data_VMB
# 
_chem_comp.id                                    VMB 
_chem_comp.name                                  "N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4'-(trifluoromethyl)[1,1'-biphenyl]-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H20 F6 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VMB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EA6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VMB C1  C1  C 0 1 N N N 4.024  -18.731 21.675 0.993  -2.234 3.608  C1  VMB 1  
VMB C10 C2  C 0 1 Y N N 10.275 -19.957 20.263 -1.267 2.598  -0.078 C10 VMB 2  
VMB C11 C3  C 0 1 Y N N 10.453 -21.282 20.660 -0.599 3.821  -0.027 C11 VMB 3  
VMB C12 C4  C 0 1 Y N N 11.666 -21.923 20.412 -1.299 4.997  -0.197 C12 VMB 4  
VMB C13 C5  C 0 1 Y N N 12.713 -21.226 19.800 -2.666 4.973  -0.417 C13 VMB 5  
VMB C14 C6  C 0 1 Y N N 12.516 -19.908 19.380 -3.345 3.772  -0.470 C14 VMB 6  
VMB C15 C7  C 0 1 Y N N 11.296 -19.260 19.599 -2.655 2.575  -0.308 C15 VMB 7  
VMB C16 C8  C 0 1 Y N N 11.150 -17.927 19.022 -3.379 1.283  -0.364 C16 VMB 8  
VMB C17 C9  C 0 1 Y N N 12.100 -16.940 19.280 -3.337 0.409  0.721  C17 VMB 9  
VMB C18 C10 C 0 1 Y N N 11.967 -15.670 18.727 -4.014 -0.792 0.663  C18 VMB 10 
VMB C19 C11 C 0 1 Y N N 10.880 -15.387 17.893 -4.732 -1.130 -0.470 C19 VMB 11 
VMB C20 C12 C 0 1 Y N N 9.931  -16.373 17.618 -4.777 -0.267 -1.550 C20 VMB 12 
VMB C21 C13 C 0 1 Y N N 10.066 -17.644 18.177 -4.110 0.939  -1.501 C21 VMB 13 
VMB C22 C14 C 0 1 N N N 10.717 -14.046 17.285 -5.468 -2.444 -0.528 C22 VMB 14 
VMB C26 C15 C 0 1 Y N N 6.262  -18.643 19.531 2.987  0.361  0.410  C26 VMB 15 
VMB C27 C16 C 0 1 Y N N 6.002  -19.341 18.352 3.607  1.436  1.018  C27 VMB 16 
VMB C28 C17 C 0 1 Y N N 5.722  -18.657 17.164 4.955  1.664  0.813  C28 VMB 17 
VMB C29 C18 C 0 1 Y N N 5.713  -17.261 17.137 5.683  0.816  -0.001 C29 VMB 18 
VMB C3  C19 C 0 1 N N N 3.540  -21.043 22.123 1.681  -2.660 1.203  C3  VMB 19 
VMB C30 C20 C 0 1 Y N N 5.991  -16.551 18.308 5.063  -0.259 -0.609 C30 VMB 20 
VMB C31 C21 C 0 1 Y N N 6.258  -17.243 19.496 3.717  -0.490 -0.400 C31 VMB 21 
VMB C32 C22 C 0 1 N N N 6.014  -15.061 18.283 5.857  -1.183 -1.497 C32 VMB 22 
VMB C4  C23 C 0 1 N N N 5.683  -20.506 21.226 1.301  -0.401 2.033  C4  VMB 23 
VMB C6  C24 C 0 1 N N S 6.575  -19.382 20.810 1.517  0.114  0.633  C6  VMB 24 
VMB C8  C25 C 0 1 N N N 9.006  -19.282 20.576 -0.523 1.336  0.103  C8  VMB 25 
VMB F23 F1  F 0 1 N N N 11.153 -13.023 18.064 -6.767 -2.273 -0.038 F23 VMB 26 
VMB F24 F2  F 0 1 N N N 11.399 -13.915 16.129 -5.523 -2.890 -1.852 F24 VMB 27 
VMB F25 F3  F 0 1 N N N 9.441  -13.774 16.919 -4.796 -3.390 0.255  F25 VMB 28 
VMB F33 F4  F 0 1 N N N 6.291  -14.579 17.044 5.312  -1.174 -2.785 F33 VMB 29 
VMB F34 F5  F 0 1 N N N 4.881  -14.447 18.670 7.186  -0.751 -1.550 F34 VMB 30 
VMB F35 F6  F 0 1 N N N 7.015  -14.542 19.054 5.808  -2.482 -0.979 F35 VMB 31 
VMB N2  N1  N 0 1 N N N 4.480  -20.077 21.680 1.325  -1.726 2.274  N2  VMB 32 
VMB N7  N2  N 0 1 N N N 7.854  -20.025 20.577 0.779  1.366  0.453  N7  VMB 33 
VMB O5  O1  O 0 1 N N N 5.995  -21.688 21.252 1.107  0.378  2.942  O5  VMB 34 
VMB O9  O2  O 0 1 N N N 9.088  -18.093 20.840 -1.083 0.271  -0.064 O9  VMB 35 
VMB H1  H1  H 0 1 N N N 3.012  -18.685 22.104 0.757  -1.398 4.266  H1  VMB 36 
VMB H2  H2  H 0 1 N N N 4.706  -18.111 22.276 0.132  -2.898 3.541  H2  VMB 37 
VMB H3  H3  H 0 1 N N N 4.002  -18.355 20.641 1.845  -2.783 4.010  H3  VMB 38 
VMB H4  H4  H 0 1 N N N 9.653  -21.810 21.158 0.467  3.847  0.145  H4  VMB 39 
VMB H5  H5  H 0 1 N N N 11.797 -22.958 20.692 -0.779 5.943  -0.157 H5  VMB 40 
VMB H6  H6  H 0 1 N N N 13.670 -21.705 19.653 -3.205 5.900  -0.548 H6  VMB 41 
VMB H7  H7  H 0 1 N N N 13.316 -19.383 18.880 -4.410 3.761  -0.647 H7  VMB 42 
VMB H8  H8  H 0 1 N N N 12.946 -17.163 19.914 -2.776 0.672  1.606  H8  VMB 43 
VMB H9  H9  H 0 1 N N N 12.700 -14.906 18.941 -3.982 -1.470 1.503  H9  VMB 44 
VMB H10 H10 H 0 1 N N N 9.093  -16.152 16.973 -5.339 -0.537 -2.432 H10 VMB 45 
VMB H11 H11 H 0 1 N N N 9.336  -18.410 17.959 -4.146 1.612  -2.345 H11 VMB 46 
VMB H12 H12 H 0 1 N N N 6.017  -20.421 18.356 3.038  2.099  1.654  H12 VMB 47 
VMB H13 H13 H 0 1 N N N 5.511  -19.212 16.262 5.440  2.504  1.288  H13 VMB 48 
VMB H14 H14 H 0 1 N N N 5.493  -16.735 16.220 6.736  0.994  -0.161 H14 VMB 49 
VMB H15 H15 H 0 1 N N N 2.623  -20.536 22.457 0.775  -3.007 0.707  H15 VMB 50 
VMB H16 H16 H 0 1 N N N 3.300  -21.727 21.296 2.322  -2.156 0.480  H16 VMB 51 
VMB H17 H17 H 0 1 N N N 3.968  -21.615 22.960 2.212  -3.513 1.627  H17 VMB 52 
VMB H18 H18 H 0 1 N N N 6.464  -16.688 20.399 3.232  -1.330 -0.875 H18 VMB 53 
VMB H19 H19 H 0 1 N N N 6.661  -18.659 21.634 1.160  -0.625 -0.085 H19 VMB 54 
VMB H20 H20 H 0 1 N N N 7.896  -21.011 20.417 1.226  2.216  0.586  H20 VMB 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VMB F24 C22 SING N N 1  
VMB F25 C22 SING N N 2  
VMB F33 C32 SING N N 3  
VMB C29 C28 DOUB Y N 4  
VMB C29 C30 SING Y N 5  
VMB C28 C27 SING Y N 6  
VMB C22 C19 SING N N 7  
VMB C22 F23 SING N N 8  
VMB C20 C19 DOUB Y N 9  
VMB C20 C21 SING Y N 10 
VMB C19 C18 SING Y N 11 
VMB C21 C16 DOUB Y N 12 
VMB C32 C30 SING N N 13 
VMB C32 F34 SING N N 14 
VMB C32 F35 SING N N 15 
VMB C30 C31 DOUB Y N 16 
VMB C27 C26 DOUB Y N 17 
VMB C18 C17 DOUB Y N 18 
VMB C16 C17 SING Y N 19 
VMB C16 C15 SING N N 20 
VMB C14 C15 DOUB Y N 21 
VMB C14 C13 SING Y N 22 
VMB C31 C26 SING Y N 23 
VMB C26 C6  SING N N 24 
VMB C15 C10 SING Y N 25 
VMB C13 C12 DOUB Y N 26 
VMB C10 C8  SING N N 27 
VMB C10 C11 DOUB Y N 28 
VMB C12 C11 SING Y N 29 
VMB C8  N7  SING N N 30 
VMB C8  O9  DOUB N N 31 
VMB N7  C6  SING N N 32 
VMB C6  C4  SING N N 33 
VMB C4  O5  DOUB N N 34 
VMB C4  N2  SING N N 35 
VMB C1  N2  SING N N 36 
VMB N2  C3  SING N N 37 
VMB C1  H1  SING N N 38 
VMB C1  H2  SING N N 39 
VMB C1  H3  SING N N 40 
VMB C11 H4  SING N N 41 
VMB C12 H5  SING N N 42 
VMB C13 H6  SING N N 43 
VMB C14 H7  SING N N 44 
VMB C17 H8  SING N N 45 
VMB C18 H9  SING N N 46 
VMB C20 H10 SING N N 47 
VMB C21 H11 SING N N 48 
VMB C27 H12 SING N N 49 
VMB C28 H13 SING N N 50 
VMB C29 H14 SING N N 51 
VMB C3  H15 SING N N 52 
VMB C3  H16 SING N N 53 
VMB C3  H17 SING N N 54 
VMB C31 H18 SING N N 55 
VMB C6  H19 SING N N 56 
VMB N7  H20 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VMB SMILES           ACDLabs              12.01 "O=C(NC(c1cccc(c1)C(F)(F)F)C(=O)N(C)C)c1ccccc1c1ccc(cc1)C(F)(F)F"                                                                                                      
VMB InChI            InChI                1.06  "InChI=1S/C25H20F6N2O2/c1-33(2)23(35)21(16-6-5-7-18(14-16)25(29,30)31)32-22(34)20-9-4-3-8-19(20)15-10-12-17(13-11-15)24(26,27)28/h3-14,21H,1-2H3,(H,32,34)/t21-/m0/s1" 
VMB InChIKey         InChI                1.06  XHKLRVAMXWYKMX-NRFANRHFSA-N                                                                                                                                            
VMB SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)[C@@H](NC(=O)c1ccccc1c2ccc(cc2)C(F)(F)F)c3cccc(c3)C(F)(F)F"                                                                                                 
VMB SMILES           CACTVS               3.385 "CN(C)C(=O)[CH](NC(=O)c1ccccc1c2ccc(cc2)C(F)(F)F)c3cccc(c3)C(F)(F)F"                                                                                                   
VMB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)[C@H](c1cccc(c1)C(F)(F)F)NC(=O)c2ccccc2c3ccc(cc3)C(F)(F)F"                                                                                                  
VMB SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C(c1cccc(c1)C(F)(F)F)NC(=O)c2ccccc2c3ccc(cc3)C(F)(F)F"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VMB "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4'-(trifluoromethyl)[1,1'-biphenyl]-2-carboxamide"      
VMB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-2-(dimethylamino)-2-oxidanylidene-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VMB "Create component" 2022-09-02 RCSB 
VMB "Initial release"  2023-05-03 RCSB 
# 
