data_RYB
# 
_chem_comp.id                                    RYB 
_chem_comp.name                                  "1-{[(3'S)-6-chloro-1'-{6-[2-(dimethylamino)ethoxy]isoquinolin-4-yl}-2'-oxo-1H-spiro[isoquinoline-4,3'-pyrrolidine]-2(3H)-sulfonyl]methyl}cyclopropane-1-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H32 Cl N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-22 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        594.124 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RYB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GNH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RYB N1  N1  N  0 1 Y N N N N N -16.965 3.566  26.418 0.761  4.976  -1.094 N1  RYB 1  
RYB N3  N2  N  0 1 N N N N N N -21.668 6.724  30.887 -3.070 -1.150 -0.489 N3  RYB 2  
RYB C4  C1  C  0 1 Y N N N N N -18.540 8.354  26.145 3.682  1.491  0.859  C4  RYB 3  
RYB C5  C2  C  0 1 Y N N N N N -17.263 8.325  25.587 4.197  2.721  1.277  C5  RYB 4  
RYB C6  C3  C  0 1 Y N N N N N -16.575 7.150  25.506 3.610  3.891  0.904  C6  RYB 5  
RYB C7  C4  C  0 1 Y N N N N N -17.143 5.943  25.981 2.469  3.864  0.086  C7  RYB 6  
RYB C8  C5  C  0 1 Y N N N N N -16.461 4.701  25.953 1.825  5.040  -0.329 C8  RYB 7  
RYB C10 C6  C  0 1 Y N N N N N -18.983 4.751  27.067 0.797  2.617  -1.161 C10 RYB 8  
RYB C13 C7  C  0 1 N N S N N N -21.842 4.705  29.490 -1.094 -0.503 -1.733 C13 RYB 9  
RYB C15 C8  C  0 1 N N N N N N -22.161 6.091  32.117 -2.609 -2.480 -0.078 C15 RYB 10 
RYB C17 C9  C  0 1 Y N N N N N -22.116 3.830  33.198 -0.472 -3.717 0.172  C17 RYB 11 
RYB C20 C10 C  0 1 Y N N N N N -22.021 2.518  30.757 0.907  -1.913 -1.383 C20 RYB 12 
RYB C21 C11 C  0 1 Y N N N N N -22.026 3.913  30.789 -0.446 -1.714 -1.140 C21 RYB 13 
RYB C22 C12 C  0 1 N N N N N N -19.093 7.599  30.757 -5.733 -0.847 0.101  C22 RYB 14 
RYB C24 C13 C  0 1 N N N N N N -17.115 8.847  29.527 -8.208 -0.594 0.910  C24 RYB 15 
RYB C26 C14 C  0 1 N N N N N N -17.415 8.848  32.081 -6.431 1.168  1.480  C26 RYB 16 
RYB C28 C15 C  0 1 Y N N N N N -18.449 5.972  26.553 1.946  2.615  -0.339 C28 RYB 17 
RYB O3  O1  O  0 1 N N N N N N -19.429 4.735  29.934 -1.196 1.056  0.113  O3  RYB 18 
RYB C27 C16 C  0 1 N N N N N N -20.349 4.719  29.141 -0.714 0.731  -0.952 C27 RYB 19 
RYB C19 C17 C  0 1 Y N N N N N -22.024 1.812  31.945 1.565  -3.004 -0.854 C19 RYB 20 
RYB CL  CL1 CL 0 0 N N N N N N -21.975 0.070  31.892 3.256  -3.239 -1.168 CL  RYB 21 
RYB C18 C18 C  0 1 Y N N N N N -22.062 2.449  33.165 0.872  -3.910 -0.070 C18 RYB 22 
RYB C16 C19 C  0 1 Y N N N N N -22.096 4.580  32.023 -1.136 -2.623 -0.366 C16 RYB 23 
RYB S   S1  S  0 1 N N N N N N -20.794 8.098  30.933 -4.064 -0.246 0.480  S   RYB 24 
RYB O2  O2  O  0 1 N N N N N N -20.969 8.667  32.232 -3.691 -0.610 1.801  O2  RYB 25 
RYB C23 C20 C  0 1 N N N N N N -17.989 8.648  30.746 -6.735 -0.211 1.068  C23 RYB 26 
RYB N4  N3  N  0 1 N N N N N N -16.980 8.955  33.127 -6.197 2.233  1.799  N4  RYB 27 
RYB C25 C21 C  0 1 N N N N N N -18.122 9.877  29.873 -7.402 -1.127 2.096  C25 RYB 28 
RYB O1  O3  O  0 1 N N N N N N -21.153 8.866  29.782 -3.895 1.085  0.011  O1  RYB 29 
RYB C14 C22 C  0 1 N N N N N N -22.286 6.180  29.666 -2.610 -0.647 -1.795 C14 RYB 30 
RYB C12 C23 C  0 1 N N N N N N -22.454 4.054  28.228 -0.533 -0.255 -3.148 C12 RYB 31 
RYB C11 C24 C  0 1 N N N N N N -21.514 4.472  27.101 0.610  0.746  -2.861 C11 RYB 32 
RYB N2  N4  N  0 1 N N N N N N -20.225 4.669  27.784 0.237  1.418  -1.610 N2  RYB 33 
RYB C9  C25 C  0 1 Y N N N N N -18.195 3.610  26.951 0.242  3.829  -1.511 C9  RYB 34 
RYB C29 C26 C  0 1 Y N N N N N -19.132 7.209  26.620 2.572  1.429  0.062  C29 RYB 35 
RYB O   O4  O  0 1 N N N N N N -19.133 9.595  26.181 4.292  0.341  1.249  O   RYB 36 
RYB C3  C27 C  0 1 N N N N N N -20.339 9.767  26.954 5.447  0.469  2.080  C3  RYB 37 
RYB C2  C28 C  0 1 N N N N N N -21.035 11.032 26.503 5.992  -0.921 2.414  C2  RYB 38 
RYB N   N5  N  0 1 N N N N N N -20.865 12.159 27.426 6.469  -1.568 1.185  N   RYB 39 
RYB C1  C29 C  0 1 N N N N N N -22.159 12.600 27.939 7.631  -0.860 0.633  C1  RYB 40 
RYB C   C30 C  0 1 N N N N N N -20.179 13.273 26.776 6.778  -2.984 1.421  C   RYB 41 
RYB H1  H1  H  0 1 N N N N N N -16.817 9.236  25.217 5.075  2.744  1.906  H1  RYB 42 
RYB H2  H2  H  0 1 N N N N N N -15.585 7.140  25.074 4.019  4.834  1.235  H2  RYB 43 
RYB H3  H3  H  0 1 N N N N N N -15.469 4.677  25.526 2.207  6.001  -0.017 H3  RYB 44 
RYB H4  H4  H  0 1 N N N N N N -21.543 6.424  32.964 -2.783 -2.609 0.991  H4  RYB 45 
RYB H5  H5  H  0 1 N N N N N N -23.205 6.395  32.283 -3.160 -3.241 -0.629 H5  RYB 46 
RYB H6  H6  H  0 1 N N N N N N -22.175 4.336  34.150 -1.013 -4.424 0.784  H6  RYB 47 
RYB H7  H7  H  0 1 N N N N N N -22.015 1.995  29.812 1.451  -1.204 -1.990 H7  RYB 48 
RYB H8  H8  H  0 1 N N N N N N -19.020 7.051  29.806 -5.994 -0.576 -0.922 H8  RYB 49 
RYB H9  H9  H  0 1 N N N N N N -18.874 6.917  31.592 -5.762 -1.931 0.208  H9  RYB 50 
RYB H10 H10 H  0 1 N N N N N N -17.261 8.215  28.639 -8.952 0.176  1.113  H10 RYB 51 
RYB H11 H11 H  0 1 N N N N N N -16.044 9.065  29.650 -8.464 -1.298 0.119  H11 RYB 52 
RYB H12 H12 H  0 1 N N N N N N -22.050 1.879  34.082 1.382  -4.764 0.351  H12 RYB 53 
RYB H13 H13 H  0 1 N N N N N N -17.796 10.857 30.252 -7.615 -0.707 3.079  H13 RYB 54 
RYB H14 H14 H  0 1 N N N N N N -19.013 10.007 29.241 -7.127 -2.181 2.085  H14 RYB 55 
RYB H15 H15 H  0 1 N N N N N N -21.963 6.769  28.795 -2.882 -1.352 -2.580 H15 RYB 56 
RYB H16 H16 H  0 1 N N N N N N -23.381 6.227  29.754 -3.065 0.324  -1.996 H16 RYB 57 
RYB H17 H17 H  0 1 N N N N N N -23.471 4.431  28.048 -0.144 -1.176 -3.582 H17 RYB 58 
RYB H18 H18 H  0 1 N N N N N N -22.481 2.959  28.328 -1.288 0.190  -3.795 H18 RYB 59 
RYB H19 H19 H  0 1 N N N N N N -21.856 5.405  26.630 1.554  0.216  -2.737 H19 RYB 60 
RYB H20 H20 H  0 1 N N N N N N -21.438 3.682  26.339 0.688  1.472  -3.670 H20 RYB 61 
RYB H21 H21 H  0 1 N N N N N N -18.608 2.683  27.321 -0.636 3.846  -2.139 H21 RYB 62 
RYB H22 H22 H  0 1 N N N N N N -20.123 7.253  27.046 2.182  0.473  -0.256 H22 RYB 63 
RYB H23 H23 H  0 1 N N N N N N -21.004 8.904  26.798 6.211  1.043  1.556  H23 RYB 64 
RYB H24 H24 H  0 1 N N N N N N -20.085 9.846  28.021 5.175  0.984  3.002  H24 RYB 65 
RYB H25 H25 H  0 1 N N N N N N -20.629 11.321 25.523 6.818  -0.828 3.119  H25 RYB 66 
RYB H26 H26 H  0 1 N N N N N N -22.110 10.821 26.406 5.201  -1.524 2.859  H26 RYB 67 
RYB H28 H28 H  0 1 N N N N N N -22.012 13.444 28.628 8.439  -0.863 1.366  H28 RYB 68 
RYB H29 H29 H  0 1 N N N N N N -22.797 12.918 27.101 7.964  -1.360 -0.276 H29 RYB 69 
RYB H30 H30 H  0 1 N N N N N N -22.643 11.770 28.474 7.354  0.169  0.402  H30 RYB 70 
RYB H31 H31 H  0 1 N N N N N N -20.066 14.102 27.490 5.881  -3.500 1.763  H31 RYB 71 
RYB H32 H32 H  0 1 N N N N N N -19.186 12.944 26.436 7.129  -3.439 0.495  H32 RYB 72 
RYB H33 H33 H  0 1 N N N N N N -20.769 13.612 25.912 7.555  -3.064 2.182  H33 RYB 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RYB C6  C5  DOUB Y N 1  
RYB C6  C7  SING Y N 2  
RYB C5  C4  SING Y N 3  
RYB C8  C7  DOUB Y N 4  
RYB C8  N1  SING Y N 5  
RYB C7  C28 SING Y N 6  
RYB C4  O   SING N N 7  
RYB C4  C29 DOUB Y N 8  
RYB O   C3  SING N N 9  
RYB N1  C9  DOUB Y N 10 
RYB C2  C3  SING N N 11 
RYB C2  N   SING N N 12 
RYB C28 C29 SING Y N 13 
RYB C28 C10 DOUB Y N 14 
RYB C   N   SING N N 15 
RYB C9  C10 SING Y N 16 
RYB C10 N2  SING N N 17 
RYB C11 N2  SING N N 18 
RYB C11 C12 SING N N 19 
RYB N   C1  SING N N 20 
RYB N2  C27 SING N N 21 
RYB C12 C13 SING N N 22 
RYB C27 C13 SING N N 23 
RYB C27 O3  DOUB N N 24 
RYB C13 C14 SING N N 25 
RYB C13 C21 SING N N 26 
RYB C24 C25 SING N N 27 
RYB C24 C23 SING N N 28 
RYB C14 N3  SING N N 29 
RYB O1  S   DOUB N N 30 
RYB C25 C23 SING N N 31 
RYB C23 C22 SING N N 32 
RYB C23 C26 SING N N 33 
RYB C22 S   SING N N 34 
RYB C20 C21 DOUB Y N 35 
RYB C20 C19 SING Y N 36 
RYB C21 C16 SING Y N 37 
RYB N3  S   SING N N 38 
RYB N3  C15 SING N N 39 
RYB S   O2  DOUB N N 40 
RYB CL  C19 SING N N 41 
RYB C19 C18 DOUB Y N 42 
RYB C16 C15 SING N N 43 
RYB C16 C17 DOUB Y N 44 
RYB C26 N4  TRIP N N 45 
RYB C18 C17 SING Y N 46 
RYB C5  H1  SING N N 47 
RYB C6  H2  SING N N 48 
RYB C8  H3  SING N N 49 
RYB C15 H4  SING N N 50 
RYB C15 H5  SING N N 51 
RYB C17 H6  SING N N 52 
RYB C20 H7  SING N N 53 
RYB C22 H8  SING N N 54 
RYB C22 H9  SING N N 55 
RYB C24 H10 SING N N 56 
RYB C24 H11 SING N N 57 
RYB C18 H12 SING N N 58 
RYB C25 H13 SING N N 59 
RYB C25 H14 SING N N 60 
RYB C14 H15 SING N N 61 
RYB C14 H16 SING N N 62 
RYB C12 H17 SING N N 63 
RYB C12 H18 SING N N 64 
RYB C11 H19 SING N N 65 
RYB C11 H20 SING N N 66 
RYB C9  H21 SING N N 67 
RYB C29 H22 SING N N 68 
RYB C3  H23 SING N N 69 
RYB C3  H24 SING N N 70 
RYB C2  H25 SING N N 71 
RYB C2  H26 SING N N 72 
RYB C1  H28 SING N N 73 
RYB C1  H29 SING N N 74 
RYB C1  H30 SING N N 75 
RYB C   H31 SING N N 76 
RYB C   H32 SING N N 77 
RYB C   H33 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RYB SMILES           ACDLabs              12.01 "CN(C)CCOc1cc2c(cc1)cncc2N1CCC2(CN(Cc3ccc(Cl)cc32)S(=O)(=O)CC2(C#N)CC2)C1=O"                                                                                                                               
RYB InChI            InChI                1.06  "InChI=1S/C30H32ClN5O4S/c1-34(2)11-12-40-24-6-4-21-15-33-16-27(25(21)14-24)36-10-9-30(28(36)37)19-35(17-22-3-5-23(31)13-26(22)30)41(38,39)20-29(18-32)7-8-29/h3-6,13-16H,7-12,17,19-20H2,1-2H3/t30-/m1/s1" 
RYB InChIKey         InChI                1.06  FLBSSPVVUCLCOS-SSEXGKCCSA-N                                                                                                                                                                                
RYB SMILES_CANONICAL CACTVS               3.385 "CN(C)CCOc1ccc2cncc(N3CC[C@]4(CN(Cc5ccc(Cl)cc45)[S](=O)(=O)CC6(CC6)C#N)C3=O)c2c1"                                                                                                                          
RYB SMILES           CACTVS               3.385 "CN(C)CCOc1ccc2cncc(N3CC[C]4(CN(Cc5ccc(Cl)cc45)[S](=O)(=O)CC6(CC6)C#N)C3=O)c2c1"                                                                                                                           
RYB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCOc1ccc2cncc(c2c1)N3CC[C@@]4(C3=O)CN(Cc5c4cc(cc5)Cl)S(=O)(=O)CC6(CC6)C#N"                                                                                                                           
RYB SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)CCOc1ccc2cncc(c2c1)N3CCC4(C3=O)CN(Cc5c4cc(cc5)Cl)S(=O)(=O)CC6(CC6)C#N"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RYB "SYSTEMATIC NAME" ACDLabs              12.01 "1-{[(3'S)-6-chloro-1'-{6-[2-(dimethylamino)ethoxy]isoquinolin-4-yl}-2'-oxo-1H-spiro[isoquinoline-4,3'-pyrrolidine]-2(3H)-sulfonyl]methyl}cyclopropane-1-carbonitrile"                      
RYB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[[(4~{S})-6-chloranyl-1'-[6-[2-(dimethylamino)ethoxy]isoquinolin-4-yl]-2'-oxidanylidene-spiro[1,3-dihydroisoquinoline-4,3'-pyrrolidine]-2-yl]sulfonylmethyl]cyclopropane-1-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RYB "Create component" 2023-08-22 RCSB 
RYB "Initial release"  2023-11-08 RCSB 
# 
