data_LMB
# 
_chem_comp.id                                    LMB 
_chem_comp.name                                  "Leptomycin B, bound form" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H52 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        560.762 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LMB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HAT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LMB O6    O6    O 0 1 N N N N N N -47.439 67.417 31.610 -7.078 -3.672 0.873  O6    LMB 1  
LMB C24   C24   C 0 1 N N N N N N -47.292 68.071 32.662 -7.719 -2.894 1.552  C24   LMB 2  
LMB O5    O5    O 0 1 N N N N N N -48.202 68.102 33.512 -8.177 -3.274 2.762  O5    LMB 3  
LMB C23   C23   C 0 1 N N N N N N -46.040 68.814 32.937 -7.990 -1.538 1.057  C23   LMB 4  
LMB C22   C22   C 0 1 N N N N N N -44.953 68.723 32.146 -7.464 -1.133 -0.097 C22   LMB 5  
LMB C33   C33   C 0 1 N N N N N N -44.957 67.891 30.893 -6.726 -2.112 -0.973 C33   LMB 6  
LMB C21   C21   C 0 1 N N N N N N -43.706 69.504 32.500 -7.607 0.305  -0.526 C21   LMB 7  
LMB C20   C20   C 0 1 N N S N N N -43.396 70.550 31.428 -6.363 1.089  -0.104 C20   LMB 8  
LMB C32   C32   C 0 1 N N N N N N -42.102 71.276 31.781 -6.280 1.129  1.424  C32   LMB 9  
LMB C19   C19   C 0 1 N N R N N N -44.550 71.542 31.239 -6.451 2.516  -0.647 C19   LMB 10 
LMB O4    O4    O 0 1 N N N N N N -44.633 72.346 32.423 -7.552 3.192  -0.037 O4    LMB 11 
LMB C18   C18   C 0 1 N N S N N N -44.415 72.460 30.016 -5.155 3.264  -0.329 C18   LMB 12 
LMB C31   C31   C 0 1 N N N N N N -45.571 73.462 29.954 -5.290 4.726  -0.759 C31   LMB 13 
LMB C17   C17   C 0 1 N N N N N N -44.416 71.689 28.725 -4.011 2.626  -1.074 C17   LMB 14 
LMB O3    O3    O 0 1 N N N N N N -44.996 70.619 28.619 -4.208 2.085  -2.136 O3    LMB 15 
LMB C16   C16   C 0 1 N N R N N N -43.712 72.256 27.534 -2.620 2.662  -0.495 C16   LMB 16 
LMB C30   C30   C 0 1 N N N N N N -44.590 72.068 26.301 -1.942 3.980  -0.878 C30   LMB 17 
LMB C15   C15   C 0 1 N N N N N N -42.408 71.540 27.275 -1.818 1.508  -1.038 C15   LMB 18 
LMB C14   C14   C 0 1 N N N N N N -41.204 72.050 27.593 -1.396 0.549  -0.221 C14   LMB 19 
LMB C29   C29   C 0 1 N N N N N N -41.042 73.392 28.255 -1.802 0.563  1.230  C29   LMB 20 
LMB C13   C13   C 0 1 N N N N N N -40.026 71.238 27.234 -0.531 -0.525 -0.733 C13   LMB 21 
LMB C12   C12   C 0 1 N N N N N N -38.780 71.666 27.393 -0.109 -1.484 0.084  C12   LMB 22 
LMB C11   C11   C 0 1 N N N N N N -37.645 70.762 26.962 0.777  -2.585 -0.441 C11   LMB 23 
LMB C10   C10   C 0 1 N N R N N N -36.555 70.749 28.018 2.055  -2.654 0.397  C10   LMB 24 
LMB C28   C28   C 0 1 N N N N N N -37.019 69.986 29.254 1.705  -3.064 1.829  C28   LMB 25 
LMB C9    C9    C 0 1 N N N N N N -35.323 70.051 27.485 2.993  -3.670 -0.201 C9    LMB 26 
LMB C8    C8    C 0 1 N N N N N N -34.078 70.577 27.450 4.234  -3.321 -0.522 C8    LMB 27 
LMB C26   C26   C 0 1 N N N N N N -32.933 69.747 26.892 5.207  -4.362 -1.012 C26   LMB 28 
LMB C27   C27   C 0 1 N N N N N N -33.371 68.403 26.347 5.207  -4.381 -2.542 C27   LMB 29 
LMB C7    C7    C 0 1 N N N N N N -33.787 71.961 27.915 4.658  -1.918 -0.399 C7    LMB 30 
LMB C6    C6    C 0 1 N N N N N N -32.547 72.453 27.953 5.865  -1.549 -0.816 C6    LMB 31 
LMB C5    C5    C 0 1 N N R N N N -32.325 73.878 28.400 6.300  -0.112 -0.690 C5    LMB 32 
LMB O2    O2    O 0 1 N N N N N N -31.685 74.512 27.281 6.597  0.411  -1.986 O2    LMB 33 
LMB C4    C4    C 0 1 N N S N N N -31.460 74.091 29.646 7.548  -0.031 0.191  C4    LMB 34 
LMB C25   C25   C 0 1 N N N N N N -30.145 73.335 29.538 8.709  -0.746 -0.503 C25   LMB 35 
LMB C3    C3    C 0 1 N N N N N N -31.186 75.586 29.892 7.916  1.436  0.422  C3    LMB 36 
LMB C2    C2    C 0 1 N N N N N N -32.432 76.436 29.601 9.087  1.520  1.402  C2    LMB 37 
LMB C1    C1    C 0 1 N N N N N N -32.262 77.902 29.905 9.450  2.965  1.629  C1    LMB 38 
LMB "O1'" "O1'" O 0 1 N N N N N N -33.246 78.493 30.400 10.456 3.282  2.459  "O1'" LMB 39 
LMB O1    O1    O 0 1 N N N N N N -31.176 78.462 29.630 8.835  3.838  1.064  O1    LMB 40 
LMB H1    H1    H 0 1 N N N N N N -48.936 67.580 33.210 -7.970 -4.175 3.046  H1    LMB 41 
LMB H2    H2    H 0 1 N N N N N N -45.997 69.454 33.806 -8.617 -0.869 1.629  H2    LMB 42 
LMB H3    H3    H 0 1 N N N N N N -45.932 67.393 30.786 -5.691 -2.187 -0.641 H3    LMB 43 
LMB H4    H4    H 0 1 N N N N N N -44.779 68.539 30.022 -7.202 -3.090 -0.905 H4    LMB 44 
LMB H5    H5    H 0 1 N N N N N N -44.163 67.133 30.954 -6.752 -1.765 -2.006 H5    LMB 45 
LMB H6    H6    H 0 1 N N N N N N -42.857 68.809 32.582 -7.714 0.351  -1.610 H6    LMB 46 
LMB H7    H7    H 0 1 N N N N N N -43.860 70.011 33.464 -8.488 0.739  -0.055 H7    LMB 47 
LMB H8    H8    H 0 1 N N N N N N -43.242 70.024 30.474 -5.473 0.602  -0.503 H8    LMB 48 
LMB H9    H9    H 0 1 N N N N N N -41.293 70.542 31.911 -6.303 0.113  1.816  H9    LMB 49 
LMB H10   H10   H 0 1 N N N N N N -41.839 71.972 30.971 -5.352 1.615  1.725  H10   LMB 50 
LMB H11   H11   H 0 1 N N N N N N -42.240 71.838 32.716 -7.128 1.690  1.819  H11   LMB 51 
LMB H12   H12   H 0 1 N N N N N N -45.479 70.964 31.127 -6.597 2.485  -1.727 H12   LMB 52 
LMB H13   H13   H 0 1 N N N N N N -44.717 71.783 33.183 -7.489 3.257  0.926  H13   LMB 53 
LMB H14   H14   H 0 1 N N N N N N -43.471 73.018 30.099 -4.962 3.217  0.742  H14   LMB 54 
LMB H15   H15   H 0 1 N N N N N N -45.601 74.046 30.886 -5.570 4.771  -1.812 H15   LMB 55 
LMB H16   H16   H 0 1 N N N N N N -45.423 74.140 29.101 -6.059 5.212  -0.158 H16   LMB 56 
LMB H17   H17   H 0 1 N N N N N N -46.520 72.920 29.831 -4.339 5.238  -0.614 H17   LMB 57 
LMB H18   H18   H 0 1 N N N N N N -43.521 73.328 27.688 -2.677 2.586  0.591  H18   LMB 58 
LMB H19   H19   H 0 1 N N N N N N -45.552 72.578 26.454 -2.522 4.814  -0.485 H19   LMB 59 
LMB H20   H20   H 0 1 N N N N N N -44.084 72.495 25.422 -0.937 4.006  -0.459 H20   LMB 60 
LMB H21   H21   H 0 1 N N N N N N -44.766 70.995 26.137 -1.885 4.056  -1.964 H21   LMB 61 
LMB H22   H22   H 0 1 N N N N N N -42.444 70.566 26.809 -1.587 1.460  -2.092 H22   LMB 62 
LMB H23   H23   H 0 1 N N N N N N -42.033 73.833 28.438 -2.693 -0.051 1.363  H23   LMB 63 
LMB H24   H24   H 0 1 N N N N N N -40.513 73.267 29.212 -0.991 0.162  1.838  H24   LMB 64 
LMB H25   H25   H 0 1 N N N N N N -40.461 74.057 27.599 -2.016 1.586  1.538  H25   LMB 65 
LMB H26   H26   H 0 1 N N N N N N -40.185 70.252 26.824 -0.240 -0.535 -1.773 H26   LMB 66 
LMB H27   H27   H 0 1 N N N N N N -38.580 72.638 27.820 -0.400 -1.474 1.124  H27   LMB 67 
LMB H28   H28   H 0 1 N N N N N N -38.027 69.740 26.822 0.249  -3.537 -0.377 H28   LMB 68 
LMB H29   H29   H 0 1 N N N N N N -37.227 71.130 26.013 1.034  -2.381 -1.480 H29   LMB 69 
LMB H30   H30   H 0 1 N N N N N N -36.302 71.782 28.299 2.536  -1.676 0.406  H30   LMB 70 
LMB H31   H31   H 0 1 N N N N N N -36.218 69.986 30.008 1.223  -4.042 1.820  H31   LMB 71 
LMB H32   H32   H 0 1 N N N N N N -37.914 70.472 29.670 2.616  -3.113 2.426  H32   LMB 72 
LMB H33   H33   H 0 1 N N N N N N -37.260 68.949 28.976 1.026  -2.329 2.262  H33   LMB 73 
LMB H34   H34   H 0 1 N N N N N N -35.448 69.050 27.101 2.657  -4.683 -0.369 H34   LMB 74 
LMB H35   H35   H 0 1 N N N N N N -32.203 69.575 27.697 6.208  -4.122 -0.652 H35   LMB 75 
LMB H36   H36   H 0 1 N N N N N N -32.456 70.314 26.079 4.911  -5.341 -0.636 H36   LMB 76 
LMB H37   H37   H 0 1 N N N N N N -32.495 67.860 25.962 5.911  -5.134 -2.896 H37   LMB 77 
LMB H38   H38   H 0 1 N N N N N N -33.842 67.817 27.151 4.206  -4.621 -2.902 H38   LMB 78 
LMB H39   H39   H 0 1 N N N N N N -34.095 68.556 25.533 5.503  -3.401 -2.918 H39   LMB 79 
LMB H40   H40   H 0 1 N N N N N N -34.607 72.588 28.232 3.989  -1.187 0.030  H40   LMB 80 
LMB H41   H41   H 0 1 N N N N N N -31.708 71.836 27.666 6.535  -2.280 -1.244 H41   LMB 81 
LMB H42   H42   H 0 1 N N N N N N -33.305 74.346 28.576 5.497  0.472  -0.238 H42   LMB 82 
LMB H43   H43   H 0 1 N N N N N N -31.511 75.423 27.489 7.304  -0.061 -2.448 H43   LMB 83 
LMB H44   H44   H 0 1 N N N N N N -32.011 73.700 30.514 7.347  -0.510 1.150  H44   LMB 84 
LMB H45   H45   H 0 1 N N N N N N -29.547 73.507 30.445 8.447  -1.791 -0.667 H45   LMB 85 
LMB H46   H46   H 0 1 N N N N N N -30.348 72.259 29.431 8.910  -0.267 -1.461 H46   LMB 86 
LMB H47   H47   H 0 1 N N N N N N -29.588 73.692 28.659 9.598  -0.689 0.125  H47   LMB 87 
LMB H48   H48   H 0 1 N N N N N N -30.367 75.913 29.234 8.202  1.891  -0.526 H48   LMB 88 
LMB H49   H49   H 0 1 N N N N N N -30.892 75.729 30.942 7.057  1.965  0.835  H49   LMB 89 
LMB H50   H50   H 0 1 N N N N N N -32.680 76.331 28.535 8.801  1.064  2.350  H50   LMB 90 
LMB H51   H51   H 0 1 N N N N N N -33.263 76.051 30.211 9.946  0.990  0.989  H51   LMB 91 
LMB H52   H52   H 0 1 N N N N N N -33.034 79.410 30.527 10.652 4.222  2.572  H52   LMB 92 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LMB C30   C16   SING N N 1  
LMB C27   C26   SING N N 2  
LMB C26   C8    SING N N 3  
LMB C11   C12   SING N N 4  
LMB C11   C10   SING N N 5  
LMB C13   C12   DOUB N E 6  
LMB C13   C14   SING N N 7  
LMB C15   C16   SING N N 8  
LMB C15   C14   DOUB N E 9  
LMB O2    C5    SING N N 10 
LMB C8    C9    DOUB N Z 11 
LMB C8    C7    SING N N 12 
LMB C9    C10   SING N N 13 
LMB C16   C17   SING N N 14 
LMB C14   C29   SING N N 15 
LMB C7    C6    DOUB N E 16 
LMB C6    C5    SING N N 17 
LMB C10   C28   SING N N 18 
LMB C5    C4    SING N N 19 
LMB O3    C17   DOUB N N 20 
LMB C17   C18   SING N N 21 
LMB C25   C4    SING N N 22 
LMB C2    C3    SING N N 23 
LMB C2    C1    SING N N 24 
LMB O1    C1    DOUB N N 25 
LMB C4    C3    SING N N 26 
LMB C1    "O1'" SING N N 27 
LMB C31   C18   SING N N 28 
LMB C18   C19   SING N N 29 
LMB C33   C22   SING N N 30 
LMB C19   C20   SING N N 31 
LMB C19   O4    SING N N 32 
LMB C20   C32   SING N N 33 
LMB C20   C21   SING N N 34 
LMB O6    C24   DOUB N N 35 
LMB C22   C21   SING N N 36 
LMB C22   C23   DOUB N E 37 
LMB C24   C23   SING N N 38 
LMB C24   O5    SING N N 39 
LMB O5    H1    SING N N 40 
LMB C23   H2    SING N N 41 
LMB C33   H3    SING N N 42 
LMB C33   H4    SING N N 43 
LMB C33   H5    SING N N 44 
LMB C21   H6    SING N N 45 
LMB C21   H7    SING N N 46 
LMB C20   H8    SING N N 47 
LMB C32   H9    SING N N 48 
LMB C32   H10   SING N N 49 
LMB C32   H11   SING N N 50 
LMB C19   H12   SING N N 51 
LMB O4    H13   SING N N 52 
LMB C18   H14   SING N N 53 
LMB C31   H15   SING N N 54 
LMB C31   H16   SING N N 55 
LMB C31   H17   SING N N 56 
LMB C16   H18   SING N N 57 
LMB C30   H19   SING N N 58 
LMB C30   H20   SING N N 59 
LMB C30   H21   SING N N 60 
LMB C15   H22   SING N N 61 
LMB C29   H23   SING N N 62 
LMB C29   H24   SING N N 63 
LMB C29   H25   SING N N 64 
LMB C13   H26   SING N N 65 
LMB C12   H27   SING N N 66 
LMB C11   H28   SING N N 67 
LMB C11   H29   SING N N 68 
LMB C10   H30   SING N N 69 
LMB C28   H31   SING N N 70 
LMB C28   H32   SING N N 71 
LMB C28   H33   SING N N 72 
LMB C9    H34   SING N N 73 
LMB C26   H35   SING N N 74 
LMB C26   H36   SING N N 75 
LMB C27   H37   SING N N 76 
LMB C27   H38   SING N N 77 
LMB C27   H39   SING N N 78 
LMB C7    H40   SING N N 79 
LMB C6    H41   SING N N 80 
LMB C5    H42   SING N N 81 
LMB O2    H43   SING N N 82 
LMB C4    H44   SING N N 83 
LMB C25   H45   SING N N 84 
LMB C25   H46   SING N N 85 
LMB C25   H47   SING N N 86 
LMB C3    H48   SING N N 87 
LMB C3    H49   SING N N 88 
LMB C2    H50   SING N N 89 
LMB C2    H51   SING N N 90 
LMB "O1'" H52   SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LMB SMILES           ACDLabs              12.01 "O=C(O)CCC(C)C(O)/C=C/C(=C\C(C)C/C=C/C(=C/C(C(=O)C(C)C(O)C(C)CC(=C\C(=O)O)\C)C)C)CC"                                                                                                                                                                                                            
LMB InChI            InChI                1.03  "InChI=1S/C33H52O7/c1-9-28(14-15-29(34)24(5)13-16-30(35)36)19-22(3)12-10-11-21(2)17-25(6)32(39)27(8)33(40)26(7)18-23(4)20-31(37)38/h10-11,14-15,17,19-20,22,24-27,29,33-34,40H,9,12-13,16,18H2,1-8H3,(H,35,36)(H,37,38)/b11-10+,15-14+,21-17+,23-20+,28-19-/t22-,24+,25-,26+,27-,29+,33-/m1/s1" 
LMB InChIKey         InChI                1.03  GCBBLAVMGONVHO-XYERBDPFSA-N                                                                                                                                                                                                                                                                     
LMB SMILES_CANONICAL CACTVS               3.370 "CCC(/C=C/[C@H](O)[C@@H](C)CCC(O)=O)=C/[C@H](C)C/C=C/C(C)=C/[C@@H](C)C(=O)[C@@H](C)[C@H](O)[C@@H](C)CC(/C)=C/C(O)=O"                                                                                                                                                                            
LMB SMILES           CACTVS               3.370 "CCC(C=C[CH](O)[CH](C)CCC(O)=O)=C[CH](C)CC=CC(C)=C[CH](C)C(=O)[CH](C)[CH](O)[CH](C)CC(C)=CC(O)=O"                                                                                                                                                                                               
LMB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC/C(=C/[C@H](C)C/C=C/C(=C/[C@@H](C)C(=O)[C@@H](C)[C@@H]([C@@H](C)C/C(=C/C(=O)O)/C)O)/C)/C=C/[C@@H]([C@@H](C)CCC(=O)O)O"                                                                                                                                                                       
LMB SMILES           "OpenEye OEToolkits" 1.7.6 "CCC(=CC(C)CC=CC(=CC(C)C(=O)C(C)C(C(C)CC(=CC(=O)O)C)O)C)C=CC(C(C)CCC(=O)O)O"                                                                                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LMB "SYSTEMATIC NAME" ACDLabs              12.01 "(2E,5S,6R,7S,9R,10E,12E,15R,16Z,18E,20R,21S)-17-ethyl-6,20-dihydroxy-3,5,7,9,11,15,21-heptamethyl-8-oxotetracosa-2,10,12,16,18-pentaenedioic acid"                
LMB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2E,5S,6R,7S,9R,10E,12E,15R,16Z,18E,20R,21S)-17-ethyl-3,5,7,9,11,15,21-heptamethyl-6,20-bis(oxidanyl)-8-oxidanylidene-tetracosa-2,10,12,16,18-pentaenedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LMB "Create component" 2012-10-11 RCSB 
LMB "Initial release"  2013-01-04 RCSB 
LMB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LMB 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
