data_KJB
# 
_chem_comp.id                                    KJB 
_chem_comp.name                                  "3,3,3-tris(fluoranyl)-1-[4-[(1~{R})-1-[2-[[(2~{S})-5-(5-propan-2-yloxypyrimidin-4-yl)-2,3-dihydro-1~{H}-benzimidazol-2-yl]amino]pyridin-4-yl]ethyl]piperazin-1-yl]propan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H33 F3 N8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-05-22 
_chem_comp.pdbx_modified_date                    2022-07-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        570.609 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KJB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6RSU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KJB C4  C1  C 0 1 Y N N -3.888 -29.669 -9.024  -3.052 3.658  -0.676 C4  KJB 1  
KJB C14 C2  C 0 1 N N N -4.930 -22.196 -8.454  -7.524 -3.509 -0.896 C14 KJB 2  
KJB C5  C3  C 0 1 Y N N -5.137 -29.307 -9.488  -2.431 2.963  0.354  C5  KJB 3  
KJB C6  C4  C 0 1 N N R -6.273 -29.143 -8.543  -3.240 2.363  1.475  C6  KJB 4  
KJB C11 C5  C 0 1 N N N -6.468 -24.091 -8.683  -6.992 -1.331 0.164  C11 KJB 5  
KJB C8  C6  C 0 1 N N N -6.050 -27.066 -7.394  -4.170 0.797  -0.121 C8  KJB 6  
KJB C9  C7  C 0 1 N N N -6.823 -25.816 -7.005  -5.475 0.346  -0.785 C9  KJB 7  
KJB C13 C8  C 0 1 N N N -5.503 -23.377 -7.667  -6.726 -2.211 -1.031 C13 KJB 8  
KJB N2  N1  N 0 1 Y N N -3.217 -29.816 -11.200 -0.970 4.053  -1.690 N2  KJB 9  
KJB C3  C9  C 0 1 Y N N -2.854 -29.909 -9.914  -2.283 4.192  -1.690 C3  KJB 10 
KJB C1  C10 C 0 1 Y N N -4.310 -29.399 -11.724 -0.342 3.402  -0.723 C1  KJB 11 
KJB C18 C11 C 0 1 N N N -7.951 -25.871 -9.245  -6.639 0.746  1.419  C18 KJB 12 
KJB C19 C12 C 0 1 N N N -7.120 -27.118 -9.590  -5.288 1.181  1.997  C19 KJB 13 
KJB C20 C13 C 0 1 N N N -5.735 -29.648 -7.186  -3.597 3.453  2.487  C20 KJB 14 
KJB C21 C14 C 0 1 Y N N -5.499 -29.272 -10.809 -1.055 2.835  0.328  C21 KJB 15 
KJB C23 C15 C 0 1 N N S -3.689 -30.099 -13.859 1.745  2.561  0.303  C23 KJB 16 
KJB C25 C16 C 0 1 Y N N -3.118 -30.296 -15.797 2.925  0.608  -0.060 C25 KJB 17 
KJB C26 C17 C 0 1 Y N N -1.929 -30.319 -14.900 3.850  1.646  0.032  C26 KJB 18 
KJB C27 C18 C 0 1 Y N N -0.621 -30.576 -15.309 5.205  1.377  -0.096 C27 KJB 19 
KJB C28 C19 C 0 1 Y N N -0.383 -30.884 -16.627 5.639  0.071  -0.316 C28 KJB 20 
KJB C29 C20 C 0 1 Y N N -1.425 -30.902 -17.531 4.709  -0.964 -0.407 C29 KJB 21 
KJB C30 C21 C 0 1 Y N N -2.719 -30.658 -17.078 3.363  -0.695 -0.279 C30 KJB 22 
KJB C31 C22 C 0 1 Y N N 0.884  -31.142 -17.117 7.086  -0.216 -0.453 C31 KJB 23 
KJB C32 C23 C 0 1 Y N N 2.052  -31.071 -16.389 7.625  -1.415 0.037  C32 KJB 24 
KJB C33 C24 C 0 1 Y N N 3.257  -31.318 -17.029 8.987  -1.633 -0.119 C33 KJB 25 
KJB C35 C25 C 0 1 Y N N 2.152  -31.512 -19.012 9.184  0.405  -1.169 C35 KJB 26 
KJB C38 C26 C 0 1 N N N 3.116  -31.390 -14.415 7.488  -3.470 1.224  C38 KJB 27 
KJB C39 C27 C 0 1 N N N 3.112  -32.909 -14.605 6.621  -4.041 2.348  C39 KJB 28 
KJB C40 C28 C 0 1 N N N 2.490  -30.949 -13.112 7.698  -4.538 0.149  C40 KJB 29 
KJB F15 F1  F 0 1 N N N -4.027 -21.506 -7.786  -8.890 -3.212 -0.832 F15 KJB 30 
KJB F16 F2  F 0 1 N N N -5.934 -21.385 -8.741  -7.277 -4.325 -2.005 F16 KJB 31 
KJB F17 F3  F 0 1 N N N -4.464 -22.485 -9.643  -7.136 -4.176 0.270  F17 KJB 32 
KJB N10 N2  N 0 1 N N N -7.033 -25.188 -8.254  -6.393 -0.128 0.262  N10 KJB 33 
KJB N22 N3  N 0 1 N N N -4.365 -29.618 -13.088 1.042  3.280  -0.762 N22 KJB 34 
KJB N24 N4  N 0 1 N N N -3.956 -30.064 -14.983 1.629  1.113  0.099  N24 KJB 35 
KJB N34 N5  N 0 1 Y N N 3.286  -31.528 -18.329 9.723  -0.711 -0.720 N34 KJB 36 
KJB N36 N6  N 0 1 Y N N 0.988  -31.285 -18.430 7.897  0.656  -1.049 N36 KJB 37 
KJB N41 N7  N 0 1 N N N -2.156 -29.939 -13.688 3.181  2.859  0.254  N41 KJB 38 
KJB N7  N8  N 0 1 N N N -6.903 -27.857 -8.305  -4.472 1.778  0.930  N7  KJB 39 
KJB O12 O1  O 0 1 N N N -6.731 -23.608 -9.772  -7.747 -1.706 1.036  O12 KJB 40 
KJB O37 O2  O 0 1 N N N 2.016  -30.857 -15.067 6.835  -2.337 0.648  O37 KJB 41 
KJB H1  H1  H 0 1 N N N -3.716 -29.766 -7.962  -4.125 3.777  -0.685 H1  KJB 42 
KJB H2  H2  H 0 1 N N N -7.059 -29.848 -8.852  -2.656 1.586  1.969  H2  KJB 43 
KJB H3  H3  H 0 1 N N N -5.814 -27.655 -6.496  -3.669 -0.065 0.320  H3  KJB 44 
KJB H4  H4  H 0 1 N N N -5.117 -26.786 -7.904  -3.520 1.253  -0.868 H4  KJB 45 
KJB H5  H5  H 0 1 N N N -6.233 -25.176 -6.332  -5.925 1.185  -1.314 H5  KJB 46 
KJB H6  H6  H 0 1 N N N -7.778 -26.073 -6.523  -5.268 -0.462 -1.488 H6  KJB 47 
KJB H7  H7  H 0 1 N N N -6.058 -23.025 -6.785  -5.662 -2.442 -1.081 H7  KJB 48 
KJB H8  H8  H 0 1 N N N -4.701 -24.058 -7.348  -7.028 -1.690 -1.940 H8  KJB 49 
KJB H9  H9  H 0 1 N N N -1.849 -30.149 -9.600  -2.762 4.729  -2.496 H9  KJB 50 
KJB H10 H10 H 0 1 N N N -8.129 -25.244 -10.131 -7.203 0.201  2.176  H10 KJB 51 
KJB H11 H11 H 0 1 N N N -8.914 -26.140 -8.787  -7.205 1.622  1.102  H11 KJB 52 
KJB H12 H12 H 0 1 N N N -7.665 -27.752 -10.305 -5.450 1.916  2.785  H12 KJB 53 
KJB H13 H13 H 0 1 N N N -6.154 -26.822 -10.025 -4.772 0.314  2.408  H13 KJB 54 
KJB H14 H14 H 0 1 N N N -6.522 -29.560 -6.423  -4.182 3.019  3.298  H14 KJB 55 
KJB H15 H15 H 0 1 N N N -5.433 -30.701 -7.281  -2.683 3.887  2.891  H15 KJB 56 
KJB H16 H16 H 0 1 N N N -4.866 -29.043 -6.888  -4.181 4.230  1.994  H16 KJB 57 
KJB H17 H17 H 0 1 N N N -6.517 -29.166 -11.153 -0.539 2.304  1.115  H17 KJB 58 
KJB H18 H18 H 0 1 N N N -3.782 -31.170 -13.627 1.337  2.839  1.276  H18 KJB 59 
KJB H19 H19 H 0 1 N N N 0.193  -30.534 -14.601 5.923  2.181  -0.025 H19 KJB 60 
KJB H20 H20 H 0 1 N N N -1.240 -31.103 -18.576 5.043  -1.977 -0.578 H20 KJB 61 
KJB H21 H21 H 0 1 N N N -3.507 -30.763 -17.810 2.645  -1.499 -0.350 H21 KJB 62 
KJB H22 H22 H 0 1 N N N 4.175  -31.338 -16.460 9.440  -2.543 0.245  H22 KJB 63 
KJB H23 H23 H 0 1 N N N 2.179  -31.690 -20.077 9.815  1.132  -1.657 H23 KJB 64 
KJB H24 H24 H 0 1 N N N 4.087  -30.919 -14.628 8.454  -3.167 1.628  H24 KJB 65 
KJB H25 H25 H 0 1 N N N 3.981  -33.346 -14.092 7.119  -4.906 2.787  H25 KJB 66 
KJB H26 H26 H 0 1 N N N 2.188  -33.329 -14.182 6.472  -3.280 3.114  H26 KJB 67 
KJB H27 H27 H 0 1 N N N 3.164  -33.144 -15.678 5.656  -4.345 1.944  H27 KJB 68 
KJB H28 H28 H 0 1 N N N 3.147  -31.230 -12.275 8.315  -4.131 -0.652 H28 KJB 69 
KJB H29 H29 H 0 1 N N N 2.355  -29.857 -13.121 8.196  -5.403 0.588  H29 KJB 70 
KJB H30 H30 H 0 1 N N N 1.512  -31.438 -12.991 6.732  -4.842 -0.255 H30 KJB 71 
KJB H31 H31 H 0 1 N N N -4.488 -28.695 -13.452 1.543  3.671  -1.496 H31 KJB 72 
KJB H32 H32 H 0 1 N N N -4.296 -29.143 -15.172 0.806  0.600  0.077  H32 KJB 73 
KJB H33 H33 H 0 1 N N N -1.765 -30.548 -12.998 3.592  3.731  0.354  H33 KJB 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KJB C35 N36 DOUB Y N 1  
KJB C35 N34 SING Y N 2  
KJB N36 C31 SING Y N 3  
KJB N34 C33 DOUB Y N 4  
KJB C29 C30 DOUB Y N 5  
KJB C29 C28 SING Y N 6  
KJB C31 C28 SING N N 7  
KJB C31 C32 DOUB Y N 8  
KJB C30 C25 SING Y N 9  
KJB C33 C32 SING Y N 10 
KJB C28 C27 DOUB Y N 11 
KJB C32 O37 SING N N 12 
KJB C25 N24 SING N N 13 
KJB C25 C26 DOUB Y N 14 
KJB C27 C26 SING Y N 15 
KJB O37 C38 SING N N 16 
KJB N24 C23 SING N N 17 
KJB C26 N41 SING N N 18 
KJB C39 C38 SING N N 19 
KJB C38 C40 SING N N 20 
KJB C23 N41 SING N N 21 
KJB C23 N22 SING N N 22 
KJB N22 C1  SING N N 23 
KJB C1  N2  DOUB Y N 24 
KJB C1  C21 SING Y N 25 
KJB N2  C3  SING Y N 26 
KJB C21 C5  DOUB Y N 27 
KJB C3  C4  DOUB Y N 28 
KJB O12 C11 DOUB N N 29 
KJB F17 C14 SING N N 30 
KJB C19 C18 SING N N 31 
KJB C19 N7  SING N N 32 
KJB C5  C4  SING Y N 33 
KJB C5  C6  SING N N 34 
KJB C18 N10 SING N N 35 
KJB F16 C14 SING N N 36 
KJB C11 N10 SING N N 37 
KJB C11 C13 SING N N 38 
KJB C6  N7  SING N N 39 
KJB C6  C20 SING N N 40 
KJB C14 F15 SING N N 41 
KJB C14 C13 SING N N 42 
KJB N7  C8  SING N N 43 
KJB N10 C9  SING N N 44 
KJB C8  C9  SING N N 45 
KJB C4  H1  SING N N 46 
KJB C6  H2  SING N N 47 
KJB C8  H3  SING N N 48 
KJB C8  H4  SING N N 49 
KJB C9  H5  SING N N 50 
KJB C9  H6  SING N N 51 
KJB C13 H7  SING N N 52 
KJB C13 H8  SING N N 53 
KJB C3  H9  SING N N 54 
KJB C18 H10 SING N N 55 
KJB C18 H11 SING N N 56 
KJB C19 H12 SING N N 57 
KJB C19 H13 SING N N 58 
KJB C20 H14 SING N N 59 
KJB C20 H15 SING N N 60 
KJB C20 H16 SING N N 61 
KJB C21 H17 SING N N 62 
KJB C23 H18 SING N N 63 
KJB C27 H19 SING N N 64 
KJB C29 H20 SING N N 65 
KJB C30 H21 SING N N 66 
KJB C33 H22 SING N N 67 
KJB C35 H23 SING N N 68 
KJB C38 H24 SING N N 69 
KJB C39 H25 SING N N 70 
KJB C39 H26 SING N N 71 
KJB C39 H27 SING N N 72 
KJB C40 H28 SING N N 73 
KJB C40 H29 SING N N 74 
KJB C40 H30 SING N N 75 
KJB N22 H31 SING N N 76 
KJB N24 H32 SING N N 77 
KJB N41 H33 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KJB SMILES           ACDLabs              12.01 "CC(c1ccnc(NC2Nc3ccc(cc3N2)c2ncncc2OC(C)C)c1)N1CCN(CC1)C(=O)CC(F)(F)F"                                                                                                                                                        
KJB InChI            InChI                1.06  "InChI=1S/C28H33F3N8O2/c1-17(2)41-23-15-32-16-34-26(23)20-4-5-21-22(12-20)36-27(35-21)37-24-13-19(6-7-33-24)18(3)38-8-10-39(11-9-38)25(40)14-28(29,30)31/h4-7,12-13,15-18,27,35-36H,8-11,14H2,1-3H3,(H,33,37)/t18-,27+/m1/s1" 
KJB InChIKey         InChI                1.06  PETZDHZEDSUUQC-CLYVBNDRSA-N                                                                                                                                                                                                   
KJB SMILES_CANONICAL CACTVS               3.385 "CC(C)Oc1cncnc1c2ccc3N[C@H](Nc4cc(ccn4)[C@@H](C)N5CCN(CC5)C(=O)CC(F)(F)F)Nc3c2"                                                                                                                                               
KJB SMILES           CACTVS               3.385 "CC(C)Oc1cncnc1c2ccc3N[CH](Nc4cc(ccn4)[CH](C)N5CCN(CC5)C(=O)CC(F)(F)F)Nc3c2"                                                                                                                                                  
KJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1ccnc(c1)N[C@H]2Nc3ccc(cc3N2)c4c(cncn4)OC(C)C)N5CCN(CC5)C(=O)CC(F)(F)F"                                                                                                                                              
KJB SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1cncnc1c2ccc3c(c2)NC(N3)Nc4cc(ccn4)C(C)N5CCN(CC5)C(=O)CC(F)(F)F"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KJB "SYSTEMATIC NAME" ACDLabs              12.01 "3,3,3-trifluoro-1-{4-[(1R)-1-(2-{[(2S,5M)-5-{5-[(propan-2-yl)oxy]pyrimidin-4-yl}-2,3-dihydro-1H-benzimidazol-2-yl]amino}pyridin-4-yl)ethyl]piperazin-1-yl}propan-1-one"         
KJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3,3,3-tris(fluoranyl)-1-[4-[(1~{R})-1-[2-[[(2~{S})-5-(5-propan-2-yloxypyrimidin-4-yl)-2,3-dihydro-1~{H}-benzimidazol-2-yl]amino]pyridin-4-yl]ethyl]piperazin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KJB "Create component"  2019-05-22 PDBE 
KJB "Initial release"   2020-04-01 RCSB 
KJB "Modify descriptor" 2022-07-26 RCSB 
# 
