data_JVC
# 
_chem_comp.id                                    JVC 
_chem_comp.name                                  "1-[(8R,15S,18S)-15-[[3-(aminomethyl)phenyl]methyl]-18-(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H50 N10 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-11 
_chem_comp.pdbx_modified_date                    2023-03-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        678.825 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JVC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZPD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JVC N1  N1  N 0 1 N N N 8.360  -10.636 5.942  7.425  -4.567 0.972  N1  JVC 1  
JVC C7  C1  C 0 1 N N N 0.776  -14.850 3.966  -1.912 -2.784 0.564  C7  JVC 2  
JVC C8  C2  C 0 1 N N S 0.069  -13.822 3.081  -3.207 -2.029 0.708  C8  JVC 3  
JVC N2  N2  N 0 1 N N N 7.231  -10.933 3.942  6.045  -2.906 1.822  N2  JVC 4  
JVC C9  C3  C 0 1 N N N -0.475 -14.476 1.795  -4.309 -2.755 -0.065 C9  JVC 5  
JVC O1  O1  O 0 1 N N N 8.234  -16.192 1.606  5.641  1.533  0.979  O1  JVC 6  
JVC C1  C4  C 0 1 N N R 5.581  -12.985 5.199  4.111  -3.265 -0.118 C1  JVC 7  
JVC C5  C5  C 0 1 N N N 2.524  -14.811 6.794  0.574  -3.675 -0.535 C5  JVC 8  
JVC C6  C6  C 0 1 N N N 1.301  -15.537 6.255  -0.602 -4.624 -0.298 C6  JVC 9  
JVC N3  N3  N 0 1 N N N 0.572  -14.736 5.280  -1.858 -3.850 -0.282 N3  JVC 10 
JVC C4  C7  C 0 1 N N N 3.500  -14.379 5.701  1.836  -4.271 0.091  C4  JVC 11 
JVC O4  O2  O 0 1 N N N 1.512  -15.713 3.481  -0.929 -2.444 1.188  O4  JVC 12 
JVC C3  C8  C 0 1 N N N 4.670  -13.596 6.267  3.026  -4.061 -0.847 C3  JVC 13 
JVC O3  O3  O 0 1 N N N 0.027  -11.146 4.021  -3.019 0.103  2.270  O3  JVC 14 
JVC C2  C9  C 0 1 N N N 7.370  -11.271 5.211  6.267  -3.826 0.925  C2  JVC 15 
JVC N4  N4  N 0 1 N N N -5.421 -11.123 0.900  -8.474 0.144  -2.454 N4  JVC 16 
JVC N   N5  N 0 1 N N N 6.604  -12.175 5.842  5.345  -4.055 -0.068 N   JVC 17 
JVC C   C10 C 0 1 N N N 6.153  -14.077 4.287  4.371  -1.976 -0.853 C   JVC 18 
JVC O   O4  O 0 1 N N N 5.573  -14.401 3.254  4.184  -1.902 -2.049 O   JVC 19 
JVC C10 C11 C 0 1 Y N N -1.274 -13.509 0.952  -5.629 -2.070 0.178  C10 JVC 20 
JVC C11 C12 C 0 1 Y N N -2.621 -13.302 1.227  -6.040 -1.046 -0.654 C11 JVC 21 
JVC C12 C13 C 0 1 Y N N -3.415 -12.501 0.411  -7.251 -0.417 -0.430 C12 JVC 22 
JVC C13 C14 C 0 1 N N N -4.905 -12.455 0.635  -7.698 0.700  -1.337 C13 JVC 23 
JVC C14 C15 C 0 1 Y N N -2.824 -11.857 -0.667 -8.050 -0.813 0.626  C14 JVC 24 
JVC C15 C16 C 0 1 Y N N -1.478 -12.028 -0.938 -7.640 -1.837 1.458  C15 JVC 25 
JVC C16 C17 C 0 1 Y N N -0.709 -12.854 -0.131 -6.431 -2.469 1.231  C16 JVC 26 
JVC C17 C18 C 0 1 N N N 0.873  -11.497 3.191  -2.988 0.345  1.082  C17 JVC 27 
JVC C18 C19 C 0 1 N N S 1.881  -10.489 2.640  -2.885 1.765  0.592  C18 JVC 28 
JVC C19 C20 C 0 1 N N N 1.226  -9.137  2.378  -2.247 1.783  -0.798 C19 JVC 29 
JVC C20 C21 C 0 1 N N N 0.103  -9.180  1.366  -0.786 1.339  -0.696 C20 JVC 30 
JVC C21 C22 C 0 1 N N N -0.184 -7.807  0.752  -0.113 1.478  -2.062 C21 JVC 31 
JVC C22 C23 C 0 1 N N N -1.202 -7.897  -0.369 1.347  1.034  -1.959 C22 JVC 32 
JVC C23 C24 C 0 1 N N N 3.959  -11.155 1.586  -1.312 3.544  0.971  C23 JVC 33 
JVC C24 C25 C 0 1 N N N 4.666  -11.467 0.280  -0.417 4.380  1.849  C24 JVC 34 
JVC C25 C26 C 0 1 Y N N 6.167  -11.348 0.369  0.777  4.841  1.053  C25 JVC 35 
JVC C26 C27 C 0 1 Y N N 6.947  -12.456 0.679  1.964  4.137  1.124  C26 JVC 36 
JVC C27 C28 C 0 1 Y N N 8.330  -12.365 0.784  3.061  4.557  0.396  C27 JVC 37 
JVC C28 C29 C 0 1 N N N 9.143  -13.583 1.136  4.356  3.789  0.475  C28 JVC 38 
JVC C29 C30 C 0 1 N N N 8.267  -15.391 2.537  5.011  1.530  -0.058 C29 JVC 39 
JVC C30 C31 C 0 1 N N N 7.815  -15.784 3.931  5.040  0.327  -0.962 C30 JVC 40 
JVC C31 C32 C 0 1 Y N N 8.940  -11.132 0.560  2.971  5.682  -0.403 C31 JVC 41 
JVC C32 C33 C 0 1 Y N N 8.175  -10.020 0.254  1.784  6.386  -0.473 C32 JVC 42 
JVC C33 C34 C 0 1 Y N N 6.796  -10.128 0.164  0.686  5.963  0.252  C33 JVC 43 
JVC N5  N6  N 0 1 N N N 0.994  -12.752 2.738  -3.046 -0.666 0.169  N5  JVC 44 
JVC N6  N7  N 0 1 N N N -0.656 -8.518  -1.595 1.993  1.168  -3.272 N6  JVC 45 
JVC N7  N8  N 0 1 N N N 2.643  -10.954 1.490  -2.044 2.537  1.535  N7  JVC 46 
JVC N8  N9  N 0 1 N N N 8.728  -14.151 2.409  4.272  2.616  -0.417 N8  JVC 47 
JVC N9  N10 N 0 1 N N N 7.279  -14.665 4.675  4.818  -0.892 -0.153 N9  JVC 48 
JVC O2  O5  O 0 1 N N N 4.568  -11.068 2.659  -1.381 3.762  -0.220 O2  JVC 49 
JVC H1  H1  H 0 1 N N N 8.486  -10.856 6.909  8.076  -4.405 1.673  H1  JVC 50 
JVC H2  H2  H 0 1 N N N 8.948  -9.957  5.503  7.588  -5.254 0.307  H2  JVC 51 
JVC H3  H3  H 0 1 N N N -0.780 -13.405 3.642  -3.479 -1.973 1.762  H3  JVC 52 
JVC H4  H4  H 0 1 N N N 7.889  -10.232 3.667  6.697  -2.745 2.522  H4  JVC 53 
JVC H5  H5  H 0 1 N N N -1.123 -15.320 2.074  -4.080 -2.734 -1.131 H5  JVC 54 
JVC H6  H6  H 0 1 N N N 0.373  -14.846 1.200  -4.369 -3.790 0.273  H6  JVC 55 
JVC H7  H7  H 0 1 N N N 4.960  -12.327 4.574  3.780  -3.044 0.897  H7  JVC 56 
JVC H8  H8  H 0 1 N N N 3.051  -15.482 7.488  0.726  -3.544 -1.606 H8  JVC 57 
JVC H9  H9  H 0 1 N N N 2.188  -13.915 7.336  0.360  -2.710 -0.076 H9  JVC 58 
JVC H10 H10 H 0 1 N N N 0.630  -15.772 7.094  -0.640 -5.363 -1.099 H10 JVC 59 
JVC H11 H11 H 0 1 N N N 1.627  -16.471 5.774  -0.474 -5.131 0.658  H11 JVC 60 
JVC H12 H12 H 0 1 N N N -0.105 -14.077 5.607  -2.610 -4.089 -0.846 H12 JVC 61 
JVC H13 H13 H 0 1 N N N 2.966  -13.747 4.976  2.035  -3.780 1.044  H13 JVC 62 
JVC H14 H14 H 0 1 N N N 3.884  -15.275 5.192  1.689  -5.338 0.258  H14 JVC 63 
JVC H15 H15 H 0 1 N N N 5.272  -14.274 6.889  2.701  -3.509 -1.729 H15 JVC 64 
JVC H16 H16 H 0 1 N N N 4.273  -12.782 6.891  3.426  -5.029 -1.149 H16 JVC 65 
JVC H17 H17 H 0 1 N N N -6.410 -11.170 1.038  -8.786 0.873  -3.077 H17 JVC 66 
JVC H18 H18 H 0 1 N N N -4.987 -10.755 1.722  -7.941 -0.554 -2.952 H18 JVC 67 
JVC H20 H20 H 0 1 N N N 6.747  -12.300 6.824  5.510  -4.739 -0.735 H20 JVC 68 
JVC H21 H21 H 0 1 N N N -3.061 -13.773 2.093  -5.416 -0.736 -1.479 H21 JVC 69 
JVC H22 H22 H 0 1 N N N -5.402 -12.846 -0.265 -6.825 1.224  -1.727 H22 JVC 70 
JVC H23 H23 H 0 1 N N N -5.146 -13.097 1.495  -8.320 1.398  -0.775 H23 JVC 71 
JVC H24 H24 H 0 1 N N N -3.420 -11.217 -1.300 -8.996 -0.322 0.800  H24 JVC 72 
JVC H25 H25 H 0 1 N N N -1.026 -11.519 -1.777 -8.264 -2.146 2.283  H25 JVC 73 
JVC H26 H26 H 0 1 N N N 0.340  -12.988 -0.349 -6.110 -3.270 1.881  H26 JVC 74 
JVC H27 H27 H 0 1 N N N 2.606  -10.319 3.449  -3.879 2.208  0.543  H27 JVC 75 
JVC H28 H28 H 0 1 N N N 1.997  -8.445  2.009  -2.788 1.102  -1.455 H28 JVC 76 
JVC H29 H29 H 0 1 N N N 0.820  -8.760  3.328  -2.292 2.793  -1.206 H29 JVC 77 
JVC H30 H30 H 0 1 N N N -0.808 -9.541  1.865  -0.267 1.964  0.031  H30 JVC 78 
JVC H31 H31 H 0 1 N N N 0.380  -9.876  0.561  -0.745 0.298  -0.375 H31 JVC 79 
JVC H32 H32 H 0 1 N N N 0.753  -7.393  0.351  -0.633 0.853  -2.789 H32 JVC 80 
JVC H33 H33 H 0 1 N N N -0.574 -7.140  1.535  -0.155 2.519  -2.383 H33 JVC 81 
JVC H34 H34 H 0 1 N N N -1.545 -6.881  -0.613 1.867  1.659  -1.233 H34 JVC 82 
JVC H35 H35 H 0 1 N N N -2.055 -8.498  -0.021 1.389  -0.007 -1.639 H35 JVC 83 
JVC H36 H36 H 0 1 N N N 4.305  -10.767 -0.488 -0.970 5.247  2.211  H36 JVC 84 
JVC H37 H37 H 0 1 N N N 4.415  -12.496 -0.016 -0.081 3.783  2.697  H37 JVC 85 
JVC H38 H38 H 0 1 N N N 6.467  -13.410 0.842  2.034  3.259  1.748  H38 JVC 86 
JVC H39 H39 H 0 1 N N N 9.013  -14.339 0.348  5.179  4.429  0.160  H39 JVC 87 
JVC H40 H40 H 0 1 N N N 10.204 -13.298 1.200  4.521  3.458  1.500  H40 JVC 88 
JVC H41 H41 H 0 1 N N N 7.036  -16.556 3.845  4.253  0.416  -1.711 H41 JVC 89 
JVC H42 H42 H 0 1 N N N 8.677  -16.192 4.479  6.009  0.265  -1.456 H42 JVC 90 
JVC H43 H43 H 0 1 N N N 10.014 -11.044 0.626  3.828  6.010  -0.972 H43 JVC 91 
JVC H44 H44 H 0 1 N N N 8.653  -9.067  0.085  1.714  7.267  -1.094 H44 JVC 92 
JVC H45 H45 H 0 1 N N N 6.205  -9.254  -0.068 -0.244 6.510  0.193  H45 JVC 93 
JVC H46 H46 H 0 1 N N N 1.761  -12.965 2.132  -2.984 -0.497 -0.784 H46 JVC 94 
JVC H47 H47 H 0 1 N N N -1.367 -8.551  -2.297 1.911  2.111  -3.621 H47 JVC 95 
JVC H48 H48 H 0 1 N N N 0.116  -7.976  -1.928 2.960  0.881  -3.230 H48 JVC 96 
JVC H50 H50 H 0 1 N N N 2.177  -11.124 0.622  -2.016 2.343  2.485  H50 JVC 97 
JVC H51 H51 H 0 1 N N N 8.793  -13.581 3.228  3.720  2.618  -1.214 H51 JVC 98 
JVC H52 H52 H 0 1 N N N 7.759  -14.332 5.486  4.978  -0.919 0.804  H52 JVC 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JVC N6  C22 SING N N 1   
JVC C15 C14 DOUB Y N 2   
JVC C15 C16 SING Y N 3   
JVC C14 C12 SING Y N 4   
JVC C22 C21 SING N N 5   
JVC C16 C10 DOUB Y N 6   
JVC C33 C32 DOUB Y N 7   
JVC C33 C25 SING Y N 8   
JVC C32 C31 SING Y N 9   
JVC C24 C25 SING N N 10  
JVC C24 C23 SING N N 11  
JVC C25 C26 DOUB Y N 12  
JVC C12 C13 SING N N 13  
JVC C12 C11 DOUB Y N 14  
JVC C31 C27 DOUB Y N 15  
JVC C13 N4  SING N N 16  
JVC C26 C27 SING Y N 17  
JVC C21 C20 SING N N 18  
JVC C27 C28 SING N N 19  
JVC C10 C11 SING Y N 20  
JVC C10 C9  SING N N 21  
JVC C28 N8  SING N N 22  
JVC C20 C19 SING N N 23  
JVC N7  C23 SING N N 24  
JVC N7  C18 SING N N 25  
JVC C23 O2  DOUB N N 26  
JVC O1  C29 DOUB N N 27  
JVC C9  C8  SING N N 28  
JVC C19 C18 SING N N 29  
JVC N8  C29 SING N N 30  
JVC C29 C30 SING N N 31  
JVC C18 C17 SING N N 32  
JVC N5  C8  SING N N 33  
JVC N5  C17 SING N N 34  
JVC C8  C7  SING N N 35  
JVC C17 O3  DOUB N N 36  
JVC O   C   DOUB N N 37  
JVC O4  C7  DOUB N N 38  
JVC C30 N9  SING N N 39  
JVC N2  C2  DOUB N N 40  
JVC C7  N3  SING N N 41  
JVC C   N9  SING N N 42  
JVC C   C1  SING N N 43  
JVC C1  N   SING N N 44  
JVC C1  C3  SING N N 45  
JVC C2  N   SING N N 46  
JVC C2  N1  SING N N 47  
JVC N3  C6  SING N N 48  
JVC C4  C3  SING N N 49  
JVC C4  C5  SING N N 50  
JVC C6  C5  SING N N 51  
JVC N1  H1  SING N N 52  
JVC N1  H2  SING N N 53  
JVC C8  H3  SING N N 54  
JVC N2  H4  SING N N 55  
JVC C9  H5  SING N N 56  
JVC C9  H6  SING N N 57  
JVC C1  H7  SING N N 58  
JVC C5  H8  SING N N 59  
JVC C5  H9  SING N N 60  
JVC C6  H10 SING N N 61  
JVC C6  H11 SING N N 62  
JVC N3  H12 SING N N 63  
JVC C4  H13 SING N N 64  
JVC C4  H14 SING N N 65  
JVC C3  H15 SING N N 66  
JVC C3  H16 SING N N 67  
JVC N4  H17 SING N N 68  
JVC N4  H18 SING N N 69  
JVC N   H20 SING N N 70  
JVC C11 H21 SING N N 71  
JVC C13 H22 SING N N 72  
JVC C13 H23 SING N N 73  
JVC C14 H24 SING N N 74  
JVC C15 H25 SING N N 75  
JVC C16 H26 SING N N 76  
JVC C18 H27 SING N N 77  
JVC C19 H28 SING N N 78  
JVC C19 H29 SING N N 79  
JVC C20 H30 SING N N 80  
JVC C20 H31 SING N N 81  
JVC C21 H32 SING N N 82  
JVC C21 H33 SING N N 83  
JVC C22 H34 SING N N 84  
JVC C22 H35 SING N N 85  
JVC C24 H36 SING N N 86  
JVC C24 H37 SING N N 87  
JVC C26 H38 SING N N 88  
JVC C28 H39 SING N N 89  
JVC C28 H40 SING N N 90  
JVC C30 H41 SING N N 91  
JVC C30 H42 SING N N 92  
JVC C31 H43 SING N N 93  
JVC C32 H44 SING N N 94  
JVC C33 H45 SING N N 95  
JVC N5  H46 SING N N 96  
JVC N6  H47 SING N N 97  
JVC N6  H48 SING N N 98  
JVC N7  H50 SING N N 99  
JVC N8  H51 SING N N 100 
JVC N9  H52 SING N N 101 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JVC InChI            InChI                1.06  "InChI=1S/C34H50N10O5/c35-13-3-1-11-27-33(49)43-28(17-22-7-5-9-24(15-22)19-36)32(48)39-14-4-2-12-26(44-34(37)38)31(47)41-21-30(46)40-20-25-10-6-8-23(16-25)18-29(45)42-27/h5-10,15-16,26-28H,1-4,11-14,17-21,35-36H2,(H,39,48)(H,40,46)(H,41,47)(H,42,45)(H,43,49)(H4,37,38,44)/t26-,27+,28+/m1/s1" 
JVC InChIKey         InChI                1.06  INGPJUUGYREBHI-PKTNWEFCSA-N                                                                                                                                                                                                                                                                         
JVC SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@@H]1NC(=O)Cc2cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC(=O)[C@H](Cc3cccc(CN)c3)NC1=O)NC(N)=N)c2"                                                                                                                                                                                                     
JVC SMILES           CACTVS               3.385 "NCCCC[CH]1NC(=O)Cc2cccc(CNC(=O)CNC(=O)[CH](CCCCNC(=O)[CH](Cc3cccc(CN)c3)NC1=O)NC(N)=N)c2"                                                                                                                                                                                                          
JVC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)CCCCN)Cc3cccc(c3)CN"                                                                                                                                                                                              
JVC SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)CNC(=O)CNC(=O)C(CCCCNC(=O)C(NC(=O)C(NC(=O)C2)CCCCN)Cc3cccc(c3)CN)NC(=N)N"                                                                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           JVC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[(8~{R},15~{S},18~{S})-15-[[3-(aminomethyl)phenyl]methyl]-18-(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JVC "Create component"  2022-05-11 PDBE 
JVC "Modify descriptor" 2022-08-22 RCSB 
JVC "Initial release"   2023-03-22 RCSB 
# 
