data_8SC
# 
_chem_comp.id                                    8SC 
_chem_comp.name                                  "3'3'-c-(2'F,2'dA-isonucA)MP" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 F N10 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "9-[(1R,6R,9R,10S,15R,17R,18R)-17-(6-aminopurin-9-yl)-18-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-9-yl]purin-6-amine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-29 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        644.404 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8SC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Q3B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8SC N   N1  N 0 1 Y N N -13.617 20.034 -8.502  -7.422 -3.544 -0.083 N   8SC 1  
8SC C17 C1  C 0 1 N N R -22.618 17.721 -10.384 4.499  0.515  0.436  C17 8SC 2  
8SC C14 C2  C 0 1 Y N N -20.408 17.875 -11.050 5.127  -1.893 0.856  C14 8SC 3  
8SC C13 C3  C 0 1 Y N N -19.157 14.642 -9.895  8.350  -2.334 -0.588 C13 8SC 4  
8SC C12 C4  C 0 1 Y N N -19.756 15.785 -10.265 7.086  -2.007 -0.068 C12 8SC 5  
8SC C11 C5  C 0 1 Y N N -21.084 16.006 -10.012 6.620  -0.692 -0.237 C11 8SC 6  
8SC C16 C6  C 0 1 N N R -22.806 18.107 -8.979  3.659  0.621  -0.846 C16 8SC 7  
8SC C15 C7  C 0 1 N N R -22.503 19.539 -8.933  2.216  0.844  -0.361 C15 8SC 8  
8SC N7  N2  N 0 1 Y N N -19.284 17.076 -10.978 6.128  -2.687 0.606  N7  8SC 9  
8SC C8  C8  C 0 1 N N R -20.121 23.297 -7.605  -3.064 2.509  0.068  C8  8SC 10 
8SC N9  N3  N 0 1 N N N -17.781 14.443 -10.165 8.862  -3.613 -0.452 N9  8SC 11 
8SC C1  C9  C 0 1 Y N N -16.180 21.067 -8.274  -6.058 -1.211 -0.038 C1  8SC 12 
8SC O1  O1  O 0 1 N N N -19.102 23.519 -6.522  -4.344 3.091  -0.195 O1  8SC 13 
8SC C4  C10 C 0 1 Y N N -18.091 20.338 -7.411  -5.403 0.086  -1.696 C4  8SC 14 
8SC C5  C11 C 0 1 N N S -19.483 22.507 -8.646  -3.285 1.017  0.362  C5  8SC 15 
8SC P   P1  P 0 1 N N N -22.281 20.295 -6.460  0.362  2.765  -0.271 P   8SC 16 
8SC O8  O2  O 0 1 N N N -21.008 20.971 -11.030 -0.002 0.166  1.052  O8  8SC 17 
8SC O7  O3  O 0 1 N N N -23.159 20.134 -7.801  1.716  2.098  -0.832 O7  8SC 18 
8SC C3  C12 C 0 1 Y N N -14.609 19.298 -7.886  -7.162 -2.976 -1.255 C3  8SC 19 
8SC O3  O4  O 0 1 N N N -21.730 18.966 -6.121  0.327  4.197  -0.643 O3  8SC 20 
8SC C2  C13 C 0 1 Y N N -15.871 19.810 -7.775  -6.455 -1.761 -1.269 C2  8SC 21 
8SC O2  O5  O 0 1 N N N -21.076 21.331 -6.520  -0.910 2.013  -0.910 O2  8SC 22 
8SC C6  C14 C 0 1 N N R -18.059 22.521 -8.436  -4.798 0.883  0.620  C6  8SC 23 
8SC N1  N4  N 0 1 Y N N -15.221 21.802 -8.877  -6.364 -1.853 1.085  N1  8SC 24 
8SC C9  C15 C 0 1 N N N -21.344 22.663 -7.013  -2.158 2.665  -1.154 C9  8SC 25 
8SC C   C16 C 0 1 Y N N -13.904 21.304 -9.006  -7.029 -2.989 1.049  C   8SC 26 
8SC O   O6  O 0 1 N N N -23.210 20.689 -5.361  0.320  2.626  1.332  O   8SC 27 
8SC C10 C17 C 0 1 Y N N -21.239 13.862 -8.987  8.562  -0.165 -1.347 C10 8SC 28 
8SC C18 C18 C 0 1 N N R -23.025 20.059 -10.193 2.306  0.851  1.172  C18 8SC 29 
8SC C19 C19 C 0 1 N N N -22.308 21.291 -10.597 1.223  -0.061 1.753  C19 8SC 30 
8SC C7  C20 C 0 1 N N N -17.783 23.567 -7.375  -5.363 2.298  0.419  C7  8SC 31 
8SC F6  F1  F 0 1 N N N -24.104 17.899 -8.604  4.086  1.706  -1.619 F6  8SC 32 
8SC N11 N5  N 0 1 N N N -14.343 18.011 -7.368  -7.578 -3.566 -2.436 N11 8SC 33 
8SC N2  N6  N 0 1 Y N N -17.442 21.238 -8.013  -5.398 -0.047 -0.340 N2  8SC 34 
8SC N3  N7  N 0 1 Y N N -17.201 19.310 -7.183  -6.024 -0.921 -2.240 N3  8SC 35 
8SC N4  N8  N 0 1 Y N N -19.876 13.671 -9.255  9.042  -1.388 -1.212 N4  8SC 36 
8SC N5  N9  N 0 1 Y N N -21.823 15.064 -9.387  7.384  0.187  -0.877 N5  8SC 37 
8SC N6  N10 N 0 1 Y N N -21.314 17.197 -10.505 5.383  -0.650 0.356  N6  8SC 38 
8SC O10 O7  O 0 1 N N N -19.731 23.137 -9.968  -2.548 0.623  1.520  O10 8SC 39 
8SC O22 O8  O 0 1 N N N -18.654 21.478 -11.531 -1.799 -1.648 0.425  O22 8SC 40 
8SC O4  O9  O 0 1 N N N -20.350 22.932 -12.420 -1.260 -1.108 2.831  O4  8SC 41 
8SC O5  O10 O 0 1 N N N -22.820 18.958 -11.167 3.598  0.365  1.534  O5  8SC 42 
8SC P1  P2  P 0 1 N N N -19.964 22.122 -11.231 -1.399 -0.505 1.487  P1  8SC 43 
8SC H1  H1  H 0 1 N N N -23.369 16.971 -10.671 5.092  1.420  0.565  H1  8SC 44 
8SC H2  H2  H 0 1 N N N -20.490 18.863 -11.479 4.226  -2.177 1.378  H2  8SC 45 
8SC H3  H3  H 0 1 N N N -22.105 17.551 -8.338  3.727  -0.303 -1.421 H3  8SC 46 
8SC H4  H4  H 0 1 N N N -21.416 19.696 -8.877  1.574  0.032  -0.701 H4  8SC 47 
8SC H5  H5  H 0 1 N N N -20.404 24.276 -8.021  -2.609 2.993  0.932  H5  8SC 48 
8SC H6  H6  H 0 1 N N N -17.500 13.546 -9.823  9.736  -3.826 -0.814 H6  8SC 49 
8SC H7  H7  H 0 1 N N N -17.625 14.487 -11.152 8.347  -4.295 0.006  H7  8SC 50 
8SC H8  H8  H 0 1 N N N -19.134 20.367 -7.131  -4.958 0.906  -2.240 H8  8SC 51 
8SC H9  H9  H 0 1 N N N -19.868 21.477 -8.640  -2.994 0.414  -0.497 H9  8SC 52 
8SC H10 H10 H 0 1 N N N -17.568 22.847 -9.365  -4.979 0.543  1.640  H10 8SC 53 
8SC H11 H11 H 0 1 N N N -21.699 23.286 -6.179  -2.639 2.215  -2.023 H11 8SC 54 
8SC H12 H12 H 0 1 N N N -22.124 22.606 -7.786  -1.983 3.724  -1.344 H12 8SC 55 
8SC H13 H13 H 0 1 N N N -13.136 21.894 -9.484  -7.261 -3.484 1.980  H13 8SC 56 
8SC H14 H14 H 0 1 N N N -23.233 20.003 -4.704  -0.470 3.008  1.740  H14 8SC 57 
8SC H15 H15 H 0 1 N N N -21.819 13.101 -8.486  9.158  0.574  -1.862 H15 8SC 58 
8SC H16 H16 H 0 1 N N N -24.100 20.271 -10.096 2.173  1.867  1.543  H16 8SC 59 
8SC H17 H17 H 0 1 N N N -22.248 21.976 -9.738  1.085  0.165  2.811  H17 8SC 60 
8SC H18 H18 H 0 1 N N N -22.855 21.779 -11.417 1.522  -1.102 1.637  H18 8SC 61 
8SC H19 H19 H 0 1 N N N -16.905 23.300 -6.769  -5.635 2.727  1.383  H19 8SC 62 
8SC H20 H20 H 0 1 N N N -17.632 24.560 -7.822  -6.239 2.257  -0.228 H20 8SC 63 
8SC H21 H21 H 0 1 N N N -13.384 17.778 -7.529  -8.066 -4.404 -2.414 H21 8SC 64 
8SC H22 H22 H 0 1 N N N -14.528 18.003 -6.385  -7.383 -3.141 -3.286 H22 8SC 65 
8SC H23 H23 H 0 1 N N N -18.369 21.729 -12.402 -1.151 -2.361 0.352  H23 8SC 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8SC O4  P1  DOUB N N 1  
8SC O22 P1  SING N N 2  
8SC P1  O8  SING N N 3  
8SC P1  O10 SING N N 4  
8SC O5  C17 SING N N 5  
8SC O5  C18 SING N N 6  
8SC C14 N7  DOUB Y N 7  
8SC C14 N6  SING Y N 8  
8SC O8  C19 SING N N 9  
8SC N7  C12 SING Y N 10 
8SC C19 C18 SING N N 11 
8SC N6  C17 SING N N 12 
8SC N6  C11 SING Y N 13 
8SC C17 C16 SING N N 14 
8SC C12 C11 DOUB Y N 15 
8SC C12 C13 SING Y N 16 
8SC C18 C15 SING N N 17 
8SC N9  C13 SING N N 18 
8SC C11 N5  SING Y N 19 
8SC O10 C5  SING N N 20 
8SC C13 N4  DOUB Y N 21 
8SC N5  C10 DOUB Y N 22 
8SC N4  C10 SING Y N 23 
8SC C   N1  DOUB Y N 24 
8SC C   N   SING Y N 25 
8SC C16 C15 SING N N 26 
8SC C16 F6  SING N N 27 
8SC C15 O7  SING N N 28 
8SC N1  C1  SING Y N 29 
8SC C5  C6  SING N N 30 
8SC C5  C8  SING N N 31 
8SC N   C3  DOUB Y N 32 
8SC C6  N2  SING N N 33 
8SC C6  C7  SING N N 34 
8SC C1  N2  SING Y N 35 
8SC C1  C2  DOUB Y N 36 
8SC N2  C4  SING Y N 37 
8SC C3  C2  SING Y N 38 
8SC C3  N11 SING N N 39 
8SC O7  P   SING N N 40 
8SC C2  N3  SING Y N 41 
8SC C8  C9  SING N N 42 
8SC C8  O1  SING N N 43 
8SC C4  N3  DOUB Y N 44 
8SC C7  O1  SING N N 45 
8SC C9  O2  SING N N 46 
8SC O2  P   SING N N 47 
8SC P   O3  DOUB N N 48 
8SC P   O   SING N N 49 
8SC C17 H1  SING N N 50 
8SC C14 H2  SING N N 51 
8SC C16 H3  SING N N 52 
8SC C15 H4  SING N N 53 
8SC C8  H5  SING N N 54 
8SC N9  H6  SING N N 55 
8SC N9  H7  SING N N 56 
8SC C4  H8  SING N N 57 
8SC C5  H9  SING N N 58 
8SC C6  H10 SING N N 59 
8SC C9  H11 SING N N 60 
8SC C9  H12 SING N N 61 
8SC C   H13 SING N N 62 
8SC O   H14 SING N N 63 
8SC C10 H15 SING N N 64 
8SC C18 H16 SING N N 65 
8SC C19 H17 SING N N 66 
8SC C19 H18 SING N N 67 
8SC C7  H19 SING N N 68 
8SC C7  H20 SING N N 69 
8SC N11 H21 SING N N 70 
8SC N11 H22 SING N N 71 
8SC O22 H23 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8SC InChI            InChI                1.06  "InChI=1S/C20H23FN10O10P2/c21-11-15-10(39-20(11)31-7-29-13-17(23)25-5-27-19(13)31)3-38-42(32,33)40-14-8(1-36-9(14)2-37-43(34,35)41-15)30-6-28-12-16(22)24-4-26-18(12)30/h4-11,14-15,20H,1-3H2,(H,32,33)(H,34,35)(H2,22,24,26)(H2,23,25,27)/t8-,9-,10-,11-,14+,15-,20-/m1/s1" 
8SC InChIKey         InChI                1.06  AGXHTOKVTXUJHH-HZQZQDQHSA-N                                                                                                                                                                                                                                                  
8SC SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3CO[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]34)n6cnc7c(N)ncnc67"                                                                                                                                                          
8SC SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3CO[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]34)n6cnc7c(N)ncnc67"                                                                                                                                                                       
8SC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@@H]3CO[C@H]4[C@H]3OP(=O)(OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)F)OP(=O)(OC4)O)O)N"                                                                                                                                                             
8SC SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3COC4C3OP(=O)(OCC5C(C(C(O5)n6cnc7c6ncnc7N)F)OP(=O)(OC4)O)O)N"                                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           8SC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "9-[(1~{R},6~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-18-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-9-yl]purin-6-amine" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      8SC 
_pdbx_chem_comp_synonyms.name         "9-[(1R,6R,9R,10S,15R,17R,18R)-17-(6-aminopurin-9-yl)-18-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-9-yl]purin-6-amine" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8SC "Create component"  2021-10-29 PDBE 
8SC "Initial release"   2022-06-15 RCSB 
8SC "Modify descriptor" 2022-08-22 RCSB 
# 
