data_GRC
# 
_chem_comp.id                                    GRC 
_chem_comp.name                                  "5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 Cl N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-06-06 
_chem_comp.pdbx_modified_date                    2012-06-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.653 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GRC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DOB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GRC N1    N1    N  0 1 N N N 9.664  8.921  8.176  8.056  2.116  -0.342 N1    GRC 1  
GRC C2    C2    C  0 1 N N N 8.407  9.017  7.606  7.580  1.365  -1.375 C2    GRC 2  
GRC N2    N2    N  0 1 N N N 8.317  9.603  6.378  8.278  1.339  -2.556 N2    GRC 3  
GRC N3    N3    N  0 1 N N N 7.294  8.681  8.257  6.473  0.664  -1.272 N3    GRC 4  
GRC C4    C4    C  0 1 Y N N 7.531  8.200  9.476  5.760  0.659  -0.139 C4    GRC 5  
GRC C5    C5    C  0 1 Y N N 8.727  8.053  10.114 6.196  1.411  0.958  C5    GRC 6  
GRC C6    C6    C  0 1 N N N 9.903  8.442  9.458  7.389  2.161  0.833  C6    GRC 7  
GRC O6    O6    O  0 1 N N N 11.039 8.240  9.873  7.809  2.826  1.765  O6    GRC 8  
GRC N7    N7    N  0 1 Y N N 8.565  7.531  11.393 5.297  1.226  1.955  N7    GRC 9  
GRC C8    C8    C  0 1 Y N N 7.276  7.357  11.484 4.359  0.423  1.546  C8    GRC 10 
GRC N9    N9    N  0 1 Y N N 6.586  7.764  10.370 4.602  0.047  0.256  N9    GRC 11 
GRC PA    PA    P  0 1 N N N 5.011  5.234  14.665 -1.882 -1.681 0.734  PA    GRC 12 
GRC PB    PB    P  0 1 N N N 3.854  2.827  13.742 -4.462 -0.333 0.179  PB    GRC 13 
GRC PG    PG    P  0 1 N N N 3.942  1.355  16.480 -6.690 1.441  -0.689 PG    GRC 14 
GRC "C1'" "C1'" C  0 1 N N R 5.150  7.617  10.106 3.774  -0.849 -0.555 "C1'" GRC 15 
GRC O1A   O1A   O  0 1 N N N 3.978  5.115  15.738 -1.715 -1.458 2.320  O1A   GRC 16 
GRC O1B   O1B   O  0 1 N N N 3.822  2.324  12.341 -4.903 -0.199 1.586  O1B   GRC 17 
GRC O1G   O1G   O  0 1 N N N 3.442  2.722  16.878 -7.170 1.587  0.841  O1G   GRC 18 
GRC "C2'" "C2'" C  0 1 N N N 4.904  6.180  9.684  4.262  -2.308 -0.414 "C2'" GRC 19 
GRC O2A   O2A   O  0 1 N N N 6.442  5.336  15.077 -2.450 -3.024 0.481  O2A   GRC 20 
GRC O2B   O2B   O  0 1 N N N 2.534  3.154  14.294 -5.202 -1.593 -0.497 O2B   GRC 21 
GRC O2G   O2G   O  0 1 N N N 4.795  0.577  17.437 -7.065 2.781  -1.499 O2G   GRC 22 
GRC "C3'" "C3'" C  0 1 N N S 4.328  5.515  10.956 2.961  -3.141 -0.424 "C3'" GRC 23 
GRC "O3'" "O3'" O  0 1 N N N 3.457  4.391  10.645 2.951  -4.041 -1.534 "O3'" GRC 24 
GRC O3A   O3A   O  0 1 N N N 4.839  3.996  13.763 -2.869 -0.559 0.136  O3A   GRC 25 
GRC C3B   C3B   C  0 1 N N R 4.731  1.601  14.839 -4.886 1.185  -0.738 C3B   GRC 26 
GRC CL1   CL1   CL 0 0 N N N 4.781  -0.034 14.111 -4.058 2.596  0.019  CL1   GRC 27 
GRC O3G   O3G   O  0 1 N N N 2.784  0.460  16.288 -7.370 0.282  -1.310 O3G   GRC 28 
GRC "C4'" "C4'" C  0 1 N N R 3.590  6.691  11.606 1.842  -2.088 -0.570 "C4'" GRC 29 
GRC "O4'" "O4'" O  0 1 N N N 4.403  7.846  11.302 2.417  -0.864 -0.062 "O4'" GRC 30 
GRC "C5'" "C5'" C  0 1 N N N 3.417  6.637  13.101 0.622  -2.488 0.262  "C5'" GRC 31 
GRC "O5'" "O5'" O  0 1 N N N 4.716  6.429  13.652 -0.442 -1.564 0.023  "O5'" GRC 32 
GRC H1    H1    H  0 1 N N N 10.449 9.215  7.631  8.878  2.619  -0.449 H1    GRC 33 
GRC H2    H2    H  0 1 N N N 7.420  9.778  5.972  9.097  1.851  -2.647 H2    GRC 34 
GRC H3    H3    H  0 1 N N N 9.148  9.858  5.884  7.952  0.809  -3.300 H3    GRC 35 
GRC H4    H4    H  0 1 N N N 6.797  6.933  12.354 3.513  0.104  2.137  H4    GRC 36 
GRC H5    H5    H  0 1 N N N 4.833  8.300  9.304  3.795  -0.540 -1.600 H5    GRC 37 
GRC H6    H6    H  0 1 N N N 4.402  5.121  16.588 -1.347 -0.597 2.560  H6    GRC 38 
GRC H7    H7    H  0 1 N N N 2.493  2.713  16.919 -6.764 2.327  1.312  H7    GRC 39 
GRC H8    H8    H  0 1 N N N 4.181  6.133  8.856  4.898  -2.582 -1.256 H8    GRC 40 
GRC H9    H9    H  0 1 N N N 5.843  5.695  9.379  4.795  -2.443 0.527  H9    GRC 41 
GRC H10   H10   H  0 1 N N N 1.866  2.983  13.641 -4.960 -1.741 -1.421 H10   GRC 42 
GRC H11   H11   H  0 1 N N N 4.368  -0.246 17.646 -8.011 2.980  -1.514 H11   GRC 43 
GRC H12   H12   H  0 1 N N N 5.155  5.195  11.607 2.851  -3.688 0.513  H12   GRC 44 
GRC H13   H13   H  0 1 N N N 3.616  3.687  11.262 3.671  -4.686 -1.524 H13   GRC 45 
GRC H14   H14   H  0 1 N N N 5.761  1.955  14.996 -4.562 1.086  -1.774 H14   GRC 46 
GRC H15   H15   H  0 1 N N N 2.602  6.793  11.133 1.564  -1.972 -1.618 H15   GRC 47 
GRC H16   H16   H  0 1 N N N 2.995  7.584  13.469 0.302  -3.491 -0.021 H16   GRC 48 
GRC H17   H17   H  0 1 N N N 2.750  5.807  13.377 0.883  -2.474 1.320  H17   GRC 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GRC N2    C2    SING N N 1  
GRC C2    N1    SING N N 2  
GRC C2    N3    DOUB N N 3  
GRC N1    C6    SING N N 4  
GRC N3    C4    SING N N 5  
GRC C6    O6    DOUB N N 6  
GRC C6    C5    SING N N 7  
GRC C4    C5    DOUB Y N 8  
GRC C4    N9    SING Y N 9  
GRC "C2'" "C1'" SING N N 10 
GRC "C2'" "C3'" SING N N 11 
GRC "C1'" N9    SING N N 12 
GRC "C1'" "O4'" SING N N 13 
GRC C5    N7    SING Y N 14 
GRC N9    C8    SING Y N 15 
GRC "O3'" "C3'" SING N N 16 
GRC "C3'" "C4'" SING N N 17 
GRC "O4'" "C4'" SING N N 18 
GRC N7    C8    DOUB Y N 19 
GRC "C4'" "C5'" SING N N 20 
GRC O1B   PB    DOUB N N 21 
GRC "C5'" "O5'" SING N N 22 
GRC "O5'" PA    SING N N 23 
GRC PB    O3A   SING N N 24 
GRC PB    O2B   SING N N 25 
GRC PB    C3B   SING N N 26 
GRC O3A   PA    SING N N 27 
GRC CL1   C3B   SING N N 28 
GRC PA    O2A   DOUB N N 29 
GRC PA    O1A   SING N N 30 
GRC C3B   PG    SING N N 31 
GRC O3G   PG    DOUB N N 32 
GRC PG    O1G   SING N N 33 
GRC PG    O2G   SING N N 34 
GRC N1    H1    SING N N 35 
GRC N2    H2    SING N N 36 
GRC N2    H3    SING N N 37 
GRC C8    H4    SING N N 38 
GRC "C1'" H5    SING N N 39 
GRC O1A   H6    SING N N 40 
GRC O1G   H7    SING N N 41 
GRC "C2'" H8    SING N N 42 
GRC "C2'" H9    SING N N 43 
GRC O2B   H10   SING N N 44 
GRC O2G   H11   SING N N 45 
GRC "C3'" H12   SING N N 46 
GRC "O3'" H13   SING N N 47 
GRC C3B   H14   SING N N 48 
GRC "C4'" H15   SING N N 49 
GRC "C5'" H16   SING N N 50 
GRC "C5'" H17   SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GRC SMILES           ACDLabs              12.01 "O=P(O)(O)C(Cl)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" 
GRC InChI            InChI                1.03  
"InChI=1S/C11H17ClN5O12P3/c12-10(30(20,21)22)31(23,24)29-32(25,26)27-2-5-4(18)1-6(28-5)17-3-14-7-8(17)15-11(13)16-9(7)19/h3-6,10,18H,1-2H2,(H,23,24)(H,25,26)(H2,20,21,22)(H3,13,15,16,19)/t4-,5+,6+,10+/m0/s1" 
GRC InChIKey         InChI                1.03  GBPRSSRXOIDBNV-AVAJSQPUSA-N 
GRC SMILES_CANONICAL CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@H](Cl)[P](O)(O)=O)O3" 
GRC SMILES           CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](Cl)[P](O)(O)=O)O3" 
GRC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)([C@@H](P(=O)(O)O)Cl)O)O)N=C(NC2=O)N" 
GRC SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)Cl)O)O)N=C(NC2=O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GRC "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine"                                                                
GRC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(R)-[[[(2R,3S,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]-chloranyl-methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GRC "Create component" 2012-06-06 RCSB 
# 
