data_LGC
#

_chem_comp.id                                   LGC
_chem_comp.name                                 "D-glucono-1,5-lactone"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H10 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE; GLUCONOLACTONE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-08-25
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       178.140
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LGC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1E6X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  LGC  "(3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE"  PDB  ?  
2  LGC  GLUCONOLACTONE                                                               PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LGC  C1   C1    C  0  1  N  N  N  46.845  119.632  53.242   1.461  -0.085  -0.630  C1   LGC   1  
LGC  C2   C2    C  0  1  N  N  R  47.722  119.044  54.168   0.352  -0.403  -1.610  C2   LGC   2  
LGC  O5   O5    O  0  1  N  N  N  46.662  120.976  52.890   1.212  -0.283   0.683  O5   LGC   3  
LGC  O1   O1    O  0  1  N  N  N  45.918  118.964  52.689   2.530   0.330  -1.008  O1   LGC   4  
LGC  O2   O2    O  0  1  N  N  N  47.203  117.934  54.857   0.679   0.127  -2.895  O2   LGC   5  
LGC  C3   C3    C  0  1  N  N  S  48.230  120.142  55.127  -0.943   0.237  -1.099  C3   LGC   6  
LGC  O3   O3    O  0  1  N  N  N  49.411  119.612  55.746  -2.035  -0.168  -1.926  O3   LGC   7  
LGC  C4   C4    C  0  1  N  N  S  48.578  121.340  54.213  -1.195  -0.215   0.342  C4   LGC   8  
LGC  O4   O4    O  0  1  N  N  N  49.211  122.398  54.960  -2.414   0.360   0.816  O4   LGC   9  
LGC  C5   C5    C  0  1  N  N  R  47.215  121.967  53.781  -0.032   0.240   1.229  C5   LGC  10  
LGC  C6   C6    C  0  1  N  N  N  47.179  123.229  52.881  -0.233  -0.290   2.650  C6   LGC  11  
LGC  O6   O6    O  0  1  N  N  N  48.014  123.029  51.675   0.855   0.131   3.474  O6   LGC  12  
LGC  H2   HC2   H  0  1  N  N  N  48.571  118.609  53.590   0.224  -1.483  -1.681  H2   LGC  13  
LGC  HO2  HO2   H  0  1  N  Y  N  47.796  117.536  55.483   1.506  -0.290  -3.168  HO2  LGC  14  
LGC  H3   HC3   H  0  1  N  N  N  47.504  120.450  55.915  -0.848   1.322  -1.127  H3   LGC  15  
LGC  HO3  HO3   H  0  1  N  Y  N  49.723  120.287  56.336  -1.834   0.133  -2.822  HO3  LGC  16  
LGC  H4   HC4   H  0  1  N  N  N  49.233  120.981  53.385  -1.269  -1.302   0.374  H4   LGC  17  
LGC  HO4  HO4   H  0  1  N  N  N  49.424  123.133  54.398  -3.117   0.047   0.230  HO4  LGC  18  
LGC  H5   HC5   H  0  1  N  N  N  46.728  122.253  54.742   0.007   1.329   1.248  H5   LGC  19  
LGC  H61  HC61  H  0  1  N  N  N  46.135  123.521  52.619  -0.272  -1.379   2.629  H61  LGC  20  
LGC  H62  HC62  H  0  1  N  N  N  47.473  124.146  53.441  -1.167   0.099   3.054  H62  LGC  21  
LGC  HO6  HO6   H  0  1  N  N  N  47.991  123.802  51.123   0.690  -0.223   4.358  HO6  LGC  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LGC  C1  C2   SING  N  N   1  
LGC  C1  O5   SING  N  N   2  
LGC  C1  O1   DOUB  N  N   3  
LGC  C2  O2   SING  N  N   4  
LGC  C2  C3   SING  N  N   5  
LGC  C2  H2   SING  N  N   6  
LGC  O5  C5   SING  N  N   7  
LGC  O2  HO2  SING  N  N   8  
LGC  C3  O3   SING  N  N   9  
LGC  C3  C4   SING  N  N  10  
LGC  C3  H3   SING  N  N  11  
LGC  O3  HO3  SING  N  N  12  
LGC  C4  O4   SING  N  N  13  
LGC  C4  C5   SING  N  N  14  
LGC  C4  H4   SING  N  N  15  
LGC  O4  HO4  SING  N  N  16  
LGC  C5  C6   SING  N  N  17  
LGC  C5  H5   SING  N  N  18  
LGC  C6  O6   SING  N  N  19  
LGC  C6  H61  SING  N  N  20  
LGC  C6  H62  SING  N  N  21  
LGC  O6  HO6  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LGC  SMILES            ACDLabs               10.04  "O=C1OC(CO)C(O)C(O)C1O"  
LGC  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1OC(=O)[C@H](O)[C@@H](O)[C@@H]1O"  
LGC  SMILES            CACTVS                3.341  "OC[CH]1OC(=O)[CH](O)[CH](O)[CH]1O"  
LGC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H](C(=O)O1)O)O)O)O"  
LGC  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(=O)O1)O)O)O)O"  
LGC  InChI             InChI                 1.03   "InChI=1S/C6H10O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-5,7-10H,1H2/t2-,3-,4+,5-/m1/s1"  
LGC  InChIKey          InChI                 1.03   PHOQVHQSTUBQQK-SQOUGZDYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LGC  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-one (non-preferred name)"  
LGC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-one"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LGC  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
LGC  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
LGC  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LGC  "Create component"          2000-08-25  EBI   
LGC  "Modify descriptor"         2011-06-04  RCSB  
LGC  "Other modification"        2020-07-03  RCSB  
LGC  "Modify name"               2020-07-17  RCSB  
LGC  "Modify synonyms"           2020-07-17  RCSB  
LGC  "Modify linking type"       2020-07-17  RCSB  
LGC  "Modify atom id"            2020-07-17  RCSB  
LGC  "Modify component atom id"  2020-07-17  RCSB  
LGC  "Modify leaving atom flag"  2020-07-17  RCSB  
##
