data_XIB
# 
_chem_comp.id                                    XIB 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-L-tyrosyl-D-alanine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H22 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-21 
_chem_comp.pdbx_modified_date                    2023-08-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.398 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XIB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F7K 
_chem_comp.pdbx_subcomponent_list                "PHQ TYR DAL" 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XIB C12 C16 C 0 1 N N N 174.741 188.261 97.416  0.946  0.626  -0.415 C1  PHQ 1  
XIB O3  O3  O 0 1 N N N 175.026 187.478 98.300  0.541  0.941  -1.516 O1  PHQ 2  
XIB O4  O4  O 0 1 N N N 173.484 188.680 97.159  2.221  0.887  -0.067 O2  PHQ 3  
XIB C13 C7  C 0 1 N N N 172.908 188.276 95.889  3.053  1.546  -1.058 C2  PHQ 4  
XIB C14 C17 C 0 1 Y N N 172.253 186.928 95.958  4.435  1.754  -0.495 C3  PHQ 5  
XIB C15 C8  C 0 1 Y N N 171.886 186.362 97.165  4.733  2.914  0.196  C4  PHQ 6  
XIB C16 C18 C 0 1 Y N N 171.287 185.114 97.203  6.001  3.105  0.712  C5  PHQ 7  
XIB C17 C9  C 0 1 Y N N 171.029 184.435 96.038  6.971  2.136  0.538  C6  PHQ 8  
XIB C18 C19 C 0 1 Y N N 171.375 184.992 94.836  6.672  0.973  -0.148 C7  PHQ 9  
XIB C19 C20 C 0 1 Y N N 171.988 186.236 94.794  5.404  0.782  -0.665 C8  PHQ 10 
XIB N2  N2  N 0 1 N N N 175.624 188.833 96.580  0.121  0.017  0.459  N   TYR 11 
XIB C4  C1  C 0 1 N N S 177.055 188.613 96.671  -1.266 -0.267 0.081  CA  TYR 12 
XIB C3  C13 C 0 1 N N N 177.767 189.880 97.128  -2.117 0.948  0.345  C   TYR 13 
XIB O1  O1  O 0 1 N N N 177.200 190.969 97.099  -1.615 1.952  0.805  O   TYR 14 
XIB C5  C2  C 0 1 N N N 177.628 188.182 95.321  -1.788 -1.445 0.905  CB  TYR 15 
XIB C6  C3  C 0 1 Y N N 176.851 187.031 94.739  -1.016 -2.689 0.549  CG  TYR 16 
XIB C7  C4  C 0 1 Y N N 175.697 187.252 94.004  0.134  -3.010 1.245  CD1 TYR 17 
XIB C11 C15 C 0 1 Y N N 177.257 185.719 94.939  -1.461 -3.510 -0.471 CD2 TYR 18 
XIB C8  C5  C 0 1 Y N N 174.967 186.202 93.476  0.845  -4.150 0.921  CE1 TYR 19 
XIB C10 C6  C 0 1 Y N N 176.538 184.660 94.415  -0.755 -4.651 -0.799 CE2 TYR 20 
XIB C9  C14 C 0 1 Y N N 175.392 184.903 93.680  0.403  -4.972 -0.105 CZ  TYR 21 
XIB O2  O2  O 0 1 N N N 174.669 183.872 93.163  1.100  -6.094 -0.427 OH  TYR 22 
XIB N1  N1  N 0 1 N N N 179.020 189.729 97.559  -3.437 0.919  0.072  N   DAL 23 
XIB C2  C12 C 0 1 N N R 179.783 190.035 98.761  -4.265 2.100  0.329  CA  DAL 24 
XIB C1  C11 C 0 1 N N N 179.374 191.389 99.333  -4.717 2.097  1.791  CB  DAL 25 
XIB C20 C10 C 0 1 N N N 181.298 190.048 98.512  -5.473 2.072  -0.571 C   DAL 26 
XIB O5  O5  O 0 1 N N N 181.953 189.088 98.958  -5.627 1.160  -1.347 O   DAL 27 
XIB O6  O6  O 0 1 N N N 181.773 191.014 97.884  -6.378 3.062  -0.509 OXT DAL 28 
XIB H15 H8  H 0 1 N N N 172.154 189.020 95.591  2.616  2.510  -1.316 H21 PHQ 29 
XIB H16 H9  H 0 1 N N N 173.707 188.242 95.134  3.114  0.924  -1.952 H22 PHQ 30 
XIB H17 H10 H 0 1 N N N 172.068 186.897 98.085  3.974  3.671  0.331  H41 PHQ 31 
XIB H18 H19 H 0 1 N N N 171.022 184.673 98.153  6.233  4.011  1.251  H51 PHQ 32 
XIB H19 H11 H 0 1 N N N 170.555 183.465 96.070  7.962  2.285  0.941  H61 PHQ 33 
XIB H20 H20 H 0 1 N N N 171.170 184.461 93.918  7.429  0.214  -0.281 H71 PHQ 34 
XIB H21 H21 H 0 1 N N N 172.260 186.667 93.842  5.170  -0.126 -1.200 H81 PHQ 35 
XIB H14 H18 H 0 1 N N N 175.279 189.438 95.862  0.445  -0.234 1.338  H   TYR 36 
XIB H6  H2  H 0 1 N N N 177.257 187.817 97.403  -1.309 -0.517 -0.979 HA  TYR 37 
XIB H7  H3  H 0 1 N N N 177.584 189.033 94.625  -1.663 -1.231 1.966  HB2 TYR 38 
XIB H8  H4  H 0 1 N N N 178.675 187.875 95.458  -2.845 -1.600 0.688  HB3 TYR 39 
XIB H9  H5  H 0 1 N N N 175.361 188.265 93.840  0.478  -2.370 2.044  HD1 TYR 40 
XIB H13 H17 H 0 1 N N N 178.150 185.522 95.514  -2.362 -3.259 -1.011 HD2 TYR 41 
XIB H10 H6  H 0 1 N N N 174.070 186.397 92.907  1.743  -4.400 1.465  HE1 TYR 42 
XIB H12 H7  H 0 1 N N N 176.871 183.646 94.579  -1.101 -5.290 -1.598 HE2 TYR 43 
XIB H11 H16 H 0 1 N N N 175.086 183.048 93.387  0.822  -6.883 0.059  HH  TYR 44 
XIB H5  H1  H 0 1 N N N 179.591 189.285 96.869  -3.838 0.116  -0.296 H   DAL 45 
XIB H4  H15 H 0 1 N N N 179.573 189.268 99.521  -3.684 3.001  0.131  HA  DAL 46 
XIB H1  H13 H 0 1 N N N 179.560 192.174 98.585  -3.843 2.117  2.442  HB1 DAL 47 
XIB H2  H14 H 0 1 N N N 178.304 191.371 99.587  -5.333 2.976  1.982  HB2 DAL 48 
XIB H3  H12 H 0 1 N N N 179.963 191.598 100.239 -5.297 1.196  1.990  HB3 DAL 49 
XIB H22 H22 H 0 1 N N N 182.713 190.905 97.798  -7.136 3.000  -1.106 HXT DAL 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XIB N1  C2  SING N N 1  
XIB N1  C3  SING N N 2  
XIB C4  C5  SING N N 3  
XIB C4  C3  SING N N 4  
XIB C4  N2  SING N N 5  
XIB C5  C6  SING N N 6  
XIB C6  C7  DOUB Y N 7  
XIB C6  C11 SING Y N 8  
XIB C7  C8  SING Y N 9  
XIB C8  C9  DOUB Y N 10 
XIB C10 C9  SING Y N 11 
XIB C10 C11 DOUB Y N 12 
XIB C13 O4  SING N N 13 
XIB C13 C14 SING N N 14 
XIB C15 C14 DOUB Y N 15 
XIB C15 C16 SING Y N 16 
XIB C17 C16 DOUB Y N 17 
XIB C17 C18 SING Y N 18 
XIB C20 C2  SING N N 19 
XIB C20 O5  DOUB N N 20 
XIB C20 O6  SING N N 21 
XIB C1  C2  SING N N 22 
XIB C3  O1  DOUB N N 23 
XIB C9  O2  SING N N 24 
XIB N2  C12 SING N N 25 
XIB C12 O3  DOUB N N 26 
XIB C12 O4  SING N N 27 
XIB C14 C19 SING Y N 28 
XIB C18 C19 DOUB Y N 29 
XIB N1  H5  SING N N 30 
XIB C4  H6  SING N N 31 
XIB C5  H7  SING N N 32 
XIB C5  H8  SING N N 33 
XIB C7  H9  SING N N 34 
XIB C8  H10 SING N N 35 
XIB C10 H12 SING N N 36 
XIB C13 H15 SING N N 37 
XIB C13 H16 SING N N 38 
XIB C15 H17 SING N N 39 
XIB C17 H19 SING N N 40 
XIB C1  H3  SING N N 41 
XIB C1  H1  SING N N 42 
XIB C1  H2  SING N N 43 
XIB C2  H4  SING N N 44 
XIB O2  H11 SING N N 45 
XIB C11 H13 SING N N 46 
XIB N2  H14 SING N N 47 
XIB C16 H18 SING N N 48 
XIB C18 H20 SING N N 49 
XIB C19 H21 SING N N 50 
XIB O6  H22 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XIB SMILES           ACDLabs              12.01 "Oc1ccc(CC(NC(=O)OCc2ccccc2)C(=O)NC(C)C(=O)O)cc1"                                                                                                                              
XIB InChI            InChI                1.06  "InChI=1S/C20H22N2O6/c1-13(19(25)26)21-18(24)17(11-14-7-9-16(23)10-8-14)22-20(27)28-12-15-5-3-2-4-6-15/h2-10,13,17,23H,11-12H2,1H3,(H,21,24)(H,22,27)(H,25,26)/t13-,17+/m1/s1" 
XIB InChIKey         InChI                1.06  LKRYTYVDKGHSPS-DYVFJYSZSA-N                                                                                                                                                    
XIB SMILES_CANONICAL CACTVS               3.385 "C[C@@H](NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)OCc2ccccc2)C(O)=O"                                                                                                                     
XIB SMILES           CACTVS               3.385 "C[CH](NC(=O)[CH](Cc1ccc(O)cc1)NC(=O)OCc2ccccc2)C(O)=O"                                                                                                                        
XIB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)O)NC(=O)[C@H](Cc1ccc(cc1)O)NC(=O)OCc2ccccc2"                                                                                                                      
XIB SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NC(=O)C(Cc1ccc(cc1)O)NC(=O)OCc2ccccc2"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XIB "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-L-tyrosyl-D-alanine"                                                          
XIB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[[(2~{S})-3-(4-hydroxyphenyl)-2-(phenylmethoxycarbonylamino)propanoyl]amino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XIB "Create component" 2022-11-21 RCSB 
XIB "Initial release"  2023-08-30 RCSB 
# 
