6.047  -19.275  -4.468  -1.008   1.432  OP5   GMB  21  
GMB  OP6   OP6   O  0  1  N  N  N  -13.799   7.047  -18.992  -5.885   0.201  -0.272  OP6   GMB  22  
GMB  H1    H1    H  0  1  N  N  N  -12.836   1.823  -25.076   2.230  -0.214   1.309  H1    GMB  23  
GMB  H2    H2    H  0  1  N  N  N  -14.290  -0.081  -25.508   4.138   0.897   0.212  H2    GMB  24  
GMB  HO2   HO2   H  0  1  N  Y  N  -15.444  -1.182  -23.945   3.424   0.550  -2.043  HO2   GMB  25  
GMB  H3    H3    H  0  1  N  N  N  -15.399   2.097  -25.273   2.677   2.264   1.651  H3    GMB  26  
GMB  HO3   HO3   H  0  1  N  Y  N  -17.413   1.529  -24.694   4.381   3.399   0.413  HO3   GMB  27  
GMB  H4    H4    H  0  1  N  N  N  -15.382   1.041  -22.343   1.138   2.839  -0.924  H4    GMB  28  
GMB  HO4   HO4   H  0  1  N  Y  N  -16.240   2.932  -21.684   1.179   4.614   0.677  HO4   GMB  29  
GMB  H5    H5    H  0  1  N  N  N  -13.803   3.223  -23.880   0.334   1.281   1.576  H5    GMB  30  
GMB  H6    H6    H  0  1  N  N  N  -14.908   4.064  -21.882  -1.549   2.494   0.587  H6    GMB  31  
GMB  HO6   HO6   H  0  1  N  Y  N  -14.230   3.245  -19.820  -0.735   1.294  -1.928  HO6   GMB  32  
GMB  H71   H7    H  0  1  N  N  N  -12.100   4.085  -21.122  -1.552  -0.403  -0.370  H71   GMB  33  
GMB  H72   H7A   H  0  1  N  N  N  -12.685   4.803  -22.691  -1.863   0.107   1.307  H72   GMB  34  
GMB  HOP1  HOP1  H  0  0  N  N  N   -9.433   2.103  -25.149   0.375  -2.982  -0.636  HOP1  GMB  35  
GMB  HOP2  HOP2  H  0  0  N  N  N   -9.573  -0.476  -22.819   3.029  -4.689  -0.544  HOP2  GMB  36  
GMB  HOP4  HOP4  H  0  0  N  N  N  -12.771   4.229  -18.383  -4.144  -1.371  -1.913  HOP4  GMB  37  
GMB  HOP6  HOP6  H  0  0  N  N  N  -13.199   7.675  -18.607  -6.628  -0.416  -0.215  HOP6  GMB  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GMB  O1   C1    SING  N  N   1  
GMB  C2   C1    SING  N  N   2  
GMB  C1   O5    SING  N  N   3  
GMB  C1   H1    SING  N  N   4  
GMB  O1   P1    SING  N  N   5  
GMB  OP3  P1    DOUB  N  N   6  
GMB  OP1  P1    SING  N  N   7  
GMB  P1   OP2   SING  N  N   8  
GMB  C2   C3    SING  N  N   9  
GMB  C2   O2    SING  N  N  10  
GMB  C2   H2    SING  N  N  11  
GMB  O2   HO2   SING  N  N  12  
GMB  O7   P2    SING  N  N  13  
GMB  P2   OP5   DOUB  N  N  14  
GMB  P2   OP6   SING  N  N  15  
GMB  P2   OP4   SING  N  N  16  
GMB  O3   C3    SING  N  N  17  
GMB  C3   C4    SING  N  N  18  
GMB  C3   H3    SING  N  N  19  
GMB  O3   HO3   SING  N  N  20  
GMB  C4   C5    SING  N  N  21  
GMB  C4   O4    SING  N  N  22  
GMB  C4   H4    SING  N  N  23  
GMB  O4   HO4   SING  N  N  24  
GMB  O5   C5    SING  N  N  25  
GMB  C5   C6    SING  N  N  26  
GMB  C5   H5    SING  N  N  27  
GMB  C6   C7    SING  N  N  28  
GMB  C6   O6    SING  N  N  29  
GMB  C6   H6    SING  N  N  30  
GMB  O6   HO6   SING  N  N  31  
GMB  C7   O7    SING  N  N  32  
GMB  C7   H71   SING  N  N  33  
GMB  C7   H72   SING  N  N  34  
GMB  OP1  HOP1  SING  N  N  35  
GMB  OP2  HOP2  SING  N  N  36  
GMB  OP4  HOP4  SING  N  N  37  
GMB  OP6  HOP6  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GMB  SMILES_CANONICAL  CACTVS                3.352  "O[C@@H](CO[P](O)(O)=O)[C@H]1O[C@@H](O[P](O)(O)=O)[C@@H](O)[C@@H](O)[C@@H]1O"  
GMB  SMILES            CACTVS                3.352  "O[CH](CO[P](O)(O)=O)[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
GMB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)OP(=O)(O)O)O)O)O)O)OP(=O)(O)O"  
GMB  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O)OP(=O)(O)O"  
GMB  InChI             InChI                 1.03   "InChI=1S/C7H16O13P2/c8-2(1-18-21(12,13)14)6-4(10)3(9)5(11)7(19-6)20-22(15,16)17/h2-11H,1H2,(H2,12,13,14)(H2,15,16,17)/t2-,3-,4-,5-,6+,7-/m0/s1"  
GMB  InChIKey          InChI                 1.03   LMTGTTLGDUACSJ-QQABCQGCSA-N  
#
_pdbx_chem_comp_identifier.comp_id          GMB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "[(2S)-2-hydroxy-2-[(2R,3S,4S,5S,6S)-3,4,5-trihydroxy-6-phosphonooxy-oxan-2-yl]ethyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GMB  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GMB  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GMB  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
GMB  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GMB  "Create component"          2010-01-11  RCSB  
GMB  "Modify descriptor"         2011-06-04  RCSB  
GMB  "Other modification"        2020-07-03  RCSB  
GMB  "Modify synonyms"           2020-07-17  RCSB  
GMB  "Modify internal type"      2020-07-17  RCSB  
GMB  "Modify linking type"       2020-07-17  RCSB  
GMB  "Modify atom id"            2020-07-17  RCSB  
GMB  "Modify component atom id"  2020-07-17  RCSB  
GMB  "Modify leaving atom flag"  2020-07-17  RCSB  
##
