data_LMC
# 
_chem_comp.id                                    LMC 
_chem_comp.name                                  "(2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H21 N O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2E,4E,6Z)-3-methyl-6-(1,3,3-trimethylindolin-2-ylidene)hexa-2,4-dienal" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-12-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        267.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LMC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3FEP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LMC C18  C18  C 0 1 N N N N N N 32.694 -17.221 6.489 6.227  -0.375 -0.002 C18  LMC 1  
LMC C17  C17  C 0 1 N N N N N N 33.910 -17.471 6.950 5.134  0.491  -0.000 C17  LMC 2  
LMC C16  C16  C 0 1 N N N N N N 34.792 -18.203 6.261 3.850  -0.016 -0.001 C16  LMC 3  
LMC C20  C20  C 0 1 N N N N N N 34.448 -18.787 4.929 3.629  -1.507 -0.004 C20  LMC 4  
LMC C15  C15  C 0 1 N N N N N N 35.995 -18.405 6.795 2.755  0.851  0.000  C15  LMC 5  
LMC C14  C14  C 0 1 N N N N N N 37.070 -18.692 6.073 1.474  0.345  -0.001 C14  LMC 6  
LMC C13  C13  C 0 1 N N N N N N 38.186 -18.857 6.767 0.375  1.217  0.001  C13  LMC 7  
LMC C8   C8   C 0 1 N N N N N N 39.321 -19.697 6.332 -0.886 0.718  -0.000 C8   LMC 8  
LMC C7   C7   C 0 1 N N N N N N 39.377 -20.444 5.054 -1.278 -0.745 0.003  C7   LMC 9  
LMC C11  C11  C 0 1 N N N N N N 38.314 -21.520 4.943 -0.749 -1.444 -1.251 C11  LMC 10 
LMC C10  C10  C 0 1 N N N N N N 39.397 -19.495 3.873 -0.754 -1.436 1.264  C10  LMC 11 
LMC C2   C2   C 0 1 Y N N N N N 40.723 -21.012 5.284 -2.789 -0.724 0.000  C2   LMC 12 
LMC C3   C3   C 0 1 Y N N N N N 41.284 -20.608 6.482 -3.168 0.613  -0.004 C3   LMC 13 
LMC N9   N9   N 0 1 N N N N N N 40.406 -19.807 7.097 -2.045 1.437  0.001  N9   LMC 14 
LMC C12  C12  C 0 1 N N N N N N 40.610 -19.157 8.409 -2.101 2.901  0.004  C12  LMC 15 
LMC C1   C1   C 0 1 Y N N N N N 41.426 -21.855 4.443 -3.735 -1.724 0.002  C1   LMC 16 
LMC C6   C6   C 0 1 Y N N N N N 42.690 -22.292 4.808 -5.081 -1.402 -0.001 C6   LMC 17 
LMC C5   C5   C 0 1 Y N N N N N 43.249 -21.888 6.008 -5.471 -0.075 -0.005 C5   LMC 18 
LMC C4   C4   C 0 1 Y N N N N N 42.545 -21.043 6.846 -4.526 0.929  -0.007 C4   LMC 19 
LMC O1   O1   O 0 1 N Y N N N N 32.290 -17.739 5.219 7.358  0.072  -0.001 O1   LMC 20 
LMC H18  H18  H 0 1 N N N N N N 32.007 -16.626 7.072 6.069  -1.444 0.001  H18  LMC 21 
LMC H17  H17  H 0 1 N N N N N N 34.198 -17.072 7.911 5.292  1.560  0.002  H17  LMC 22 
LMC H20  H20  H 0 1 N N N N N N 34.363 -17.981 4.185 3.576  -1.868 1.023  H20  LMC 23 
LMC H20A H20A H 0 0 N N N N N N 35.238 -19.488 4.621 2.696  -1.736 -0.518 H20A LMC 24 
LMC H15  H15  H 0 1 N N N N N N 36.100 -18.332 7.867 2.913  1.920  0.002  H15  LMC 25 
LMC H14  H14  H 0 1 N N N N N N 37.038 -18.784 4.997 1.316  -0.724 -0.003 H14  LMC 26 
LMC H13  H13  H 0 1 N N N N N N 38.272 -18.344 7.713 0.533  2.285  0.002  H13  LMC 27 
LMC H11  H11  H 0 1 N N N N N N 38.057 -21.674 3.885 0.338  -1.368 -1.279 H11  LMC 28 
LMC H11A H11A H 0 0 N N N N N N 38.698 -22.459 5.367 -1.040 -2.494 -1.232 H11A LMC 29 
LMC H11B H11B H 0 0 N N N N N N 37.416 -21.207 5.496 -1.169 -0.967 -2.137 H11B LMC 30 
LMC H10  H10  H 0 1 N N N N N N 39.402 -18.457 4.236 -1.177 -0.954 2.145  H10  LMC 31 
LMC H10A H10A H 0 0 N N N N N N 40.300 -19.677 3.272 -1.045 -2.487 1.249  H10A LMC 32 
LMC H10B H10B H 0 0 N N N N N N 38.504 -19.662 3.253 0.333  -1.360 1.295  H10B LMC 33 
LMC H12  H12  H 0 1 N N N N N N 40.661 -19.925 9.195 -2.115 3.266  -1.023 H12  LMC 34 
LMC H12A H12A H 0 0 N N N N N N 41.550 -18.586 8.393 -3.004 3.229  0.519  H12A LMC 35 
LMC H12B H12B H 0 0 N N N N N N 39.771 -18.476 8.615 -1.226 3.297  0.519  H12B LMC 36 
LMC H1   H1   H 0 1 N N N N N N 40.992 -22.172 3.506 -3.427 -2.759 0.005  H1   LMC 37 
LMC H6   H6   H 0 1 N N N N N N 43.241 -22.951 4.153 -5.825 -2.185 0.000  H6   LMC 38 
LMC H5   H5   H 0 1 N N N N N N 44.233 -22.232 6.289 -6.522 0.175  -0.008 H5   LMC 39 
LMC H4   H4   H 0 1 N N N N N N 42.979 -20.724 7.782 -4.839 1.963  -0.011 H4   LMC 40 
LMC H21  H21  H 0 1 N N N N N N 33.489 -19.322 5.000 4.457  -1.996 -0.518 H21  LMC 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LMC C18 C17  SING N N 1  
LMC C18 O1   DOUB N N 2  
LMC C18 H18  SING N N 3  
LMC C17 H17  SING N N 4  
LMC C16 C17  DOUB N E 5  
LMC C16 C15  SING N N 6  
LMC C20 C16  SING N N 7  
LMC C20 H20  SING N N 8  
LMC C20 H20A SING N N 9  
LMC C15 H15  SING N N 10 
LMC C14 C15  DOUB N N 11 
LMC C14 C13  SING N E 12 
LMC C14 H14  SING N N 13 
LMC C13 H13  SING N N 14 
LMC C8  C13  DOUB N N 15 
LMC C8  N9   SING N E 16 
LMC C7  C8   SING N N 17 
LMC C7  C2   SING N N 18 
LMC C11 C7   SING N N 19 
LMC C11 H11  SING N N 20 
LMC C11 H11A SING N N 21 
LMC C11 H11B SING N N 22 
LMC C10 C7   SING N N 23 
LMC C10 H10  SING N N 24 
LMC C10 H10A SING N N 25 
LMC C10 H10B SING N N 26 
LMC C2  C3   SING Y N 27 
LMC C3  C4   DOUB Y N 28 
LMC C3  N9   SING N N 29 
LMC N9  C12  SING N N 30 
LMC C12 H12  SING N N 31 
LMC C12 H12A SING N N 32 
LMC C12 H12B SING N N 33 
LMC C1  C2   DOUB Y N 34 
LMC C1  C6   SING Y N 35 
LMC C1  H1   SING N N 36 
LMC C6  C5   DOUB Y N 37 
LMC C6  H6   SING N N 38 
LMC C5  C4   SING Y N 39 
LMC C5  H5   SING N N 40 
LMC C4  H4   SING N N 41 
LMC C20 H21  SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LMC SMILES           ACDLabs              10.04 "O=C\C=C(\C=C\C=C2\N(c1ccccc1C2(C)C)C)C"                                                                       
LMC SMILES_CANONICAL CACTVS               3.341 "CN1c2ccccc2C(C)(C)/C1=C\C=C\C(/C)=C/C=O"                                                                      
LMC SMILES           CACTVS               3.341 "CN1c2ccccc2C(C)(C)C1=CC=CC(C)=CC=O"                                                                           
LMC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C/C(=C\C=O)/C=C/C=C/1\C(c2ccccc2N1C)(C)C"                                                                     
LMC SMILES           "OpenEye OEToolkits" 1.5.0 "CC(=CC=O)C=CC=C1C(c2ccccc2N1C)(C)C"                                                                           
LMC InChI            InChI                1.03  "InChI=1S/C18H21NO/c1-14(12-13-20)8-7-11-17-18(2,3)15-9-5-6-10-16(15)19(17)4/h5-13H,1-4H3/b8-7+,14-12+,17-11+" 
LMC InChIKey         InChI                1.03  UGINWNVBXWWHCS-RZZAMGAFSA-N                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LMC "SYSTEMATIC NAME" ACDLabs              10.04 "(2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal" 
LMC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2E,4E,6E)-3-methyl-6-(1,3,3-trimethylindol-2-ylidene)hexa-2,4-dienal"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LMC "Create component"     2008-12-09 RCSB 
LMC "Modify aromatic_flag" 2011-06-04 RCSB 
LMC "Modify descriptor"    2011-06-04 RCSB 
LMC "Modify synonyms"      2020-06-05 PDBE 
LMC "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LMC 
_pdbx_chem_comp_synonyms.name         "(2E,4E,6Z)-3-methyl-6-(1,3,3-trimethylindolin-2-ylidene)hexa-2,4-dienal" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LMC 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
