data_XJB
# 
_chem_comp.id                                    XJB 
_chem_comp.name                                  "3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H26 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-22 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        438.476 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XJB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F80 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XJB C16 C1  C 0 1 Y N N N N N -6.955  5.032  11.166 -4.016 0.255  0.209  C16 XJB 1  
XJB C18 C2  C 0 1 Y N N N N N -6.572  6.911  12.771 -2.539 -1.638 0.879  C18 XJB 2  
XJB C21 C3  C 0 1 N N N N N N -9.623  10.531 13.289 -2.027 -5.386 -2.032 C21 XJB 3  
XJB C20 C4  C 0 1 Y N N N N N -8.098  8.722  12.900 -2.254 -3.539 -0.553 C20 XJB 4  
XJB C17 C5  C 0 1 Y N N N N N -7.304  6.357  11.734 -3.400 -1.067 -0.057 C17 XJB 5  
XJB C14 C6  C 0 1 N N N N N N -12.347 6.232  15.974 5.184  -1.021 0.703  C14 XJB 6  
XJB C13 C7  C 0 1 N N N N N N -10.916 6.056  15.538 5.352  0.496  0.816  C13 XJB 7  
XJB C5  C8  C 0 1 N N N N N N -6.653  3.837  15.556 0.413  1.106  0.557  C5  XJB 8  
XJB C2  C9  C 0 1 Y N N N N N -6.092  2.827  11.209 -3.889 2.517  0.996  C2  XJB 9  
XJB C6  C10 C 0 1 N N N N N N -6.766  5.293  15.936 1.437  1.498  -0.511 C6  XJB 10 
XJB C3  C11 C 0 1 Y N N N N N -6.378  4.035  11.896 -3.261 1.289  0.764  C3  XJB 11 
XJB C8  C12 C 0 1 Y N N N N N -7.719  7.860  16.650 3.537  2.024  -2.130 C8  XJB 12 
XJB C12 C13 C 0 1 Y N N N N N -9.962  7.126  16.055 5.082  1.132  -0.523 C12 XJB 13 
XJB C9  C14 C 0 1 Y N N N N N -8.211  9.108  16.981 4.588  2.312  -2.978 C9  XJB 14 
XJB C4  C15 C 0 1 N N N N N N -7.084  3.567  14.135 -0.992 1.474  0.075  C4  XJB 15 
XJB C1  C16 C 0 1 Y N N N N N -6.886  3.709  9.259  -5.857 1.651  0.152  C1  XJB 16 
XJB C10 C17 C 0 1 Y N N N N N -9.552  9.377  16.864 5.884  2.011  -2.602 C10 XJB 17 
XJB C11 C18 C 0 1 Y N N N N N -10.414 8.396  16.406 6.131  1.422  -1.375 C11 XJB 18 
XJB C15 C19 C 0 1 N N N N N N -13.288 5.115  15.547 5.454  -1.657 2.042  C15 XJB 19 
XJB C19 C20 C 0 1 Y N N N N N -6.936  8.116  13.320 -1.968 -2.867 0.628  C19 XJB 20 
XJB C22 C21 C 0 1 Y N N N N N -8.905  8.133  11.948 -3.107 -2.971 -1.490 C22 XJB 21 
XJB C23 C22 C 0 1 Y N N N N N -8.517  6.935  11.390 -3.681 -1.742 -1.245 C23 XJB 22 
XJB C7  C23 C 0 1 Y N N N N N -8.587  6.876  16.205 3.782  1.438  -0.897 C7  XJB 23 
XJB N1  N1  N 0 1 N N N N N N -7.175  3.576  7.959  -7.193 1.839  -0.165 N1  XJB 24 
XJB N2  N2  N 0 1 Y N N N N N -6.345  2.668  9.911  -5.173 2.655  0.682  N2  XJB 25 
XJB N3  N3  N 0 1 N N N N N N -5.528  1.792  11.877 -3.181 3.576  1.546  N3  XJB 26 
XJB N4  N4  N 0 1 Y N N N N N -7.175  4.886  9.844  -5.300 0.475  -0.083 N4  XJB 27 
XJB O1  O1  O 0 1 N N N N N N -6.120  4.150  13.238 -1.948 1.108  1.071  O1  XJB 28 
XJB O2  O2  O 0 1 N N N N N N -8.165  5.623  15.860 2.749  1.155  -0.060 O2  XJB 29 
XJB O3  O3  O 0 1 N N N N N N -12.895 4.236  14.757 5.751  -0.969 2.989  O3  XJB 30 
XJB O4  O4  O 0 1 N N N N N N -14.435 5.134  16.030 5.365  -2.989 2.182  O4  XJB 31 
XJB O5  O5  O 0 1 N N N N N N -8.371  9.902  13.527 -1.689 -4.750 -0.797 O5  XJB 32 
XJB H1  H1  H 0 1 N N N N N N -5.706  6.390  13.152 -2.316 -1.116 1.798  H1  XJB 33 
XJB H2  H2  H 0 1 N N N N N N -9.681  11.465 13.867 -1.725 -4.749 -2.863 H2  XJB 34 
XJB H3  H3  H 0 1 N N N N N N -9.722  10.757 12.217 -1.510 -6.343 -2.101 H3  XJB 35 
XJB H4  H4  H 0 1 N N N N N N -10.436 9.858  13.598 -3.103 -5.551 -2.073 H4  XJB 36 
XJB H5  H5  H 0 1 N N N N N N -12.365 6.293  17.072 4.166  -1.251 0.390  H5  XJB 37 
XJB H6  H6  H 0 1 N N N N N N -12.721 7.175  15.548 5.887  -1.411 -0.033 H6  XJB 38 
XJB H7  H7  H 0 1 N N N N N N -10.564 5.078  15.900 4.649  0.886  1.552  H7  XJB 39 
XJB H8  H8  H 0 1 N N N N N N -10.887 6.072  14.438 6.371  0.726  1.128  H8  XJB 40 
XJB H9  H9  H 0 1 N N N N N N -7.288  3.247  16.234 0.467  0.032  0.735  H9  XJB 41 
XJB H10 H10 H 0 1 N N N N N N -5.605  3.525  15.670 0.631  1.640  1.482  H10 XJB 42 
XJB H11 H11 H 0 1 N N N N N N -6.393  5.450  16.959 1.219  0.965  -1.436 H11 XJB 43 
XJB H12 H12 H 0 1 N N N N N N -6.189  5.915  15.236 1.383  2.572  -0.689 H12 XJB 44 
XJB H13 H13 H 0 1 N N N N N N -6.663  7.652  16.738 2.525  2.260  -2.425 H13 XJB 45 
XJB H14 H14 H 0 1 N N N N N N -7.538  9.875  17.333 4.398  2.772  -3.937 H14 XJB 46 
XJB H15 H15 H 0 1 N N N N N N -8.073  4.015  13.957 -1.046 2.547  -0.104 H15 XJB 47 
XJB H16 H16 H 0 1 N N N N N N -7.138  2.482  13.965 -1.210 0.940  -0.851 H16 XJB 48 
XJB H17 H17 H 0 1 N N N N N N -9.933  10.352 17.129 6.705  2.236  -3.266 H17 XJB 49 
XJB H18 H18 H 0 1 N N N N N N -11.467 8.621  16.318 7.143  1.184  -1.085 H18 XJB 50 
XJB H19 H19 H 0 1 N N N N N N -6.318  8.583  14.073 -1.297 -3.308 1.351  H19 XJB 51 
XJB H20 H20 H 0 1 N N N N N N -9.828  8.605  11.645 -3.327 -3.496 -2.408 H20 XJB 52 
XJB H21 H21 H 0 1 N N N N N N -9.163  6.442  10.679 -4.348 -1.302 -1.972 H21 XJB 53 
XJB H22 H22 H 0 1 N N N N N N -7.582  4.424  7.619  -7.706 1.113  -0.553 H22 XJB 54 
XJB H23 H23 H 0 1 N N N N N N -6.337  3.381  7.450  -7.615 2.697  0.002  H23 XJB 55 
XJB H24 H24 H 0 1 N N N N N N -5.384  1.028  11.248 -2.244 3.468  1.772  H24 XJB 56 
XJB H25 H25 H 0 1 N N N N N N -4.650  2.080  12.258 -3.623 4.425  1.704  H25 XJB 57 
XJB H26 H26 H 0 1 N N N N N N -14.930 4.392  15.702 5.547  -3.352 3.060  H26 XJB 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XJB N1  C1  SING N N 1  
XJB C1  N4  DOUB Y N 2  
XJB C1  N2  SING Y N 3  
XJB N4  C16 SING Y N 4  
XJB N2  C2  DOUB Y N 5  
XJB C16 C17 SING N N 6  
XJB C16 C3  DOUB Y N 7  
XJB C2  N3  SING N N 8  
XJB C2  C3  SING Y N 9  
XJB C23 C17 DOUB Y N 10 
XJB C23 C22 SING Y N 11 
XJB C17 C18 SING Y N 12 
XJB C3  O1  SING N N 13 
XJB C22 C20 DOUB Y N 14 
XJB C18 C19 DOUB Y N 15 
XJB C20 C19 SING Y N 16 
XJB C20 O5  SING N N 17 
XJB O1  C4  SING N N 18 
XJB C21 O5  SING N N 19 
XJB C4  C5  SING N N 20 
XJB O3  C15 DOUB N N 21 
XJB C13 C14 SING N N 22 
XJB C13 C12 SING N N 23 
XJB C15 C14 SING N N 24 
XJB C15 O4  SING N N 25 
XJB C5  C6  SING N N 26 
XJB O2  C6  SING N N 27 
XJB O2  C7  SING N N 28 
XJB C12 C7  DOUB Y N 29 
XJB C12 C11 SING Y N 30 
XJB C7  C8  SING Y N 31 
XJB C11 C10 DOUB Y N 32 
XJB C8  C9  DOUB Y N 33 
XJB C10 C9  SING Y N 34 
XJB C18 H1  SING N N 35 
XJB C21 H2  SING N N 36 
XJB C21 H3  SING N N 37 
XJB C21 H4  SING N N 38 
XJB C14 H5  SING N N 39 
XJB C14 H6  SING N N 40 
XJB C13 H7  SING N N 41 
XJB C13 H8  SING N N 42 
XJB C5  H9  SING N N 43 
XJB C5  H10 SING N N 44 
XJB C6  H11 SING N N 45 
XJB C6  H12 SING N N 46 
XJB C8  H13 SING N N 47 
XJB C9  H14 SING N N 48 
XJB C4  H15 SING N N 49 
XJB C4  H16 SING N N 50 
XJB C10 H17 SING N N 51 
XJB C11 H18 SING N N 52 
XJB C19 H19 SING N N 53 
XJB C22 H20 SING N N 54 
XJB C23 H21 SING N N 55 
XJB N1  H22 SING N N 56 
XJB N1  H23 SING N N 57 
XJB N3  H24 SING N N 58 
XJB N3  H25 SING N N 59 
XJB O4  H26 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XJB SMILES           ACDLabs              12.01 "Nc1nc(c2ccc(OC)cc2)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1"                                                                                                                              
XJB InChI            InChI                1.06  "InChI=1S/C23H26N4O5/c1-30-17-10-7-16(8-11-17)20-21(22(24)27-23(25)26-20)32-14-4-13-31-18-6-3-2-5-15(18)9-12-19(28)29/h2-3,5-8,10-11H,4,9,12-14H2,1H3,(H,28,29)(H4,24,25,26,27)" 
XJB InChIKey         InChI                1.06  SKEGPFYLZNDHJX-UHFFFAOYSA-N                                                                                                                                                      
XJB SMILES_CANONICAL CACTVS               3.385 "COc1ccc(cc1)c2nc(N)nc(N)c2OCCCOc3ccccc3CCC(O)=O"                                                                                                                                
XJB SMILES           CACTVS               3.385 "COc1ccc(cc1)c2nc(N)nc(N)c2OCCCOc3ccccc3CCC(O)=O"                                                                                                                                
XJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2c(c(nc(n2)N)N)OCCCOc3ccccc3CCC(=O)O"                                                                                                                              
XJB SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2c(c(nc(n2)N)N)OCCCOc3ccccc3CCC(=O)O"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XJB "SYSTEMATIC NAME" ACDLabs              12.01 "3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid"   
XJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-(4-methoxyphenyl)pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XJB "Create component" 2022-11-22 RCSB 
XJB "Initial release"  2023-12-13 RCSB 
# 
