data_RMB
#

_chem_comp.id                                   RMB
_chem_comp.name                                 "N1-(5'-PHOSPHO-ALPHA-RIBOSYL)-5-METHYLBENZIMIDAZOLE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H17 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "MONO-[3,4-DIHYDROXY-5-(5-METHYL-BENZOIMIDAZOL-1-YL)-TETRAHYDOR-FURAN-2-YLMETHYL] ESTER"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-07-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       344.257
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RMB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1JHO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RMB  N3      N3    N  0  1  Y  N  N  56.318  41.456  14.008  -1.090   1.802   2.831  N3      RMB   1  
RMB  N1      N1    N  0  1  Y  N  N  56.684  40.813  11.866  -0.140   0.140   1.784  N1      RMB   2  
RMB  C2      C2    C  0  1  Y  N  N  55.909  40.711  12.975  -0.660   1.392   1.673  C2      RMB   3  
RMB  C7A     C7A   C  0  1  Y  N  N  57.724  41.669  12.277  -0.263  -0.240   3.105  C7A     RMB   4  
RMB  C3A     C3A   C  0  1  Y  N  N  57.471  42.088  13.582  -0.875   0.839   3.764  C3A     RMB   5  
RMB  C4      C4    C  0  1  Y  N  N  58.297  43.013  14.218  -1.140   0.748   5.133  C4      RMB   6  
RMB  C5      C5    C  0  1  Y  N  N  59.406  43.501  13.540  -0.793  -0.380   5.820  C5      RMB   7  
RMB  C6      C6    C  0  1  Y  N  N  59.677  43.075  12.212  -0.189  -1.446   5.170  C6      RMB   8  
RMB  C7      C7    C  0  1  Y  N  N  58.847  42.155  11.582   0.077  -1.381   3.818  C7      RMB   9  
RMB  C8      C8    C  0  1  N  N  N  60.320  44.509  14.233  -1.076  -0.471   7.297  C8      RMB  10  
RMB  P       P     P  0  1  N  N  N  59.491  39.320   6.074  -0.943  -0.163  -4.799  P       RMB  11  
RMB  O1P     O1P   O  0  1  N  N  N  59.236  37.990   5.443  -0.932  -1.642  -4.848  O1P     RMB  12  
RMB  O2P     O2P   O  0  1  N  N  N  59.659  40.533   5.214  -2.364   0.380  -5.327  O2P     RMB  13  
RMB  O3P     O3P   O  0  1  N  N  N  60.508  39.192   7.152   0.233   0.413  -5.733  O3P     RMB  14  
RMB  "O5'"   O5*   O  0  1  N  N  N  58.178  39.561   6.977  -0.712   0.324  -3.282  "O5'"   RMB  15  
RMB  "C5'"   C5*   C  0  1  N  N  N  57.757  38.588   7.946   0.557  -0.186  -2.872  "C5'"   RMB  16  
RMB  "C4'"   C4*   C  0  1  N  N  R  58.176  39.043   9.331   0.839   0.243  -1.431  "C4'"   RMB  17  
RMB  "O4'"   O4*   O  0  1  N  N  N  57.584  40.343   9.656  -0.157  -0.291  -0.547  "O4'"   RMB  18  
RMB  "C3'"   C3*   C  0  1  N  N  S  57.729  38.128  10.445   2.180  -0.357  -0.941  "C3'"   RMB  19  
RMB  "O3'"   O3*   O  0  1  N  N  N  58.499  38.300  11.640   3.281   0.481  -1.295  "O3'"   RMB  20  
RMB  "C2'"   C2*   C  0  1  N  N  R  56.300  38.675  10.602   1.955  -0.370   0.596  "C2'"   RMB  21  
RMB  "O2'"   O2*   O  0  1  N  N  N  55.827  38.288  11.908   2.276   0.899   1.167  "O2'"   RMB  22  
RMB  "C1'"   C1*   C  0  1  N  N  S  56.482  40.187  10.532   0.442  -0.656   0.701  "C1'"   RMB  23  
RMB  H21     1H2   H  0  1  N  N  N  55.013  40.070  13.032  -0.708   1.963   0.758  H21     RMB  24  
RMB  H41     1H4   H  0  1  N  N  N  58.076  43.354  15.243  -1.615   1.570   5.648  H41     RMB  25  
RMB  H61     1H6   H  0  1  N  N  N  60.548  43.465  11.659   0.075  -2.333   5.726  H61     RMB  26  
RMB  H71     1H7   H  0  1  N  N  N  59.073  41.819  10.556   0.548  -2.213   3.317  H71     RMB  27  
RMB  H81     1H8   H  0  1  N  N  N  61.210  44.900  13.688  -0.220  -0.092   7.855  H81     RMB  28  
RMB  H82     2H8   H  0  1  N  N  N  59.703  45.371  14.578  -1.958   0.123   7.535  H82     RMB  29  
RMB  H83     3H8   H  0  1  N  N  N  60.656  44.077  15.204  -1.255  -1.511   7.569  H83     RMB  30  
RMB  HOP2    2HOP  H  0  0  N  N  N  59.821  41.378   5.615  -2.462   0.066  -6.236  HOP2    RMB  31  
RMB  HOP3    3HOP  H  0  0  N  N  N  60.670  40.037   7.553   0.190   1.377  -5.673  HOP3    RMB  32  
RMB  "H5'1"  1H5*  H  0  0  N  N  N  56.664  38.376   7.884   1.335   0.205  -3.528  "H5'1"  RMB  33  
RMB  "H5'2"  2H5*  H  0  0  N  N  N  58.130  37.565   7.706   0.546  -1.274  -2.931  "H5'2"  RMB  34  
RMB  "H4'"   H4*   H  0  1  N  N  N  59.289  39.064   9.277   0.864   1.331  -1.360  "H4'"   RMB  35  
RMB  "H3'"   H3*   H  0  1  N  N  N  57.825  37.035  10.244   2.321  -1.368  -1.325  "H3'"   RMB  36  
RMB  "HO3'"  *HO3  H  0  0  N  N  N  58.217  37.724  12.341   4.080   0.050  -0.962  "HO3'"  RMB  37  
RMB  "H2'"   H2*   H  0  1  N  N  N  55.575  38.305   9.839   2.536  -1.163   1.067  "H2'"   RMB  38  
RMB  "HO2'"  *HO2  H  0  0  N  N  N  54.944  38.625  12.005   3.213   1.057   0.988  "HO2'"  RMB  39  
RMB  "H1'"   H1*   H  0  1  N  N  N  55.572  40.714  10.160   0.278  -1.717   0.894  "H1'"   RMB  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RMB  N3     C2      DOUB  Y  N   1  
RMB  N3     C3A     SING  Y  N   2  
RMB  N1     C2      SING  Y  N   3  
RMB  N1     C7A     SING  Y  N   4  
RMB  N1     "C1'"   SING  N  N   5  
RMB  C2     H21     SING  N  N   6  
RMB  C7A    C3A     DOUB  Y  N   7  
RMB  C7A    C7      SING  Y  N   8  
RMB  C3A    C4      SING  Y  N   9  
RMB  C4     C5      DOUB  Y  N  10  
RMB  C4     H41     SING  N  N  11  
RMB  C5     C6      SING  Y  N  12  
RMB  C5     C8      SING  N  N  13  
RMB  C6     C7      DOUB  Y  N  14  
RMB  C6     H61     SING  N  N  15  
RMB  C7     H71     SING  N  N  16  
RMB  C8     H81     SING  N  N  17  
RMB  C8     H82     SING  N  N  18  
RMB  C8     H83     SING  N  N  19  
RMB  P      O1P     DOUB  N  N  20  
RMB  P      O2P     SING  N  N  21  
RMB  P      O3P     SING  N  N  22  
RMB  P      "O5'"   SING  N  N  23  
RMB  O2P    HOP2    SING  N  N  24  
RMB  O3P    HOP3    SING  N  N  25  
RMB  "O5'"  "C5'"   SING  N  N  26  
RMB  "C5'"  "C4'"   SING  N  N  27  
RMB  "C5'"  "H5'1"  SING  N  N  28  
RMB  "C5'"  "H5'2"  SING  N  N  29  
RMB  "C4'"  "O4'"   SING  N  N  30  
RMB  "C4'"  "C3'"   SING  N  N  31  
RMB  "C4'"  "H4'"   SING  N  N  32  
RMB  "O4'"  "C1'"   SING  N  N  33  
RMB  "C3'"  "O3'"   SING  N  N  34  
RMB  "C3'"  "C2'"   SING  N  N  35  
RMB  "C3'"  "H3'"   SING  N  N  36  
RMB  "O3'"  "HO3'"  SING  N  N  37  
RMB  "C2'"  "O2'"   SING  N  N  38  
RMB  "C2'"  "C1'"   SING  N  N  39  
RMB  "C2'"  "H2'"   SING  N  N  40  
RMB  "O2'"  "HO2'"  SING  N  N  41  
RMB  "C1'"  "H1'"   SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RMB  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC3OC(n2cnc1cc(ccc12)C)C(O)C3O"  
RMB  SMILES_CANONICAL  CACTVS                3.341  "Cc1ccc2n(cnc2c1)[C@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"  
RMB  SMILES            CACTVS                3.341  "Cc1ccc2n(cnc2c1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"  
RMB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1ccc2c(c1)ncn2[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
RMB  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1ccc2c(c1)ncn2C3C(C(C(O3)COP(=O)(O)O)O)O"  
RMB  InChI             InChI                 1.03   "InChI=1S/C13H17N2O7P/c1-7-2-3-9-8(4-7)14-6-15(9)13-12(17)11(16)10(22-13)5-21-23(18,19)20/h2-4,6,10-13,16-17H,5H2,1H3,(H2,18,19,20)/t10-,11-,12-,13+/m1/s1"  
RMB  InChIKey          InChI                 1.03   HGUDFQQPANTQEU-LPWJVIDDSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RMB  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-methyl-1-(5-O-phosphono-alpha-D-ribofuranosyl)-1H-benzimidazole"  
RMB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5S)-3,4-dihydroxy-5-(5-methylbenzimidazol-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RMB  "Create component"   2001-07-09  RCSB  
RMB  "Modify descriptor"  2011-06-04  RCSB  
RMB  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RMB
_pdbx_chem_comp_synonyms.name        "MONO-[3,4-DIHYDROXY-5-(5-METHYL-BENZOIMIDAZOL-1-YL)-TETRAHYDOR-FURAN-2-YLMETHYL] ESTER"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
