data_WMB
# 
_chem_comp.id                                    WMB 
_chem_comp.name                                  "5-{[(3M)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}-3,6-dihydro-2H-pyran-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H21 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-15 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.463 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WMB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G0Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WMB C02 C1  C 0 1 Y N N 16.887 -4.825 -21.810 -0.680 -1.003 -0.259 C02 WMB 1  
WMB C05 C2  C 0 1 Y N N 14.649 -4.820 -25.456 -0.958 3.276  0.023  C05 WMB 2  
WMB C10 C3  C 0 1 N N N 13.221 -5.069 -25.828 -0.066 4.490  0.015  C10 WMB 3  
WMB C11 C4  C 0 1 N N N 12.519 -6.143 -25.044 -0.292 5.525  -1.089 C11 WMB 4  
WMB C13 C5  C 0 1 Y N N 19.324 -4.334 -21.959 -2.888 -2.232 -0.134 C13 WMB 5  
WMB C15 C6  C 0 1 N N N 19.498 -3.903 -24.516 -4.375 -0.212 0.106  C15 WMB 6  
WMB C16 C7  C 0 1 N N N 20.822 -3.212 -24.135 -5.482 -1.196 -0.278 C16 WMB 7  
WMB C17 C8  C 0 1 N N N 21.541 -3.980 -23.052 -5.272 -2.510 0.481  C17 WMB 8  
WMB C18 C9  C 0 1 N N N 20.819 -3.973 -21.795 -4.039 -3.218 -0.093 C18 WMB 9  
WMB C19 C10 C 0 1 N N N 15.156 -5.468 -20.172 1.630  -1.469 -0.486 C19 WMB 10 
WMB C20 C11 C 0 1 N N N 13.726 -5.645 -20.109 3.029  -1.009 -0.578 C20 WMB 11 
WMB C22 C12 C 0 1 N N N 13.056 -5.984 -18.920 3.651  -0.614 0.535  C22 WMB 12 
WMB C23 C13 C 0 1 N N N 11.618 -6.215 -18.912 5.074  -0.125 0.524  C23 WMB 13 
WMB C24 C14 C 0 1 N N N 10.991 -6.246 -20.318 5.751  -0.547 -0.782 C24 WMB 14 
WMB C26 C15 C 0 1 N N N 12.894 -5.426 -21.359 3.704  -1.009 -1.921 C26 WMB 15 
WMB C27 C16 C 0 1 N N N 13.701 -6.085 -17.555 2.921  -0.657 1.815  C27 WMB 16 
WMB S01 S1  S 0 1 Y N N 18.237 -4.722 -20.782 -1.197 -2.679 -0.309 S01 WMB 17 
WMB C03 C17 C 0 1 Y N N 17.290 -4.602 -23.178 -1.767 -0.188 -0.117 C03 WMB 18 
WMB N04 N1  N 0 1 N N N 15.571 -5.078 -21.441 0.634  -0.571 -0.346 N04 WMB 19 
WMB N06 N2  N 0 1 Y N N 15.588 -4.594 -26.318 -2.254 3.277  0.135  N06 WMB 20 
WMB O07 O1  O 0 1 Y N N 16.753 -4.476 -25.537 -2.686 2.144  0.103  O07 WMB 21 
WMB N08 N3  N 0 1 Y N N 15.078 -4.878 -24.195 -0.560 2.000  -0.088 N08 WMB 22 
WMB C09 C18 C 0 1 Y N N 16.366 -4.640 -24.303 -1.669 1.277  -0.037 C09 WMB 23 
WMB C12 C19 C 0 1 N N N 12.165 -4.727 -24.827 -0.706 5.839  0.350  C12 WMB 24 
WMB C14 C20 C 0 1 Y N N 18.736 -4.279 -23.300 -3.027 -0.902 -0.052 C14 WMB 25 
WMB O21 O2  O 0 1 N N N 15.939 -5.639 -19.247 1.376  -2.656 -0.536 O21 WMB 26 
WMB O25 O3  O 0 1 N N N 11.581 -6.209 -21.251 4.887  -0.206 -1.873 O25 WMB 27 
WMB O28 O4  O 0 1 N N N 13.447 -5.150 -16.696 1.813  -1.152 1.866  O28 WMB 28 
WMB O29 O5  O 0 1 N N N 14.222 -7.194 -17.185 3.483  -0.148 2.929  O29 WMB 29 
WMB H31 H1  H 0 1 N N N 12.955 -4.972 -26.891 0.959  4.323  0.345  H31 WMB 30 
WMB H33 H2  H 0 1 N N N 11.809 -6.816 -25.548 0.584  6.039  -1.484 H33 WMB 31 
WMB H32 H3  H 0 1 N N N 13.062 -6.699 -24.266 -1.086 5.328  -1.809 H32 WMB 32 
WMB H37 H4  H 0 1 N N N 19.718 -4.809 -25.099 -4.418 0.659  -0.548 H37 WMB 33 
WMB H36 H5  H 0 1 N N N 18.893 -3.214 -25.123 -4.507 0.099  1.142  H36 WMB 34 
WMB H38 H6  H 0 1 N N N 21.467 -3.155 -25.024 -6.452 -0.774 -0.016 H38 WMB 35 
WMB H39 H7  H 0 1 N N N 20.606 -2.196 -23.773 -5.444 -1.386 -1.351 H39 WMB 36 
WMB H40 H8  H 0 1 N N N 21.666 -5.022 -23.382 -5.120 -2.299 1.540  H40 WMB 37 
WMB H41 H9  H 0 1 N N N 22.530 -3.525 -22.894 -6.148 -3.147 0.357  H41 WMB 38 
WMB H42 H10 H 0 1 N N N 20.891 -2.968 -21.354 -4.246 -3.581 -1.100 H42 WMB 39 
WMB H43 H11 H 0 1 N N N 21.285 -4.705 -21.118 -3.779 -4.057 0.553  H43 WMB 40 
WMB H45 H12 H 0 1 N N N 11.424 -7.181 -18.423 5.085  0.962  0.604  H45 WMB 41 
WMB H44 H13 H 0 1 N N N 11.140 -5.410 -18.336 5.613  -0.556 1.368  H44 WMB 42 
WMB H47 H14 H 0 1 N N N 10.410 -7.179 -20.367 6.700  -0.021 -0.889 H47 WMB 43 
WMB H46 H15 H 0 1 N N N 10.307 -5.385 -20.361 5.924  -1.623 -0.774 H46 WMB 44 
WMB H49 H16 H 0 1 N N N 12.672 -4.354 -21.467 3.967  -2.031 -2.194 H49 WMB 45 
WMB H48 H17 H 0 1 N N N 13.456 -5.775 -22.238 3.024  -0.599 -2.668 H48 WMB 46 
WMB H30 H18 H 0 1 N N N 14.867 -4.971 -22.143 0.837  0.376  -0.306 H30 WMB 47 
WMB H34 H19 H 0 1 N N N 12.443 -4.231 -23.885 -1.772 5.848  0.577  H34 WMB 48 
WMB H35 H20 H 0 1 N N N 11.190 -4.348 -25.167 -0.101 6.560  0.902  H35 WMB 49 
WMB H1  H21 H 0 1 N N N 14.365 -7.180 -16.246 2.966  -0.200 3.745  H1  WMB 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WMB S01 C02 SING Y N 1  
WMB C02 C03 DOUB Y N 2  
WMB C02 N04 SING N N 3  
WMB C05 N06 DOUB Y N 4  
WMB N06 O07 SING Y N 5  
WMB C05 N08 SING Y N 6  
WMB C03 C09 SING N N 7  
WMB O07 C09 SING Y N 8  
WMB N08 C09 DOUB Y N 9  
WMB C05 C10 SING N N 10 
WMB C10 C11 SING N N 11 
WMB C10 C12 SING N N 12 
WMB C11 C12 SING N N 13 
WMB S01 C13 SING Y N 14 
WMB C03 C14 SING Y N 15 
WMB C13 C14 DOUB Y N 16 
WMB C14 C15 SING N N 17 
WMB C15 C16 SING N N 18 
WMB C16 C17 SING N N 19 
WMB C13 C18 SING N N 20 
WMB C17 C18 SING N N 21 
WMB N04 C19 SING N N 22 
WMB C19 C20 SING N N 23 
WMB C19 O21 DOUB N N 24 
WMB C20 C22 DOUB N N 25 
WMB C22 C23 SING N N 26 
WMB C23 C24 SING N N 27 
WMB C24 O25 SING N N 28 
WMB C20 C26 SING N N 29 
WMB O25 C26 SING N N 30 
WMB C22 C27 SING N N 31 
WMB C27 O28 DOUB N N 32 
WMB C27 O29 SING N N 33 
WMB C10 H31 SING N N 34 
WMB C11 H33 SING N N 35 
WMB C11 H32 SING N N 36 
WMB C15 H37 SING N N 37 
WMB C15 H36 SING N N 38 
WMB C16 H38 SING N N 39 
WMB C16 H39 SING N N 40 
WMB C17 H40 SING N N 41 
WMB C17 H41 SING N N 42 
WMB C18 H42 SING N N 43 
WMB C18 H43 SING N N 44 
WMB C23 H45 SING N N 45 
WMB C23 H44 SING N N 46 
WMB C24 H47 SING N N 47 
WMB C24 H46 SING N N 48 
WMB C26 H49 SING N N 49 
WMB C26 H48 SING N N 50 
WMB N04 H30 SING N N 51 
WMB C12 H34 SING N N 52 
WMB C12 H35 SING N N 53 
WMB O29 H1  SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WMB SMILES           ACDLabs              12.01 "O=C(O)C=1CCOCC=1C(=O)Nc1sc2CCCCc2c1c1nc(no1)C1CC1"                                                                                                
WMB InChI            InChI                1.06  "InChI=1S/C20H21N3O5S/c24-17(13-9-27-8-7-11(13)20(25)26)22-19-15(12-3-1-2-4-14(12)29-19)18-21-16(23-28-18)10-5-6-10/h10H,1-9H2,(H,22,24)(H,25,26)" 
WMB InChIKey         InChI                1.06  LYHCQWUDTPXZGL-UHFFFAOYSA-N                                                                                                                        
WMB SMILES_CANONICAL CACTVS               3.385 "OC(=O)C1=C(COCC1)C(=O)Nc2sc3CCCCc3c2c4onc(n4)C5CC5"                                                                                               
WMB SMILES           CACTVS               3.385 "OC(=O)C1=C(COCC1)C(=O)Nc2sc3CCCCc3c2c4onc(n4)C5CC5"                                                                                               
WMB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCc2c(c(c(s2)NC(=O)C3=C(CCOC3)C(=O)O)c4nc(no4)C5CC5)C1"                                                                                         
WMB SMILES           "OpenEye OEToolkits" 2.0.7 "C1CCc2c(c(c(s2)NC(=O)C3=C(CCOC3)C(=O)O)c4nc(no4)C5CC5)C1"                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WMB "SYSTEMATIC NAME" ACDLabs              12.01 "5-{[(3M)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}-3,6-dihydro-2H-pyran-4-carboxylic acid" 
WMB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]-3,6-dihydro-2~{H}-pyran-4-carboxylic acid"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WMB "Create component" 2023-05-15 RCSB 
WMB "Initial release"  2023-06-14 RCSB 
# 
