data_XDB
# 
_chem_comp.id                                    XDB 
_chem_comp.name                                  "3-fluoro-4-({[1-(3-{2-[(5-methyl-2H-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenyl}propanoyl)piperidin-4-yl]methyl}sulfanyl)benzene-1-sulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 F4 N6 O3 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        600.652 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XDB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G30 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XDB C10 C1  C 0 1 Y N N N N N -16.124 13.672 42.686 7.615  -0.287 0.970  C10 XDB 1  
XDB C11 C2  C 0 1 Y N N N N N -15.888 13.571 44.018 6.362  -0.583 0.470  C11 XDB 2  
XDB C13 C3  C 0 1 N N N N N N -15.421 12.978 47.058 3.645  -1.490 -0.106 C13 XDB 3  
XDB C15 C4  C 0 1 N N N N N N -15.527 10.874 48.304 1.655  -2.861 0.531  C15 XDB 4  
XDB C16 C5  C 0 1 N N N N N N -14.776 9.939  49.197 0.253  -3.301 0.099  C16 XDB 5  
XDB C18 C6  C 0 1 N N N N N N -12.764 10.079 47.821 -0.062 -1.077 -1.062 C18 XDB 6  
XDB C19 C7  C 0 1 N N N N N N -13.352 11.277 47.039 1.344  -0.662 -0.617 C19 XDB 7  
XDB C20 C8  C 0 1 N N N N N N -14.400 8.081  47.630 -1.756 -1.953 0.473  C20 XDB 8  
XDB C21 C9  C 0 1 N N N N N N -13.411 7.220  46.847 -2.583 -0.720 0.217  C21 XDB 9  
XDB C22 C10 C 0 1 N N N N N N -14.149 6.307  45.917 -3.877 -0.796 1.031  C22 XDB 10 
XDB C23 C11 C 0 1 Y N N N N N -13.162 5.493  45.201 -4.705 0.437  0.775  C23 XDB 11 
XDB C24 C12 C 0 1 Y N N N N N -12.920 4.227  45.709 -4.619 1.518  1.632  C24 XDB 12 
XDB C25 C13 C 0 1 Y N N N N N -12.047 3.357  45.085 -5.378 2.649  1.397  C25 XDB 13 
XDB C26 C14 C 0 1 Y N N N N N -11.400 3.763  43.976 -6.223 2.699  0.305  C26 XDB 14 
XDB C27 C15 C 0 1 Y N N N N N -11.601 5.054  43.453 -6.309 1.618  -0.553 C27 XDB 15 
XDB C28 C16 C 0 1 Y N N N N N -12.500 5.895  44.051 -5.547 0.489  -0.321 C28 XDB 16 
XDB C1  C17 C 0 1 Y N N N N N -14.804 14.215 44.585 5.981  -0.101 -0.776 C1  XDB 17 
XDB C2  C18 C 0 1 Y N N N N N -14.015 15.006 43.778 6.864  0.679  -1.516 C2  XDB 18 
XDB F3  F1  F 0 1 N N N N N N -13.007 15.738 44.296 6.497  1.150  -2.728 F3  XDB 19 
XDB C4  C19 C 0 1 Y N N N N N -14.232 15.103 42.445 8.116  0.971  -1.009 C4  XDB 20 
XDB C5  C20 C 0 1 Y N N N N N -15.282 14.422 41.866 8.489  0.493  0.234  C5  XDB 21 
XDB S6  S1  S 0 1 N N N N N N -15.545 14.461 40.256 10.086 0.868  0.877  S6  XDB 22 
XDB O7  O1  O 0 1 N N N N N N -16.091 13.189 39.947 10.912 1.154  -0.243 O7  XDB 23 
XDB N8  N1  N 0 1 N N N N N N -16.711 15.567 40.123 9.951  2.280  1.731  N8  XDB 24 
XDB O9  O2  O 0 1 N N N N N N -14.407 14.930 39.511 10.385 -0.147 1.825  O9  XDB 25 
XDB S12 S2  S 0 1 N N N N N N -14.304 14.096 46.174 4.383  -0.477 -1.417 S12 XDB 26 
XDB C14 C21 C 0 1 N N N N N N -14.552 11.947 47.828 2.231  -1.905 -0.516 C14 XDB 27 
XDB N17 N2  N 0 1 N N N N N N -13.846 9.205  48.325 -0.566 -2.105 -0.140 N17 XDB 28 
XDB C29 C22 C 0 1 N N N N N N -12.854 7.120  43.263 -5.636 -0.687 -1.259 C29 XDB 29 
XDB N30 N3  N 0 1 Y N N N N N -11.773 8.046  43.308 -6.605 -1.655 -0.738 N30 XDB 30 
XDB N31 N4  N 0 1 Y N N N N N -10.788 8.141  42.344 -7.865 -1.667 -1.003 N31 XDB 31 
XDB N32 N5  N 0 1 Y N N N N N -9.998  9.116  42.716 -8.410 -2.654 -0.376 N32 XDB 32 
XDB C33 C23 C 0 1 Y N N N N N -10.467 9.692  43.961 -7.446 -3.275 0.303  C33 XDB 33 
XDB N34 N6  N 0 1 Y N N N N N -11.607 8.996  44.351 -6.331 -2.633 0.055  N34 XDB 34 
XDB C35 C24 C 0 1 N N N N N N -9.782  10.806 44.660 -7.607 -4.488 1.184  C35 XDB 35 
XDB C36 C25 C 0 1 N N N N N N -10.480 2.832  43.230 -7.052 3.932  0.050  C36 XDB 36 
XDB F37 F2  F 0 1 N N N N N N -9.579  2.214  43.935 -6.795 4.880  1.045  F37 XDB 37 
XDB F38 F3  F 0 1 N N N N N N -11.067 1.774  42.739 -6.720 4.466  -1.200 F38 XDB 38 
XDB F39 F4  F 0 1 N N N N N N -9.843  3.408  42.197 -8.409 3.593  0.067  F39 XDB 39 
XDB O40 O3  O 0 1 N N N N N N -15.631 7.824  47.701 -2.161 -2.808 1.232  O40 XDB 40 
XDB H44 H1  H 0 1 N N N N N N -16.975 13.165 42.255 7.912  -0.661 1.938  H44 XDB 41 
XDB H45 H2  H 0 1 N N N N N N -16.550 12.985 44.638 5.679  -1.189 1.047  H45 XDB 42 
XDB H46 H3  H 0 1 N N N N N N -16.039 13.550 47.766 4.254  -2.381 0.051  H46 XDB 43 
XDB H47 H4  H 0 1 N N N N N N -16.073 12.457 46.341 3.601  -0.913 0.818  H47 XDB 44 
XDB H49 H5  H 0 1 N N N N N N -16.354 11.340 48.860 1.597  -2.353 1.494  H49 XDB 45 
XDB H50 H6  H 0 1 N N N N N N -15.930 10.324 47.440 2.300  -3.735 0.619  H50 XDB 46 
XDB H51 H7  H 0 1 N N N N N N -14.220 10.503 49.960 0.320  -3.887 -0.818 H51 XDB 47 
XDB H52 H8  H 0 1 N N N N N N -15.469 9.241  49.690 -0.200 -3.902 0.887  H52 XDB 48 
XDB H53 H9  H 0 1 N N N N N N -12.177 10.456 48.672 -0.723 -0.211 -1.040 H53 XDB 49 
XDB H54 H10 H 0 1 N N N N N N -12.111 9.497  47.154 -0.021 -1.480 -2.074 H54 XDB 50 
XDB H56 H11 H 0 1 N N N N N N -13.718 10.923 46.064 1.767  0.029  -1.346 H56 XDB 51 
XDB H55 H12 H 0 1 N N N N N N -12.562 12.027 46.885 1.288  -0.174 0.356  H55 XDB 52 
XDB H58 H13 H 0 1 N N N N N N -12.743 7.871  46.264 -2.020 0.165  0.514  H58 XDB 53 
XDB H57 H14 H 0 1 N N N N N N -12.815 6.619  47.550 -2.825 -0.658 -0.844 H57 XDB 54 
XDB H59 H15 H 0 1 N N N N N N -14.824 5.655  46.491 -4.441 -1.680 0.734  H59 XDB 55 
XDB H60 H16 H 0 1 N N N N N N -14.735 6.900  45.199 -3.636 -0.858 2.092  H60 XDB 56 
XDB H61 H17 H 0 1 N N N N N N -13.424 3.914  46.611 -3.958 1.478  2.486  H61 XDB 57 
XDB H62 H18 H 0 1 N N N N N N -11.886 2.365  45.481 -5.311 3.493  2.068  H62 XDB 58 
XDB H63 H19 H 0 1 N N N N N N -11.049 5.379  42.584 -6.970 1.658  -1.406 H63 XDB 59 
XDB H41 H20 H 0 1 N N N N N N -13.583 15.714 41.835 8.803  1.576  -1.583 H41 XDB 60 
XDB H43 H21 H 0 1 N N N N N N -16.958 15.677 39.160 9.094  2.729  1.795  H43 XDB 61 
XDB H42 H22 H 0 1 N N N N N N -17.513 15.270 40.641 10.730 2.659  2.168  H42 XDB 62 
XDB H48 H23 H 0 1 N N N N N N -14.131 12.449 48.712 2.266  -2.405 -1.484 H48 XDB 63 
XDB H65 H24 H 0 1 N N N N N N -13.052 6.839  42.218 -5.959 -0.343 -2.242 H65 XDB 64 
XDB H64 H25 H 0 1 N N N N N N -13.753 7.585  43.694 -4.658 -1.160 -1.342 H64 XDB 65 
XDB H66 H26 H 0 1 N N N N N N -8.891  11.105 44.089 -7.469 -5.390 0.588  H66 XDB 66 
XDB H68 H27 H 0 1 N N N N N N -10.467 11.662 44.745 -6.862 -4.460 1.979  H68 XDB 67 
XDB H67 H28 H 0 1 N N N N N N -9.480  10.477 45.665 -8.605 -4.489 1.621  H67 XDB 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XDB C1  C2  DOUB Y N 1  
XDB C1  C11 SING Y N 2  
XDB C1  S12 SING N N 3  
XDB C2  F3  SING N N 4  
XDB C2  C4  SING Y N 5  
XDB C4  C5  DOUB Y N 6  
XDB C5  S6  SING N N 7  
XDB C5  C10 SING Y N 8  
XDB S6  O7  DOUB N N 9  
XDB S6  N8  SING N N 10 
XDB S6  O9  DOUB N N 11 
XDB C10 C11 DOUB Y N 12 
XDB S12 C13 SING N N 13 
XDB C13 C14 SING N N 14 
XDB C14 C15 SING N N 15 
XDB C14 C19 SING N N 16 
XDB C15 C16 SING N N 17 
XDB C16 N17 SING N N 18 
XDB N17 C18 SING N N 19 
XDB N17 C20 SING N N 20 
XDB C18 C19 SING N N 21 
XDB C20 C21 SING N N 22 
XDB C20 O40 DOUB N N 23 
XDB C21 C22 SING N N 24 
XDB C22 C23 SING N N 25 
XDB C23 C24 DOUB Y N 26 
XDB C23 C28 SING Y N 27 
XDB C24 C25 SING Y N 28 
XDB C25 C26 DOUB Y N 29 
XDB C26 C27 SING Y N 30 
XDB C26 C36 SING N N 31 
XDB C27 C28 DOUB Y N 32 
XDB C28 C29 SING N N 33 
XDB C29 N30 SING N N 34 
XDB N30 N31 SING Y N 35 
XDB N30 N34 SING Y N 36 
XDB N31 N32 DOUB Y N 37 
XDB N32 C33 SING Y N 38 
XDB C33 N34 DOUB Y N 39 
XDB C33 C35 SING N N 40 
XDB C36 F37 SING N N 41 
XDB C36 F38 SING N N 42 
XDB C36 F39 SING N N 43 
XDB C10 H44 SING N N 44 
XDB C11 H45 SING N N 45 
XDB C13 H46 SING N N 46 
XDB C13 H47 SING N N 47 
XDB C15 H49 SING N N 48 
XDB C15 H50 SING N N 49 
XDB C16 H51 SING N N 50 
XDB C16 H52 SING N N 51 
XDB C18 H53 SING N N 52 
XDB C18 H54 SING N N 53 
XDB C19 H56 SING N N 54 
XDB C19 H55 SING N N 55 
XDB C21 H58 SING N N 56 
XDB C21 H57 SING N N 57 
XDB C22 H59 SING N N 58 
XDB C22 H60 SING N N 59 
XDB C24 H61 SING N N 60 
XDB C25 H62 SING N N 61 
XDB C27 H63 SING N N 62 
XDB C4  H41 SING N N 63 
XDB N8  H43 SING N N 64 
XDB N8  H42 SING N N 65 
XDB C14 H48 SING N N 66 
XDB C29 H65 SING N N 67 
XDB C29 H64 SING N N 68 
XDB C35 H66 SING N N 69 
XDB C35 H68 SING N N 70 
XDB C35 H67 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XDB SMILES           ACDLabs              12.01 "NS(=O)(=O)c1ccc(SCC2CCN(CC2)C(=O)CCc2ccc(cc2Cn2nc(C)nn2)C(F)(F)F)c(F)c1"                                                                                                                               
XDB InChI            InChI                1.06  "InChI=1S/C25H28F4N6O3S2/c1-16-31-33-35(32-16)14-19-12-20(25(27,28)29)4-2-18(19)3-7-24(36)34-10-8-17(9-11-34)15-39-23-6-5-21(13-22(23)26)40(30,37)38/h2,4-6,12-13,17H,3,7-11,14-15H2,1H3,(H2,30,37,38)" 
XDB InChIKey         InChI                1.06  DKGWFJXODFKPJZ-UHFFFAOYSA-N                                                                                                                                                                             
XDB SMILES_CANONICAL CACTVS               3.385 "Cc1nnn(Cc2cc(ccc2CCC(=O)N3CCC(CC3)CSc4ccc(cc4F)[S](N)(=O)=O)C(F)(F)F)n1"                                                                                                                               
XDB SMILES           CACTVS               3.385 "Cc1nnn(Cc2cc(ccc2CCC(=O)N3CCC(CC3)CSc4ccc(cc4F)[S](N)(=O)=O)C(F)(F)F)n1"                                                                                                                               
XDB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnn(n1)Cc2cc(ccc2CCC(=O)N3CCC(CC3)CSc4ccc(cc4F)S(=O)(=O)N)C(F)(F)F"                                                                                                                                 
XDB SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1nnn(n1)Cc2cc(ccc2CCC(=O)N3CCC(CC3)CSc4ccc(cc4F)S(=O)(=O)N)C(F)(F)F"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XDB "SYSTEMATIC NAME" ACDLabs              12.01 "3-fluoro-4-({[1-(3-{2-[(5-methyl-2H-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenyl}propanoyl)piperidin-4-yl]methyl}sulfanyl)benzene-1-sulfonamide"    
XDB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-fluoranyl-4-[[1-[3-[2-[(5-methyl-1,2,3,4-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenyl]propanoyl]piperidin-4-yl]methylsulfanyl]benzenesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XDB "Create component" 2023-06-06 RCSB 
XDB "Initial release"  2024-12-18 RCSB 
# 
