data_3TC
#

_chem_comp.id                                   3TC
_chem_comp.name                                 "4-AMINO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H11 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(-)-L-2',3'-DIDEOXY-3'-THIACYTIDINE; LAMIVUDINE; EPIVIR"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-10-26
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       229.256
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3TC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2NOA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3TC  O1    O1    O  0  1  N  N  N  38.535  93.737  91.881   3.425  -1.680  -1.471  O1    3TC   1  
3TC  C1    C1    C  0  1  Y  N  N  37.369  93.344  92.016   3.448  -1.063  -0.405  C1    3TC   2  
3TC  N2    N2    N  0  1  Y  N  N  36.997  92.079  91.723   4.565  -0.324  -0.053  N2    3TC   3  
3TC  C3    C3    C  0  1  Y  N  N  35.720  91.690  91.851   4.609   0.337   1.074  C3    3TC   4  
3TC  N3    N3    N  0  1  N  N  N  35.372  90.401  91.543   5.727   1.065   1.405  N3    3TC   5  
3TC  C5    C5    C  0  1  Y  N  N  34.755  92.612  92.279   3.469   0.327   2.029  C5    3TC   6  
3TC  C7    C7    C  0  1  Y  N  N  35.161  93.930  92.592   2.405  -0.389   1.672  C7    3TC   7  
3TC  N1    N1    N  0  1  Y  N  N  36.430  94.293  92.443   2.360  -1.084   0.485  N1    3TC   8  
3TC  C4    C4    C  0  1  N  N  S  36.937  95.645  92.746   1.169  -1.828   0.188  C4    3TC   9  
3TC  C6    C6    C  0  1  N  N  N  37.782  95.615  94.046   0.127  -0.964  -0.505  C6    3TC  10  
3TC  O2    O2    O  0  1  N  N  N  35.809  96.487  92.869   0.604  -2.304   1.415  O2    3TC  11  
3TC  C2    C2    C  0  1  N  N  R  35.764  97.230  94.096  -0.707  -2.810   1.130  C2    3TC  12  
3TC  S1    S1    S  0  1  N  N  N  36.683  96.260  95.241  -1.385  -1.918  -0.295  S1    3TC  13  
3TC  C8    C8    C  0  1  N  N  N  34.321  97.426  94.509  -1.578  -2.629   2.360  C8    3TC  14  
3TC  O3    O3    O  0  1  N  N  N  33.814  98.213  93.445  -1.637  -1.249   2.681  O3    3TC  15  
3TC  HN31  1HN3  H  0  0  N  N  N  36.180  89.893  91.244   6.259   0.773   2.190  HN31  3TC  16  
3TC  HN32  2HN3  H  0  0  N  N  N  34.448  90.024  91.608   5.954   1.851   0.846  HN32  3TC  17  
3TC  H5    H5    H  0  1  N  N  N  33.719  92.321  92.368   3.525   0.881   2.956  H5    3TC  18  
3TC  H7    H7    H  0  1  N  N  N  34.436  94.644  92.954   1.530  -0.450   2.309  H7    3TC  19  
3TC  H4    H4    H  0  1  N  N  N  37.597  96.021  91.950   1.468  -2.686  -0.427  H4    3TC  20  
3TC  H61   1H6   H  0  1  N  N  N  38.104  94.594  94.298   0.000   0.000  -0.000  H61   3TC  21  
3TC  H62   2H6   H  0  1  N  N  N  38.718  96.188  93.966   0.363  -0.783  -1.557  H62   3TC  22  
3TC  H2    H2    H  0  1  N  N  N  36.194  98.240  94.022  -0.623  -3.873   0.885  H2    3TC  23  
3TC  H81   1H8   H  0  1  N  N  N  34.235  97.938  95.479  -1.156  -3.173   3.208  H81   3TC  24  
3TC  H82   2H8   H  0  1  N  N  N  33.774  96.484  94.659  -2.591  -2.992   2.165  H82   3TC  25  
3TC  HO3   HO3   H  0  1  N  N  N  33.701  99.109  93.739  -0.766  -0.872   2.474  HO3   3TC  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3TC  O1  C1    DOUB  N  N   1  
3TC  C1  N2    SING  Y  N   2  
3TC  C1  N1    SING  Y  N   3  
3TC  N2  C3    DOUB  Y  N   4  
3TC  C3  N3    SING  N  N   5  
3TC  C3  C5    SING  Y  N   6  
3TC  N3  HN31  SING  N  N   7  
3TC  N3  HN32  SING  N  N   8  
3TC  C5  C7    DOUB  Y  N   9  
3TC  C5  H5    SING  N  N  10  
3TC  C7  N1    SING  Y  N  11  
3TC  C7  H7    SING  N  N  12  
3TC  N1  C4    SING  N  N  13  
3TC  C4  O2    SING  N  N  14  
3TC  C4  C6    SING  N  N  15  
3TC  C4  H4    SING  N  N  16  
3TC  C6  S1    SING  N  N  17  
3TC  C6  H61   SING  N  N  18  
3TC  C6  H62   SING  N  N  19  
3TC  O2  C2    SING  N  N  20  
3TC  C2  C8    SING  N  N  21  
3TC  C2  S1    SING  N  N  22  
3TC  C2  H2    SING  N  N  23  
3TC  C8  O3    SING  N  N  24  
3TC  C8  H81   SING  N  N  25  
3TC  C8  H82   SING  N  N  26  
3TC  O3  HO3   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3TC  SMILES            ACDLabs               10.04  "O=C1N=C(N)C=CN1C2OC(SC2)CO"  
3TC  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO)O2"  
3TC  SMILES            CACTVS                3.341  "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO)O2"  
3TC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H](O[C@H](S1)CO)N2C=CC(=NC2=O)N"  
3TC  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(OC(S1)CO)N2C=CC(=NC2=O)N"  
3TC  InChI             InChI                 1.03   "InChI=1S/C8H11N3O3S/c9-5-1-2-11(8(13)10-5)6-4-15-7(3-12)14-6/h1-2,6-7,12H,3-4H2,(H2,9,10,13)/t6-,7+/m0/s1"  
3TC  InChIKey          InChI                 1.03   JTEGQNOMFQHVDC-NKWVEPMBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3TC  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-amino-1-[(2R,5S)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]pyrimidin-2(1H)-one"  
3TC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "4-amino-1-[(2R,5S)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]pyrimidin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3TC  "Create component"   2006-10-26  RCSB  
3TC  "Modify descriptor"  2011-06-04  RCSB  
3TC  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  3TC  "(-)-L-2',3'-DIDEOXY-3'-THIACYTIDINE"  ?  ?  
2  3TC  LAMIVUDINE                             ?  ?  
3  3TC  EPIVIR                                 ?  ?  
##
