data_OOB
# 
_chem_comp.id                                    OOB 
_chem_comp.name                                  "5'-O-[(R)-(benzoyloxy)(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  "RNA OH 5 prime terminus" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C17 H18 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-05-04 
_chem_comp.pdbx_modified_date                    2015-09-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        451.327 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OOB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZJZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OOB C1  C   C 0 1 N N N 14.251 -1.036 26.351 -5.129 0.068  0.383  C1  OOB 1  
OOB O1  O3P O 0 1 N N N 14.350 -0.219 27.550 -3.845 -0.008 -0.017 O1  OOB 2  
OOB P1  P   P 0 1 N N N 14.641 -0.691 29.114 -2.915 -1.099 0.715  P1  OOB 3  
OOB O2  O1P O 0 1 N N N 15.021 0.525  29.735 -2.753 -0.710 2.269  O2  OOB 4  
OOB O3  O2P O 0 1 N N N 13.385 -1.532 29.415 -3.541 -2.435 0.604  O3  OOB 5  
OOB O4  O5* O 0 1 N N N 15.824 -1.750 29.060 -1.465 -1.125 0.015  O4  OOB 6  
OOB C2  C5* C 0 1 N N N 17.066 -1.432 28.405 -0.447 -2.062 0.369  C2  OOB 7  
OOB C3  C4* C 0 1 N N R 17.991 -2.624 28.446 0.798  -1.810 -0.485 C3  OOB 8  
OOB C4  C3* C 0 1 N N S 19.347 -2.395 27.761 1.882  -2.867 -0.180 C4  OOB 9  
OOB O5  O3* O 0 1 N N N 20.266 -1.709 28.663 1.861  -3.904 -1.163 O5  OOB 10 
OOB C5  C2* C 0 1 N N R 19.694 -3.884 27.558 3.208  -2.077 -0.256 C5  OOB 11 
OOB O6  O2* O 0 1 N N N 20.180 -4.595 28.737 4.046  -2.602 -1.287 O6  OOB 12 
OOB C6  C1* C 0 1 N N R 18.339 -4.496 27.201 2.767  -0.636 -0.597 C6  OOB 13 
OOB O7  O4* O 0 1 N N N 17.356 -3.768 27.843 1.401  -0.546 -0.134 O7  OOB 14 
OOB N1  N9  N 0 1 Y N N 18.058 -4.403 25.757 3.610  0.335  0.105  N1  OOB 15 
OOB C7  C4  C 0 1 Y N N 18.702 -5.183 24.906 4.824  0.812  -0.319 C7  OOB 16 
OOB C8  C5  C 0 1 Y N N 18.113 -4.882 23.611 5.252  1.714  0.671  C8  OOB 17 
OOB N2  N7  N 0 1 Y N N 17.122 -3.894 23.730 4.295  1.739  1.629  N2  OOB 18 
OOB C9  C8  C 0 1 Y N N 17.080 -3.671 25.083 3.328  0.935  1.296  C9  OOB 19 
OOB N3  N3  N 0 1 Y N N 19.733 -6.148 25.011 5.596  0.605  -1.381 N3  OOB 20 
OOB C10 C2  C 0 1 Y N N 20.175 -6.719 23.880 6.746  1.232  -1.508 C10 OOB 21 
OOB N4  N1  N 0 1 Y N N 19.675 -6.530 22.657 7.190  2.088  -0.605 N4  OOB 22 
OOB C11 C6  C 0 1 Y N N 18.692 -5.620 22.473 6.490  2.356  0.492  C11 OOB 23 
OOB N5  N6  N 0 1 N N N 18.126 -5.420 21.277 6.963  3.254  1.432  N5  OOB 24 
OOB O8  O1  O 0 1 N N N 14.371 -2.294 26.352 -5.537 -0.669 1.259  O8  OOB 25 
OOB C12 C1  C 0 1 Y N N 14.154 -0.269 25.058 -6.040 1.050  -0.240 C12 OOB 26 
OOB C13 C21 C 0 1 Y N N 14.339 -1.000 23.875 -5.576 1.894  -1.251 C13 OOB 27 
OOB C14 C3  C 0 1 Y N N 14.224 -0.286 22.665 -6.434 2.805  -1.832 C14 OOB 28 
OOB C15 C41 C 0 1 Y N N 13.822 1.067  22.647 -7.751 2.884  -1.415 C15 OOB 29 
OOB C16 C51 C 0 1 Y N N 13.614 1.785  23.872 -8.217 2.050  -0.414 C16 OOB 30 
OOB C17 C61 C 0 1 Y N N 13.774 1.084  25.075 -7.371 1.135  0.176  C17 OOB 31 
OOB H1  H1  H 0 1 N N N 14.373 0.764  30.388 -2.348 0.156  2.418  H1  OOB 32 
OOB H2  H2  H 0 1 N N N 17.542 -0.584 28.919 -0.194 -1.943 1.423  H2  OOB 33 
OOB H3  H3  H 0 1 N N N 16.867 -1.161 27.358 -0.808 -3.076 0.194  H3  OOB 34 
OOB H4  H4  H 0 1 N N N 18.193 -2.853 29.503 0.539  -1.826 -1.544 H4  OOB 35 
OOB H5  H5  H 0 1 N N N 19.230 -1.875 26.799 1.740  -3.284 0.817  H5  OOB 36 
OOB H6  H6  H 0 1 N N N 20.005 -0.800 28.750 2.523  -4.595 -1.020 H6  OOB 37 
OOB H7  H7  H 0 1 N N N 20.392 -3.994 26.715 3.723  -2.103 0.704  H7  OOB 38 
OOB H8  H8  H 0 1 N N N 21.025 -4.244 28.993 4.303  -3.524 -1.153 H8  OOB 39 
OOB H9  H9  H 0 1 N N N 18.325 -5.550 27.517 2.812  -0.471 -1.674 H9  OOB 40 
OOB H10 H10 H 0 1 N N N 16.376 -3.010 25.567 2.436  0.763  1.881  H10 OOB 41 
OOB H11 H11 H 0 1 N N N 21.013 -7.394 23.967 7.348  1.040  -2.383 H11 OOB 42 
OOB H12 H12 H 0 1 N N N 18.544 -6.030 20.604 7.816  3.696  1.295  H12 OOB 43 
OOB H13 H13 H 0 1 N N N 17.146 -5.610 21.336 6.443  3.442  2.229  H13 OOB 44 
OOB H14 H14 H 0 1 N N N 14.559 -2.057 23.891 -4.548 1.834  -1.577 H14 OOB 45 
OOB H15 H15 H 0 1 N N N 14.448 -0.784 21.733 -6.076 3.458  -2.615 H15 OOB 46 
OOB H16 H16 H 0 1 N N N 13.669 1.567  21.702 -8.418 3.599  -1.873 H16 OOB 47 
OOB H17 H17 H 0 1 N N N 13.343 2.830  23.867 -9.246 2.117  -0.093 H17 OOB 48 
OOB H18 H18 H 0 1 N N N 13.605 1.585  26.017 -7.737 0.482  0.954  H18 OOB 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OOB N5  C11 SING N N 1  
OOB C11 N4  DOUB Y N 2  
OOB C11 C8  SING Y N 3  
OOB C15 C14 DOUB Y N 4  
OOB C15 C16 SING Y N 5  
OOB N4  C10 SING Y N 6  
OOB C14 C13 SING Y N 7  
OOB C8  N2  SING Y N 8  
OOB C8  C7  DOUB Y N 9  
OOB N2  C9  DOUB Y N 10 
OOB C16 C17 DOUB Y N 11 
OOB C13 C12 DOUB Y N 12 
OOB C10 N3  DOUB Y N 13 
OOB C7  N3  SING Y N 14 
OOB C7  N1  SING Y N 15 
OOB C12 C17 SING Y N 16 
OOB C12 C1  SING N N 17 
OOB C9  N1  SING Y N 18 
OOB N1  C6  SING N N 19 
OOB C1  O8  DOUB N N 20 
OOB C1  O1  SING N N 21 
OOB C6  C5  SING N N 22 
OOB C6  O7  SING N N 23 
OOB O1  P1  SING N N 24 
OOB C5  C4  SING N N 25 
OOB C5  O6  SING N N 26 
OOB C4  C3  SING N N 27 
OOB C4  O5  SING N N 28 
OOB O7  C3  SING N N 29 
OOB C2  C3  SING N N 30 
OOB C2  O4  SING N N 31 
OOB O4  P1  SING N N 32 
OOB P1  O3  DOUB N N 33 
OOB P1  O2  SING N N 34 
OOB O2  H1  SING N N 35 
OOB C2  H2  SING N N 36 
OOB C2  H3  SING N N 37 
OOB C3  H4  SING N N 38 
OOB C4  H5  SING N N 39 
OOB O5  H6  SING N N 40 
OOB C5  H7  SING N N 41 
OOB O6  H8  SING N N 42 
OOB C6  H9  SING N N 43 
OOB C9  H10 SING N N 44 
OOB C10 H11 SING N N 45 
OOB N5  H12 SING N N 46 
OOB N5  H13 SING N N 47 
OOB C13 H14 SING N N 48 
OOB C14 H15 SING N N 49 
OOB C15 H16 SING N N 50 
OOB C16 H17 SING N N 51 
OOB C17 H18 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OOB SMILES           ACDLabs              12.01 "C(=O)(OP(=O)(O)OCC1C(O)C(O)C(O1)n3c2ncnc(c2nc3)N)c4ccccc4"                                                                                                                                          
OOB InChI            InChI                1.03  "InChI=1S/C17H18N5O8P/c18-14-11-15(20-7-19-14)22(8-21-11)16-13(24)12(23)10(29-16)6-28-31(26,27)30-17(25)9-4-2-1-3-5-9/h1-5,7-8,10,12-13,16,23-24H,6H2,(H,26,27)(H2,18,19,20)/t10-,12-,13-,16-/m1/s1" 
OOB InChIKey         InChI                1.03  PTJTVELTWZMHPG-XNIJJKJLSA-N                                                                                                                                                                          
OOB SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)c4ccccc4)[C@@H](O)[C@H]3O"                                                                                                                          
OOB SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)c4ccccc4)[CH](O)[CH]3O"                                                                                                                                
OOB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)C(=O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                          
OOB SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)C(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OOB "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-(benzoyloxy)(hydroxy)phosphoryl]adenosine"                                                      
OOB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] benzoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OOB "Create component" 2015-05-04 RCSB 
OOB "Initial release"  2015-09-30 RCSB 
# 
