data_LEC
#

_chem_comp.id                                   LEC
_chem_comp.name                                 "4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H18 N2 O8"
_chem_comp.mon_nstd_parent_comp_id              NAG
_chem_comp.pdbx_synonyms                        
;N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide; 4-nitrophenyl
2-acetamido-2-deoxy-beta-D-glucoside; 4-nitrophenyl 2-acetamido-2-deoxy-D-glucoside; 4-nitrophenyl
2-acetamido-2-deoxy-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-11-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       342.301
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LEC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3F64
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  LEC  "N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide"  PDB  ?  
2  LEC  "4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucoside"                                          PDB  ?  
3  LEC  "4-nitrophenyl 2-acetamido-2-deoxy-D-glucoside"                                               PDB  ?  
4  LEC  "4-nitrophenyl 2-acetamido-2-deoxy-glucoside"                                                 PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LEC  C8     C8     C   0  1  N  N  N  35.896  50.209  14.033  -2.186   4.464   0.722  C8     LEC   1  
LEC  C7     C7     C   0  1  N  N  N  36.933  49.805  15.065  -2.078   3.139   0.012  C7     LEC   2  
LEC  O7     O7     O   0  1  N  N  N  36.939  50.318  16.206  -1.631   3.089  -1.114  O7     LEC   3  
LEC  N2     N2     N   0  1  N  N  N  37.779  48.848  14.654  -2.478   2.010   0.629  N2     LEC   4  
LEC  C2     C2     C   0  1  N  N  R  37.764  48.230  13.307  -2.374   0.722  -0.061  C2     LEC   5  
LEC  C3     C3     C   0  1  N  N  R  37.685  46.687  13.439  -3.401  -0.255   0.519  C3     LEC   6  
LEC  O3     O3     O   0  1  N  N  N  36.361  46.300  13.867  -4.720   0.238   0.274  O3     LEC   7  
LEC  C4     C4     C   0  1  N  N  S  38.071  45.939  12.134  -3.230  -1.620  -0.155  C4     LEC   8  
LEC  O4     O4     O   0  1  N  N  N  38.184  44.522  12.386  -4.135  -2.558   0.430  O4     LEC   9  
LEC  C5     C5     C   0  1  N  N  R  39.386  46.478  11.543  -1.791  -2.103   0.047  C5     LEC  10  
LEC  C6     C6     C   0  1  N  N  N  39.783  45.770  10.214  -1.596  -3.437  -0.675  C6     LEC  11  
LEC  O6     O6     O   0  1  N  N  N  38.874  46.114   9.169  -0.290  -3.945  -0.391  O6     LEC  12  
LEC  O5     O5     O   0  1  N  N  N  39.330  47.920  11.326  -0.886  -1.135  -0.488  O5     LEC  13  
LEC  C1     C1     C   0  1  N  N  S  39.022  48.704  12.535  -0.968   0.148   0.137  C1     LEC  14  
LEC  O1     O1     O   0  1  N  N  N  38.751  50.066  12.130  -0.007   1.027  -0.451  O1     LEC  15  
LEC  "C1'"  "C1'"  C   0  1  Y  N  N  39.778  50.848  11.652   1.304   0.717  -0.273  "C1'"  LEC  16  
LEC  "C2'"  "C2'"  C   0  1  Y  N  N  40.670  50.393  10.687   2.290   1.527  -0.817  "C2'"  LEC  17  
LEC  "C3'"  "C3'"  C   0  1  Y  N  N  41.691  51.210  10.186   3.622   1.209  -0.634  "C3'"  LEC  18  
LEC  "C4'"  "C4'"  C   0  1  Y  N  N  41.818  52.516  10.647   3.972   0.086   0.091  "C4'"  LEC  19  
LEC  "N1'"  "N1'"  N   1  1  N  N  N  42.784  53.340  10.202   5.400  -0.252   0.287  "N1'"  LEC  20  
LEC  "O2'"  "O2'"  O  -1  1  N  N  N  43.814  52.918   9.345   6.265   0.460  -0.191  "O2'"  LEC  21  
LEC  "O1'"  "O1'"  O   0  1  N  N  N  42.792  54.667  10.628   5.710  -1.242   0.925  "O1'"  LEC  22  
LEC  "C5'"  "C5'"  C   0  1  Y  N  N  40.922  52.971  11.609   2.991  -0.723   0.635  "C5'"  LEC  23  
LEC  "C6'"  "C6'"  C   0  1  Y  N  N  39.908  52.156  12.101   1.658  -0.407   0.459  "C6'"  LEC  24  
LEC  H81    H8     H   0  1  N  N  N  34.914  50.307  14.518  -1.817   5.256   0.070  H81    LEC  25  
LEC  H82    H8A    H   0  1  N  N  N  36.181  51.172  13.585  -3.228   4.657   0.974  H82    LEC  26  
LEC  H83    H8B    H   0  1  N  N  N  35.842  49.441  13.248  -1.590   4.437   1.634  H83    LEC  27  
LEC  HN2    HN2    H   0  1  N  N  N  38.469  48.529  15.303  -2.836   2.050   1.530  HN2    LEC  28  
LEC  H2     H2     H   0  1  N  N  N  36.877  48.543  12.736  -2.564   0.862  -1.125  H2     LEC  29  
LEC  H3     H3     H   0  1  N  N  N  38.427  46.392  14.195  -3.244  -0.355   1.593  H3     LEC  30  
LEC  HO3    HO3    H   0  1  N  Y  N  36.346  46.215  14.813  -5.423  -0.333   0.615  HO3    LEC  31  
LEC  H4     H4     H   0  1  N  N  N  37.273  46.114  11.398  -3.439  -1.528  -1.221  H4     LEC  32  
LEC  HO4    HO4    H   0  1  N  Y  N  38.209  44.054  11.560  -4.081  -3.446   0.050  HO4    LEC  33  
LEC  H5     H5     H   0  1  N  N  N  40.160  46.256  12.293  -1.598  -2.233   1.111  H5     LEC  34  
LEC  H61    H6     H   0  1  N  N  N  40.797  46.086   9.927  -2.345  -4.150  -0.331  H61    LEC  35  
LEC  H62    H6A    H   0  1  N  N  N  39.750  44.681  10.369  -1.702  -3.288  -1.750  H62    LEC  36  
LEC  HO6    HO6    H   0  1  N  Y  N  37.996  46.190   9.525  -0.097  -4.792  -0.817  HO6    LEC  37  
LEC  H1     H1     H   0  1  N  N  N  39.892  48.590  13.199  -0.763   0.047   1.203  H1     LEC  38  
LEC  "H2'"  "H2'"  H   0  1  N  N  N  40.573  49.384  10.315   2.016   2.405  -1.384  "H2'"  LEC  39  
LEC  "H3'"  "H3'"  H   0  1  N  N  N  42.377  50.828   9.445   4.390   1.839  -1.058  "H3'"  LEC  40  
LEC  "H5'"  "H5'"  H   0  1  N  N  N  41.016  53.980  11.982   3.268  -1.601   1.200  "H5'"  LEC  41  
LEC  "H6'"  "H6'"  H   0  1  N  N  N  39.218  52.542  12.836   0.892  -1.037   0.887  "H6'"  LEC  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LEC  C8     C7     SING  N  N   1  
LEC  C7     O7     DOUB  N  N   2  
LEC  C7     N2     SING  N  N   3  
LEC  N2     C2     SING  N  N   4  
LEC  C2     C3     SING  N  N   5  
LEC  C2     C1     SING  N  N   6  
LEC  C3     O3     SING  N  N   7  
LEC  C3     C4     SING  N  N   8  
LEC  C4     O4     SING  N  N   9  
LEC  C4     C5     SING  N  N  10  
LEC  C5     C6     SING  N  N  11  
LEC  C5     O5     SING  N  N  12  
LEC  C6     O6     SING  N  N  13  
LEC  O5     C1     SING  N  N  14  
LEC  C1     O1     SING  N  N  15  
LEC  O1     "C1'"  SING  N  N  16  
LEC  "C1'"  "C2'"  DOUB  Y  N  17  
LEC  "C1'"  "C6'"  SING  Y  N  18  
LEC  "C2'"  "C3'"  SING  Y  N  19  
LEC  "C3'"  "C4'"  DOUB  Y  N  20  
LEC  "C4'"  "N1'"  SING  N  N  21  
LEC  "C4'"  "C5'"  SING  Y  N  22  
LEC  "N1'"  "O2'"  SING  N  N  23  
LEC  "N1'"  "O1'"  DOUB  N  N  24  
LEC  "C5'"  "C6'"  DOUB  Y  N  25  
LEC  C8     H81    SING  N  N  26  
LEC  C8     H82    SING  N  N  27  
LEC  C8     H83    SING  N  N  28  
LEC  N2     HN2    SING  N  N  29  
LEC  C2     H2     SING  N  N  30  
LEC  C3     H3     SING  N  N  31  
LEC  O3     HO3    SING  N  N  32  
LEC  C4     H4     SING  N  N  33  
LEC  O4     HO4    SING  N  N  34  
LEC  C5     H5     SING  N  N  35  
LEC  C6     H61    SING  N  N  36  
LEC  C6     H62    SING  N  N  37  
LEC  O6     HO6    SING  N  N  38  
LEC  C1     H1     SING  N  N  39  
LEC  "C2'"  "H2'"  SING  N  N  40  
LEC  "C3'"  "H3'"  SING  N  N  41  
LEC  "C5'"  "H5'"  SING  N  N  42  
LEC  "C6'"  "H6'"  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LEC  SMILES            ACDLabs               10.04  "[O-][N+](=O)c2ccc(OC1OC(C(O)C(O)C1NC(=O)C)CO)cc2"  
LEC  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1Oc2ccc(cc2)[N+]([O-])=O"  
LEC  SMILES            CACTVS                3.341  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1Oc2ccc(cc2)[N+]([O-])=O"  
LEC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1Oc2ccc(cc2)[N+](=O)[O-])CO)O)O"  
LEC  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NC1C(C(C(OC1Oc2ccc(cc2)[N+](=O)[O-])CO)O)O"  
LEC  InChI             InChI                 1.03   "InChI=1S/C14H18N2O8/c1-7(18)15-11-13(20)12(19)10(6-17)24-14(11)23-9-4-2-8(3-5-9)16(21)22/h2-5,10-14,17,19-20H,6H2,1H3,(H,15,18)/t10-,11-,12-,13-,14-/m1/s1"  
LEC  InChIKey          InChI                 1.03   OMRLTNCLYHKQCK-DHGKCCLASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LEC  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-nitrophenyl 2-(acetylamino)-2-deoxy-beta-D-glucopyranoside"  
LEC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide"  
#
_pdbx_chem_comp_related.comp_id            LEC
_pdbx_chem_comp_related.related_comp_id    NAG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  LEC  C1   NAG  C1   "Carbohydrate core"  
 2  LEC  C2   NAG  C2   "Carbohydrate core"  
 3  LEC  C3   NAG  C3   "Carbohydrate core"  
 4  LEC  C4   NAG  C4   "Carbohydrate core"  
 5  LEC  C5   NAG  C5   "Carbohydrate core"  
 6  LEC  C6   NAG  C6   "Carbohydrate core"  
 7  LEC  C7   NAG  C7   "Carbohydrate core"  
 8  LEC  C8   NAG  C8   "Carbohydrate core"  
 9  LEC  N2   NAG  N2   "Carbohydrate core"  
10  LEC  O1   NAG  O1   "Carbohydrate core"  
11  LEC  O3   NAG  O3   "Carbohydrate core"  
12  LEC  O4   NAG  O4   "Carbohydrate core"  
13  LEC  O5   NAG  O5   "Carbohydrate core"  
14  LEC  O6   NAG  O6   "Carbohydrate core"  
15  LEC  O7   NAG  O7   "Carbohydrate core"  
16  LEC  H1   NAG  H1   "Carbohydrate core"  
17  LEC  H2   NAG  H2   "Carbohydrate core"  
18  LEC  H3   NAG  H3   "Carbohydrate core"  
19  LEC  H4   NAG  H4   "Carbohydrate core"  
20  LEC  H5   NAG  H5   "Carbohydrate core"  
21  LEC  H61  NAG  H61  "Carbohydrate core"  
22  LEC  H62  NAG  H62  "Carbohydrate core"  
23  LEC  H81  NAG  H81  "Carbohydrate core"  
24  LEC  H82  NAG  H82  "Carbohydrate core"  
25  LEC  H83  NAG  H83  "Carbohydrate core"  
26  LEC  HN2  NAG  HN2  "Carbohydrate core"  
27  LEC  HO3  NAG  HO3  "Carbohydrate core"  
28  LEC  HO4  NAG  HO4  "Carbohydrate core"  
29  LEC  HO6  NAG  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LEC  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
LEC  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
LEC  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
LEC  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LEC  "Create component"          2008-11-07  PDBJ  
LEC  "Modify aromatic_flag"      2011-06-04  RCSB  
LEC  "Modify descriptor"         2011-06-04  RCSB  
LEC  "Other modification"        2020-07-03  RCSB  
LEC  "Modify parent residue"     2020-07-17  RCSB  
LEC  "Modify name"               2020-07-17  RCSB  
LEC  "Modify synonyms"           2020-07-17  RCSB  
LEC  "Modify internal type"      2020-07-17  RCSB  
LEC  "Modify linking type"       2020-07-17  RCSB  
LEC  "Modify atom id"            2020-07-17  RCSB  
LEC  "Modify component atom id"  2020-07-17  RCSB  
LEC  "Modify leaving atom flag"  2020-07-17  RCSB  
##
