data_6VC
# 
_chem_comp.id                                    6VC 
_chem_comp.name                                  "~{N}-[(2~{S})-1-[[(2~{S},3~{R},4~{S})-2,6-dimethyl-1,2,3-tris(oxidanyl)heptan-4-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-6-methyl-heptanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H40 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Dihydroeponemycin bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        404.541 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6VC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LF1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6VC C5  C1  C 0 1 N N N N N N 61.750 203.795 43.659 -3.626  -0.026 -0.408 C5   6VC 1  
6VC C6  C2  C 0 1 N N N N N N 62.823 203.204 42.797 -4.873  -0.091 0.477  C6   6VC 2  
6VC C8  C3  C 0 1 N N N N N N 61.869 205.303 43.613 -2.396  -0.195 0.445  C8   6VC 3  
6VC O2  O1  O 0 1 N N N N N N 61.515 205.854 42.545 -2.505  -0.352 1.642  O2   6VC 4  
6VC N2  N1  N 0 1 N N N N N N 62.246 205.938 44.743 -1.174  -0.172 -0.124 N2   6VC 5  
6VC C9  C4  C 0 1 N N S N N N 62.366 207.390 44.854 0.023   -0.336 0.706  C9   6VC 6  
6VC C10 C5  C 0 1 N N N N N N 61.617 208.049 46.024 0.305   -1.827 0.904  C10  6VC 7  
6VC O3  O2  O 0 1 N N N N N N 60.390 207.320 46.022 0.632   -2.421 -0.353 O3   6VC 8  
6VC C12 C6  C 0 1 N N N N N N 63.777 207.857 45.018 1.200   0.311  0.023  C12  6VC 9  
6VC O4  O3  O 0 1 N N N N N N 64.610 207.088 45.477 1.054   0.856  -1.051 O4   6VC 10 
6VC N3  N2  N 0 1 N N N N N N 63.959 209.132 44.672 2.415   0.285  0.605  N3   6VC 11 
6VC C13 C7  C 0 1 N N S N N N 65.233 209.792 44.722 3.559   0.914  -0.059 C13  6VC 12 
6VC C21 C8  C 0 1 N N R N N N 65.130 210.996 45.663 4.854   0.254  0.421  C211 6VC 13 
6VC C22 C9  C 0 1 N N S N N N 64.724 210.685 47.148 4.846   -1.226 0.032  C22  6VC 14 
6VC C23 C10 C 0 1 N N N N N N 64.920 211.943 48.082 6.194   -1.855 0.391  C23  6VC 15 
6VC O6  O4  O 0 1 N N N N N N 63.327 210.353 47.225 3.803   -1.899 0.741  O6   6VC 16 
6VC C24 C11 C 0 1 N N N N N N 65.450 209.464 47.755 4.607   -1.357 -1.473 C24  6VC 17 
6VC O5  O5  O 0 1 N N N N N N 64.145 211.861 45.077 4.951   0.373  1.841  O5   6VC 18 
6VC C14 C12 C 0 1 N N N N N N 65.672 210.184 43.292 3.591   2.405  0.282  C14  6VC 19 
6VC C15 C13 C 0 1 N N N N N N 65.771 209.000 42.324 2.355   3.089  -0.306 C15  6VC 20 
6VC C16 C14 C 0 1 N N N N N N 66.072 209.530 40.919 2.321   4.552  0.139  C16  6VC 21 
6VC C20 C15 C 0 1 N N N N N N 66.836 208.025 42.763 2.414   3.022  -1.834 C20  6VC 22 
6VC C1  C16 C 0 1 N N N N N N 64.089 203.103 43.641 -6.123  0.080  -0.389 C1   6VC 23 
6VC C2  C17 C 0 1 N N N N N N 64.804 201.773 43.445 -7.369  0.015  0.495  C2   6VC 24 
6VC C3  C18 C 0 1 N N N N N N 65.937 201.701 42.417 -8.619  0.187  -0.370 C3   6VC 25 
6VC C4  C19 C 0 1 N N N N N N 66.225 203.076 41.762 -8.741  -0.999 -1.330 C4   6VC 26 
6VC C7  C20 C 0 1 N N N N N N 65.635 200.657 41.327 -9.857  0.247  0.527  C7   6VC 27 
6VC O8  O6  O 0 1 N N N N N N 64.917 209.151 49.058 4.599   -2.739 -1.836 O8   6VC 28 
6VC H1  H1  H 0 1 N N N N N N 60.762 203.490 43.283 -3.666  -0.823 -1.151 H1   6VC 29 
6VC H2  H2  H 0 1 N N N N N N 61.872 203.445 44.695 -3.589  0.939  -0.913 H2   6VC 30 
6VC H3  H3  H 0 1 N N N N N N 63.003 203.851 41.926 -4.910  -1.056 0.981  H3   6VC 31 
6VC H4  H4  H 0 1 N N N N N N 62.520 202.204 42.454 -4.833  0.706  1.219  H4   6VC 32 
6VC H5  H5  H 0 1 N N N N N N 62.455 205.384 45.549 -1.087  -0.046 -1.082 H5   6VC 33 
6VC H6  H6  H 0 1 N N N N N N 61.974 207.835 43.928 -0.139  0.136  1.675  H6   6VC 34 
6VC H7  H7  H 0 1 N N N N N N 62.160 207.920 46.972 1.141   -1.949 1.593  H7   6VC 35 
6VC H8  H8  H 0 1 N N N N N N 61.448 209.120 45.841 -0.580  -2.312 1.317  H8   6VC 36 
6VC H9  H9  H 0 1 N N N N N N 59.828 207.642 46.717 0.823   -3.368 -0.303 H9   6VC 37 
6VC H10 H10 H 0 1 N N N N N N 63.166 209.656 44.361 2.532   -0.151 1.464  H10  6VC 38 
6VC H11 H11 H 0 1 N N N N N N 65.986 209.102 45.130 3.467   0.790  -1.138 H11  6VC 39 
6VC H12 H12 H 0 1 N N N N N N 66.105 211.506 45.680 5.707   0.747  -0.045 H12  6VC 40 
6VC H13 H13 H 0 1 N N N N N N 64.626 211.686 49.110 6.398   -1.696 1.450  H13  6VC 41 
6VC H14 H14 H 0 1 N N N N N N 65.977 212.249 48.068 6.163   -2.924 0.183  H14  6VC 42 
6VC H15 H15 H 0 1 N N N N N N 64.294 212.771 47.718 6.981   -1.391 -0.204 H15  6VC 43 
6VC H16 H16 H 0 1 N N N N N N 63.094 210.167 48.127 2.912   -1.659 0.451  H16  6VC 44 
6VC H17 H17 H 0 1 N N N N N N 65.315 208.597 47.092 3.646   -0.909 -1.729 H17  6VC 45 
6VC H18 H18 H 0 1 N N N N N N 66.522 209.691 47.848 5.402   -0.844 -2.014 H18  6VC 46 
6VC H19 H19 H 0 1 N N N N N N 64.036 212.632 45.621 4.223   -0.044 2.322  H19  6VC 47 
6VC H20 H20 H 0 1 N N N N N N 66.660 210.665 43.353 3.594   2.530  1.365  H20  6VC 48 
6VC H21 H21 H 0 1 N N N N N N 64.940 210.900 42.889 4.490   2.855  -0.138 H21  6VC 49 
6VC H22 H22 H 0 1 N N N N N N 64.801 208.482 42.303 1.457   2.581  0.045  H22  6VC 50 
6VC H23 H23 H 0 1 N N N N N N 65.286 210.238 40.617 1.441   5.039  -0.280 H23  6VC 51 
6VC H24 H24 H 0 1 N N N N N N 67.045 210.042 40.921 2.279   4.600  1.227  H24  6VC 52 
6VC H25 H25 H 0 1 N N N N N N 66.101 208.690 40.209 3.219   5.060  -0.212 H25  6VC 53 
6VC H26 H26 H 0 1 N N N N N N 66.602 207.656 43.773 2.438   1.980  -2.151 H26  6VC 54 
6VC H27 H27 H 0 1 N N N N N N 66.869 207.178 42.062 1.534   3.509  -2.253 H27  6VC 55 
6VC H28 H28 H 0 1 N N N N N N 67.813 208.530 42.774 3.312   3.530  -2.185 H28  6VC 56 
6VC H29 H29 H 0 1 N N N N N N 64.771 203.918 43.356 -6.085  1.046  -0.894 H29  6VC 57 
6VC H30 H30 H 0 1 N N N N N N 63.817 203.206 44.702 -6.162  -0.716 -1.132 H30  6VC 58 
6VC H31 H31 H 0 1 N N N N N N 64.044 201.036 43.144 -7.406  -0.950 1.000  H31  6VC 59 
6VC H32 H32 H 0 1 N N N N N N 65.229 201.485 44.418 -7.330  0.812  1.238  H32  6VC 60 
6VC H33 H33 H 0 1 N N N N N N 66.850 201.384 42.942 -8.540  1.111  -0.943 H33  6VC 61 
6VC H34 H34 H 0 1 N N N N N N 66.440 203.818 42.545 -9.632  -0.876 -1.947 H34  6VC 62 
6VC H35 H35 H 0 1 N N N N N N 67.093 202.988 41.092 -7.859  -1.041 -1.969 H35  6VC 63 
6VC H36 H36 H 0 1 N N N N N N 65.346 203.398 41.184 -8.820  -1.923 -0.757 H36  6VC 64 
6VC H37 H37 H 0 1 N N N N N N 65.431 199.684 41.797 -9.769  1.092  1.210  H37  6VC 65 
6VC H38 H38 H 0 1 N N N N N N 64.756 200.975 40.748 -10.747 0.369  -0.090 H38  6VC 66 
6VC H39 H39 H 0 1 N N N N N N 66.502 200.566 40.656 -9.936  -0.677 1.099  H39  6VC 67 
6VC H40 H40 H 0 1 N N N N N N 65.374 208.399 49.415 4.452   -2.898 -2.779 H40  6VC 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6VC C16 C15 SING N N 1  
6VC C7  C3  SING N N 2  
6VC C4  C3  SING N N 3  
6VC C15 C20 SING N N 4  
6VC C15 C14 SING N N 5  
6VC C3  C2  SING N N 6  
6VC O2  C8  DOUB N N 7  
6VC C6  C1  SING N N 8  
6VC C6  C5  SING N N 9  
6VC C14 C13 SING N N 10 
6VC C2  C1  SING N N 11 
6VC C8  C5  SING N N 12 
6VC C8  N2  SING N N 13 
6VC N3  C13 SING N N 14 
6VC N3  C12 SING N N 15 
6VC C13 C21 SING N N 16 
6VC N2  C9  SING N N 17 
6VC C9  C12 SING N N 18 
6VC C9  C10 SING N N 19 
6VC C12 O4  DOUB N N 20 
6VC O5  C21 SING N N 21 
6VC C21 C22 SING N N 22 
6VC O3  C10 SING N N 23 
6VC C22 O6  SING N N 24 
6VC C22 C24 SING N N 25 
6VC C22 C23 SING N N 26 
6VC C24 O8  SING N N 27 
6VC C5  H1  SING N N 28 
6VC C5  H2  SING N N 29 
6VC C6  H3  SING N N 30 
6VC C6  H4  SING N N 31 
6VC N2  H5  SING N N 32 
6VC C9  H6  SING N N 33 
6VC C10 H7  SING N N 34 
6VC C10 H8  SING N N 35 
6VC O3  H9  SING N N 36 
6VC N3  H10 SING N N 37 
6VC C13 H11 SING N N 38 
6VC C21 H12 SING N N 39 
6VC C23 H13 SING N N 40 
6VC C23 H14 SING N N 41 
6VC C23 H15 SING N N 42 
6VC O6  H16 SING N N 43 
6VC C24 H17 SING N N 44 
6VC C24 H18 SING N N 45 
6VC O5  H19 SING N N 46 
6VC C14 H20 SING N N 47 
6VC C14 H21 SING N N 48 
6VC C15 H22 SING N N 49 
6VC C16 H23 SING N N 50 
6VC C16 H24 SING N N 51 
6VC C16 H25 SING N N 52 
6VC C20 H26 SING N N 53 
6VC C20 H27 SING N N 54 
6VC C20 H28 SING N N 55 
6VC C1  H29 SING N N 56 
6VC C1  H30 SING N N 57 
6VC C2  H31 SING N N 58 
6VC C2  H32 SING N N 59 
6VC C3  H33 SING N N 60 
6VC C4  H34 SING N N 61 
6VC C4  H35 SING N N 62 
6VC C4  H36 SING N N 63 
6VC C7  H37 SING N N 64 
6VC C7  H38 SING N N 65 
6VC C7  H39 SING N N 66 
6VC O8  H40 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6VC InChI            InChI                1.03  "InChI=1S/C20H40N2O6/c1-13(2)8-6-7-9-17(25)21-16(11-23)19(27)22-15(10-14(3)4)18(26)20(5,28)12-24/h13-16,18,23-24,26,28H,6-12H2,1-5H3,(H,21,25)(H,22,27)/t15-,16-,18+,20-/m0/s1" 
6VC InChIKey         InChI                1.03  FMSNRWQINDLCNQ-YTXYEVPYSA-N                                                                                                                                                     
6VC SMILES_CANONICAL CACTVS               3.385 "CC(C)CCCCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)[C@@H](O)[C@@](C)(O)CO"                                                                                                           
6VC SMILES           CACTVS               3.385 "CC(C)CCCCC(=O)N[CH](CO)C(=O)N[CH](CC(C)C)[CH](O)[C](C)(O)CO"                                                                                                                   
6VC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(C)CCCCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)[C@H]([C@](C)(CO)O)O"                                                                                                             
6VC SMILES           "OpenEye OEToolkits" 2.0.5 "CC(C)CCCCC(=O)NC(CO)C(=O)NC(CC(C)C)C(C(C)(CO)O)O"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           6VC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-1-[[(2~{S},3~{R},4~{S})-2,6-dimethyl-1,2,3-tris(oxidanyl)heptan-4-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-6-methyl-heptanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6VC "Create component" 2016-07-05 EBI  
6VC "Initial release"  2016-08-17 RCSB 
6VC "Modify synonyms"  2021-03-01 PDBE 
6VC "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      6VC 
_pdbx_chem_comp_synonyms.name         "Dihydroeponemycin bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6VC 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
