data_SVB
# 
_chem_comp.id                                    SVB 
_chem_comp.name                                  "N-(4-methylpiperazin-1-yl)-2-[(5Z)-4-oxo-2-thioxo-5-(2,3,6-trichlorobenzylidene)-1,3-thiazolidin-3-yl]acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H17 Cl3 N4 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-09 
_chem_comp.pdbx_modified_date                    2014-11-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        479.831 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SVB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4PVO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SVB CL1 CL1 CL 0 0 N N N -25.370 -1.486 64.465 -4.866 -3.022 0.729  CL1 SVB 1  
SVB C1  C1  C  0 1 Y N N -25.766 -1.581 62.780 -4.905 -1.287 0.665  C1  SVB 2  
SVB C2  C2  C  0 1 Y N N -25.721 -2.773 62.151 -3.710 -0.557 0.689  C2  SVB 3  
SVB C3  C3  C  0 1 N N N -25.273 -4.007 62.889 -2.419 -1.255 0.768  C3  SVB 4  
SVB C4  C4  C  0 1 N N N -26.305 -5.045 63.268 -1.426 -0.945 -0.102 C4  SVB 5  
SVB S5  S5  S  0 1 N N N -27.796 -5.383 62.798 -1.452 0.262  -1.404 S5  SVB 6  
SVB C6  C6  C  0 1 N N N -28.150 -6.682 63.689 0.207  -0.067 -1.934 C6  SVB 7  
SVB N7  N7  N  0 1 N N N -27.063 -7.069 64.555 0.686  -1.031 -1.139 N7  SVB 8  
SVB C8  C8  C  0 1 N N N -27.045 -8.166 65.474 2.050  -1.531 -1.326 C8  SVB 9  
SVB C9  C9  C  0 1 N N N -25.895 -6.029 64.283 -0.080 -1.526 -0.181 C9  SVB 10 
SVB O10 O10 O  0 1 N N N -24.679 -6.093 64.940 0.302  -2.399 0.576  O10 SVB 11 
SVB S11 S11 S  0 1 N N N -29.579 -7.663 63.778 1.038  0.701  -3.218 S11 SVB 12 
SVB C12 C12 C  0 1 Y N N -26.043 -2.876 60.687 -3.752 0.842  0.637  C12 SVB 13 
SVB CL2 CL2 CL 0 0 N N N -25.953 -4.454 59.918 -2.279 1.760  0.665  CL2 SVB 14 
SVB C13 C13 C  0 1 Y N N -26.410 -1.737 60.052 -4.970 1.489  0.561  C13 SVB 15 
SVB CL3 CL3 CL 0 0 N N N -26.827 -1.705 58.375 -5.027 3.223  0.495  CL3 SVB 16 
SVB C14 C14 C  0 1 Y N N -26.485 -0.403 60.761 -6.146 0.758  0.538  C14 SVB 17 
SVB C15 C15 C  0 1 Y N N -26.180 -0.323 62.058 -6.113 -0.624 0.584  C15 SVB 18 
SVB H1  H1  H  0 1 N N N -24.233 -4.148 63.143 -2.261 -2.014 1.520  H1  SVB 19 
SVB H3  H3  H  0 1 N N N -26.407 -8.162 66.370 2.099  -2.576 -1.020 H3  SVB 20 
SVB H4  H4  H  0 1 N N N -27.937 -8.782 65.661 2.328  -1.446 -2.376 H4  SVB 21 
SVB H6  H6  H  0 1 N N N -26.784 0.482  60.219 -7.095 1.270  0.479  H6  SVB 22 
SVB H7  H7  H  0 1 N N N -26.229 0.622  62.579 -7.035 -1.186 0.565  H7  SVB 23 
SVB C5  C5  C  0 1 N N N ?       ?      ?      3.002  -0.717 -0.487 C5  SVB 24 
SVB N1  N1  N  0 1 N N N ?       ?      ?      4.320  -0.999 -0.499 N1  SVB 25 
SVB H8  H8  H  0 1 N N N ?       ?      ?      4.647  -1.769 -0.989 H8  SVB 26 
SVB N2  N2  N  0 1 N N N ?       ?      ?      5.195  -0.199 0.180  N2  SVB 27 
SVB C11 C11 C  0 1 N N N ?       ?      ?      6.252  0.300  -0.711 C11 SVB 28 
SVB C7  C7  C  0 1 N N N ?       ?      ?      7.163  1.252  0.066  C7  SVB 29 
SVB N3  N3  N  0 1 N N N ?       ?      ?      7.740  0.544  1.218  N3  SVB 30 
SVB C17 C17 C  0 1 N N N ?       ?      ?      6.683  0.045  2.109  C17 SVB 31 
SVB C18 C18 C  0 1 N N N ?       ?      ?      5.772  -0.907 1.331  C18 SVB 32 
SVB C10 C10 C  0 1 N N N ?       ?      ?      8.681  1.404  1.948  C10 SVB 33 
SVB O1  O1  O  0 1 N N N ?       ?      ?      2.582  0.191  0.199  O1  SVB 34 
SVB H2  H2  H  0 1 N N N ?       ?      ?      6.838  -0.540 -1.085 H2  SVB 35 
SVB H5  H5  H  0 1 N N N ?       ?      ?      5.801  0.831  -1.549 H5  SVB 36 
SVB H9  H9  H  0 1 N N N ?       ?      ?      7.965  1.601  -0.585 H9  SVB 37 
SVB H10 H10 H  0 1 N N N ?       ?      ?      6.583  2.105  0.418  H10 SVB 38 
SVB H11 H11 H  0 1 N N N ?       ?      ?      7.134  -0.486 2.947  H11 SVB 39 
SVB H12 H12 H  0 1 N N N ?       ?      ?      6.097  0.885  2.483  H12 SVB 40 
SVB H13 H13 H  0 1 N N N ?       ?      ?      4.970  -1.256 1.982  H13 SVB 41 
SVB H14 H14 H  0 1 N N N ?       ?      ?      6.352  -1.760 0.980  H14 SVB 42 
SVB H15 H15 H  0 1 N N N ?       ?      ?      8.159  2.290  2.308  H15 SVB 43 
SVB H16 H16 H  0 1 N N N ?       ?      ?      9.093  0.855  2.795  H16 SVB 44 
SVB H17 H17 H  0 1 N N N ?       ?      ?      9.490  1.705  1.282  H17 SVB 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SVB CL3 C13 SING N N 1  
SVB CL2 C12 SING N N 2  
SVB C13 C12 DOUB Y N 3  
SVB C13 C14 SING Y N 4  
SVB C12 C2  SING Y N 5  
SVB C14 C15 DOUB Y N 6  
SVB C15 C1  SING Y N 7  
SVB C2  C1  DOUB Y N 8  
SVB C2  C3  SING N N 9  
SVB C1  CL1 SING N N 10 
SVB S5  C4  SING N N 11 
SVB S5  C6  SING N N 12 
SVB C3  C4  DOUB N Z 13 
SVB C4  C9  SING N N 14 
SVB C6  S11 DOUB N N 15 
SVB C6  N7  SING N N 16 
SVB C9  N7  SING N N 17 
SVB C9  O10 DOUB N N 18 
SVB N7  C8  SING N N 19 
SVB C3  H1  SING N N 20 
SVB C8  H3  SING N N 21 
SVB C8  H4  SING N N 22 
SVB C14 H6  SING N N 23 
SVB C15 H7  SING N N 24 
SVB C8  C5  SING N N 25 
SVB C5  N1  SING N N 26 
SVB N1  H8  SING N N 27 
SVB N1  N2  SING N N 28 
SVB N2  C11 SING N N 29 
SVB C11 C7  SING N N 30 
SVB C7  N3  SING N N 31 
SVB N3  C17 SING N N 32 
SVB C17 C18 SING N N 33 
SVB C18 N2  SING N N 34 
SVB N3  C10 SING N N 35 
SVB C5  O1  DOUB N N 36 
SVB C11 H2  SING N N 37 
SVB C11 H5  SING N N 38 
SVB C7  H9  SING N N 39 
SVB C7  H10 SING N N 40 
SVB C17 H11 SING N N 41 
SVB C17 H12 SING N N 42 
SVB C18 H13 SING N N 43 
SVB C18 H14 SING N N 44 
SVB C10 H15 SING N N 45 
SVB C10 H16 SING N N 46 
SVB C10 H17 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SVB SMILES           ACDLabs              12.01 "O=C(NN1CCN(C)CC1)CN2C(=O)C(\SC2=S)=C\c3c(Cl)ccc(Cl)c3Cl"                                                                                            
SVB InChI            InChI                1.03  "InChI=1S/C17H17Cl3N4O2S2/c1-22-4-6-23(7-5-22)21-14(25)9-24-16(26)13(28-17(24)27)8-10-11(18)2-3-12(19)15(10)20/h2-3,8H,4-7,9H2,1H3,(H,21,25)/b13-8-" 
SVB InChIKey         InChI                1.03  GTHJLNHVDYJCCB-JYRVWZFOSA-N                                                                                                                          
SVB SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)NC(=O)CN2C(=S)S\C(=C/c3c(Cl)ccc(Cl)c3Cl)C2=O"                                                                                            
SVB SMILES           CACTVS               3.385 "CN1CCN(CC1)NC(=O)CN2C(=S)SC(=Cc3c(Cl)ccc(Cl)c3Cl)C2=O"                                                                                              
SVB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1CCN(CC1)NC(=O)CN2C(=O)/C(=C/c3c(ccc(c3Cl)Cl)Cl)/SC2=S"                                                                                           
SVB SMILES           "OpenEye OEToolkits" 1.7.6 "CN1CCN(CC1)NC(=O)CN2C(=O)C(=Cc3c(ccc(c3Cl)Cl)Cl)SC2=S"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SVB "SYSTEMATIC NAME" ACDLabs              12.01 "N-(4-methylpiperazin-1-yl)-2-[(5Z)-4-oxo-2-thioxo-5-(2,3,6-trichlorobenzylidene)-1,3-thiazolidin-3-yl]acetamide"                                 
SVB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-(4-methylpiperazin-1-yl)-2-[(5Z)-4-oxidanylidene-2-sulfanylidene-5-[[2,3,6-tris(chloranyl)phenyl]methylidene]-1,3-thiazolidin-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SVB "Create component" 2014-04-09 PDBJ 
SVB "Initial release"  2014-11-19 RCSB 
# 
