data_DOC
# 
_chem_comp.id                                    DOC 
_chem_comp.name                                  "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N3 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        291.198 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     DOC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DOC N1     N1   N 0 1 N N N 8.490  10.822 13.131 -0.507 -0.477 2.493  N1     DOC 1  
DOC C2     C2   C 0 1 N N N 8.700  11.245 11.790 0.222  0.652  2.523  C2     DOC 2  
DOC N3     N3   N 0 1 N N N 9.934  11.192 11.276 1.056  0.906  3.530  N3     DOC 3  
DOC C4     C4   C 0 1 N N N 10.943 10.754 11.996 1.189  0.047  4.532  C4     DOC 4  
DOC C5     C5   C 0 1 N N N 10.774 10.317 13.366 0.442  -1.148 4.529  C5     DOC 5  
DOC C6     C6   C 0 1 N N N 9.529  10.374 13.889 -0.405 -1.389 3.501  C6     DOC 6  
DOC O2     O2   O 0 1 N N N 7.733  11.660 11.105 0.118  1.458  1.613  O2     DOC 7  
DOC N4     N4   N 0 1 N N N 12.132 10.742 11.402 2.054  0.320  5.567  N4     DOC 8  
DOC "C1'"  C1*  C 0 1 N N R 7.127  10.913 13.695 -1.416 -0.728 1.372  "C1'"  DOC 9  
DOC "C2'"  C2*  C 0 1 N N N 6.194  9.715  13.665 -2.465 0.396  1.287  "C2'"  DOC 10 
DOC "C3'"  C3*  C 0 1 N N N 5.529  9.752  15.042 -2.274 0.987  -0.131 "C3'"  DOC 11 
DOC "C4'"  C4*  C 0 1 N N S 6.212  10.869 15.847 -1.556 -0.170 -0.870 "C4'"  DOC 12 
DOC "O4'"  O4*  O 0 1 N N N 7.193  11.471 14.986 -0.681 -0.726 0.137  "O4'"  DOC 13 
DOC "C5'"  C5*  C 0 1 N N N 6.923  10.400 17.091 -0.749 0.364  -2.054 "C5'"  DOC 14 
DOC "O5'"  O5*  O 0 1 N N N 8.063  9.641  16.758 -0.098 -0.721 -2.717 "O5'"  DOC 15 
DOC P      P    P 0 1 N N N 8.869  9.063  18.017 0.728  -0.088 -3.945 P      DOC 16 
DOC OP1    O1P  O 0 1 N N N 10.116 8.376  17.617 1.719  0.880  -3.426 OP1    DOC 17 
DOC OP2    O2P  O 0 1 N N N 7.882  8.443  18.915 1.490  -1.262 -4.741 OP2    DOC 18 
DOC OP3    O3P  O 0 1 N Y N 9.388  10.381 18.691 -0.286 0.664  -4.943 OP3    DOC 19 
DOC H5     H5   H 0 1 N N N 11.589 9.942  14.007 0.538  -1.857 5.338  H5     DOC 20 
DOC H6     H6   H 0 1 N N N 9.361  10.055 14.931 -0.991 -2.296 3.477  H6     DOC 21 
DOC HN41   1HN4 H 0 0 N N N 12.914 10.402 11.960 2.569  1.141  5.565  HN41   DOC 22 
DOC HN42   2HN4 H 0 0 N N N 12.345 11.671 11.041 2.145  -0.308 6.300  HN42   DOC 23 
DOC "H1'"  H1*  H 0 1 N N N 6.615  11.567 12.951 -1.913 -1.689 1.506  "H1'"  DOC 24 
DOC "H2'"  1H2* H 0 1 N N N 5.482  9.703  12.806 -3.471 -0.009 1.398  "H2'"  DOC 25 
DOC "H2''" 2H2* H 0 0 N N N 6.689  8.747  13.415 -2.274 1.156  2.045  "H2''" DOC 26 
DOC "H3'1" 1H3* H 0 0 N N N 4.421  9.866  14.988 -3.236 1.206  -0.594 "H3'1" DOC 27 
DOC "H3'2" 2H3* H 0 0 N N N 5.546  8.765  15.562 -1.646 1.877  -0.100 "H3'2" DOC 28 
DOC "H4'"  H4*  H 0 1 N N N 5.410  11.567 16.183 -2.276 -0.917 -1.204 "H4'"  DOC 29 
DOC "H5'"  1H5* H 0 1 N N N 7.175  11.249 17.767 -1.418 0.868  -2.752 "H5'"  DOC 30 
DOC "H5''" 2H5* H 0 0 N N N 6.239  9.841  17.771 -0.001 1.071  -1.694 "H5''" DOC 31 
DOC HOP2   2HOP H 0 0 N N N 8.359  8.100  19.661 1.972  -0.841 -5.466 HOP2   DOC 32 
DOC HOP3   3HOP H 0 0 N N N 9.865  10.038 19.437 -0.913 -0.000 -5.258 HOP3   DOC 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DOC N1    C2     SING N N 1  
DOC N1    C6     SING N N 2  
DOC N1    "C1'"  SING N N 3  
DOC C2    N3     SING N N 4  
DOC C2    O2     DOUB N N 5  
DOC N3    C4     DOUB N N 6  
DOC C4    C5     SING N N 7  
DOC C4    N4     SING N N 8  
DOC C5    C6     DOUB N N 9  
DOC C5    H5     SING N N 10 
DOC C6    H6     SING N N 11 
DOC N4    HN41   SING N N 12 
DOC N4    HN42   SING N N 13 
DOC "C1'" "C2'"  SING N N 14 
DOC "C1'" "O4'"  SING N N 15 
DOC "C1'" "H1'"  SING N N 16 
DOC "C2'" "C3'"  SING N N 17 
DOC "C2'" "H2'"  SING N N 18 
DOC "C2'" "H2''" SING N N 19 
DOC "C3'" "C4'"  SING N N 20 
DOC "C3'" "H3'1" SING N N 21 
DOC "C3'" "H3'2" SING N N 22 
DOC "C4'" "O4'"  SING N N 23 
DOC "C4'" "C5'"  SING N N 24 
DOC "C4'" "H4'"  SING N N 25 
DOC "C5'" "O5'"  SING N N 26 
DOC "C5'" "H5'"  SING N N 27 
DOC "C5'" "H5''" SING N N 28 
DOC "O5'" P      SING N N 29 
DOC P     OP1    DOUB N N 30 
DOC P     OP2    SING N N 31 
DOC P     OP3    SING N N 32 
DOC OP2   HOP2   SING N N 33 
DOC OP3   HOP3   SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DOC SMILES           ACDLabs              10.04 "O=C1N=C(N)C=CN1C2OC(CC2)COP(=O)(O)O"                                                                                                
DOC SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@H]2CC[C@@H](CO[P](O)(O)=O)O2"                                                                                   
DOC SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(O)=O)O2"                                                                                      
DOC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C[C@@H](O[C@@H]1COP(=O)(O)O)N2C=CC(=NC2=O)N"                                                                                      
DOC SMILES           "OpenEye OEToolkits" 1.5.0 "C1CC(OC1COP(=O)(O)O)N2C=CC(=NC2=O)N"                                                                                                
DOC InChI            InChI                1.03  "InChI=1S/C9H14N3O6P/c10-7-3-4-12(9(13)11-7)8-2-1-6(18-8)5-17-19(14,15)16/h3-4,6,8H,1-2,5H2,(H2,10,11,13)(H2,14,15,16)/t6-,8+/m0/s1" 
DOC InChIKey         InChI                1.03  RAJMXAZJKUGYGW-POYBYMJQSA-N                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DOC "SYSTEMATIC NAME" ACDLabs              10.04 "[(2S,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate" 
DOC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DOC "Create component"  1999-07-08 RCSB 
DOC "Modify descriptor" 2011-06-04 RCSB 
# 
