data_RUB
# 
_chem_comp.id                                    RUB 
_chem_comp.name                                  RIBULOSE-1,5-DIPHOSPHATE 
_chem_comp.type                                  SACCHARIDE 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C5 H12 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        310.090 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RUB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1RXO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RUB C1   C1   C 0 1 N N N -4.438 75.268 30.130 -0.281 -0.292 -2.334 C1   RUB 1  
RUB C2   C2   C 0 1 N N N -4.658 74.417 31.386 -1.300 0.120  -1.303 C2   RUB 2  
RUB C3   C3   C 0 1 N N R -3.424 74.311 32.371 -1.249 -0.465 0.083  C3   RUB 3  
RUB C4   C4   C 0 1 N N R -3.079 75.610 33.099 -0.369 0.412  0.975  C4   RUB 4  
RUB C5   C5   C 0 1 N N N -1.932 75.441 34.114 -0.317 -0.182 2.384  C5   RUB 5  
RUB O1   O1   O 0 1 N N N -5.418 75.236 29.057 -0.538 0.395  -3.560 O1   RUB 6  
RUB O2   O2   O 0 1 N N N -5.729 73.806 31.581 -2.158 0.920  -1.590 O2   RUB 7  
RUB O3   O3   O 0 1 N N N -3.689 73.354 33.333 -2.570 -0.522 0.625  O3   RUB 8  
RUB O4   O4   O 0 1 N N N -2.710 76.584 32.180 0.951  0.469  0.433  O4   RUB 9  
RUB O5   O5   O 0 1 N N N -1.755 76.439 35.134 0.504  0.637  3.217  O5   RUB 10 
RUB P1   P1   P 0 1 N N N -5.232 76.163 27.760 0.582  -0.090 -4.609 P1   RUB 11 
RUB P2   P2   P 0 1 N N N -0.285 76.805 35.756 0.514  -0.043 4.676  P2   RUB 12 
RUB O1P  O1P  O 0 1 N N N -6.435 76.060 26.935 0.480  -1.555 -4.797 O1P  RUB 13 
RUB O2P  O2P  O 0 1 N N N -4.035 75.419 26.993 0.351  0.648  -6.021 O2P  RUB 14 
RUB O3P  O3P  O 0 1 N N N -4.755 77.476 28.183 2.043  0.277  -4.043 O3P  RUB 15 
RUB O4P  O4P  O 0 1 N N N -0.421 78.108 36.508 1.067  -1.413 4.577  O4P  RUB 16 
RUB O5P  O5P  O 0 1 N N N 0.598  77.050 34.462 1.427  0.833  5.671  O5P  RUB 17 
RUB O6P  O6P  O 0 1 N N N 0.255  75.598 36.441 -0.989 -0.112 5.247  O6P  RUB 18 
RUB H11  1H1  H 0 1 N N N -4.288 76.328 30.441 0.717  -0.039 -1.978 H11  RUB 19 
RUB H12  2H1  H 0 1 N N N -3.438 75.019 29.704 -0.346 -1.367 -2.499 H12  RUB 20 
RUB H3   H3   H 0 1 N N N -2.551 74.048 31.728 -0.831 -1.471 0.038  H3   RUB 21 
RUB H4   H4   H 0 1 N N N -3.995 75.911 33.658 -0.786 1.418  1.021  H4   RUB 22 
RUB H51  1H5  H 0 1 N N N -2.026 74.442 34.600 -1.324 -0.226 2.798  H51  RUB 23 
RUB H52  2H5  H 0 1 N N N -0.973 75.321 33.557 0.100  -1.188 2.339  H52  RUB 24 
RUB HO3  HO3  H 0 1 N N N -2.948 73.290 33.924 -2.902 0.385  0.648  HO3  RUB 25 
RUB HO4  HO4  H 0 1 N N N -2.495 77.391 32.632 1.284  -0.438 0.410  HO4  RUB 26 
RUB HOP2 2HOP H 0 0 N N N -3.924 75.967 26.225 1.041  0.329  -6.619 HOP2 RUB 27 
RUB HOP3 3HOP H 0 0 N N N -4.644 78.024 27.415 2.067  1.238  -3.936 HOP3 RUB 28 
RUB HOP5 5HOP H 0 0 N N N 1.450  77.262 34.822 1.406  0.391  6.532  HOP5 RUB 29 
RUB HOP6 6HOP H 0 0 N N N 1.107  75.810 36.801 -1.311 0.798  5.295  HOP6 RUB 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RUB C1  C2   SING N N 1  
RUB C1  O1   SING N N 2  
RUB C1  H11  SING N N 3  
RUB C1  H12  SING N N 4  
RUB C2  C3   SING N N 5  
RUB C2  O2   DOUB N N 6  
RUB C3  C4   SING N N 7  
RUB C3  O3   SING N N 8  
RUB C3  H3   SING N N 9  
RUB C4  C5   SING N N 10 
RUB C4  O4   SING N N 11 
RUB C4  H4   SING N N 12 
RUB C5  O5   SING N N 13 
RUB C5  H51  SING N N 14 
RUB C5  H52  SING N N 15 
RUB O1  P1   SING N N 16 
RUB O3  HO3  SING N N 17 
RUB O4  HO4  SING N N 18 
RUB O5  P2   SING N N 19 
RUB P1  O1P  DOUB N N 20 
RUB P1  O2P  SING N N 21 
RUB P1  O3P  SING N N 22 
RUB P2  O4P  DOUB N N 23 
RUB P2  O5P  SING N N 24 
RUB P2  O6P  SING N N 25 
RUB O2P HOP2 SING N N 26 
RUB O3P HOP3 SING N N 27 
RUB O5P HOP5 SING N N 28 
RUB O6P HOP6 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RUB SMILES           ACDLabs              10.04 "O=P(O)(O)OCC(O)C(O)C(=O)COP(=O)(O)O"                                                                                      
RUB SMILES_CANONICAL CACTVS               3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)C(=O)CO[P](O)(O)=O"                                                                         
RUB SMILES           CACTVS               3.341 "O[CH](CO[P](O)(O)=O)[CH](O)C(=O)CO[P](O)(O)=O"                                                                            
RUB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H](C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O"                                                                            
RUB SMILES           "OpenEye OEToolkits" 1.5.0 "C(C(C(C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O"                                                                                    
RUB InChI            InChI                1.03  "InChI=1S/C5H12O11P2/c6-3(1-15-17(9,10)11)5(8)4(7)2-16-18(12,13)14/h3,5-6,8H,1-2H2,(H2,9,10,11)(H2,12,13,14)/t3-,5-/m1/s1" 
RUB InChIKey         InChI                1.03  YAHZABJORDUQGO-NQXXGFSBSA-N                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RUB "SYSTEMATIC NAME" ACDLabs              10.04 1,5-di-O-phosphono-D-ribulose                                              
RUB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3R,4R)-3,4-dihydroxy-2-oxo-5-phosphonooxy-pentyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RUB "Create component"  1999-07-08 EBI  
RUB "Modify descriptor" 2011-06-04 RCSB 
# 
