data_O2C
# 
_chem_comp.id                                    O2C 
_chem_comp.name                                  "3'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N3 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-10-31 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        307.197 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     O2C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O2C P      P    P 0 1 N N N 9.887  11.933 21.470 -0.731 5.255  2.799  P      O2C 1  
O2C O1P    O1P  O 0 1 N N N 9.244  13.041 22.197 -1.330 5.696  4.103  O1P    O2C 2  
O2C O2P    O2P  O 0 1 N N N 10.564 12.200 20.171 -1.299 6.012  1.488  O2P    O2C 3  
O2C "O5'"  O5*  O 0 1 N N N 10.939 11.219 22.430 -0.925 3.686  2.453  "O5'"  O2C 4  
O2C "C5'"  C5*  C 0 1 N N N 10.650 11.012 23.810 -0.387 3.192  1.237  "C5'"  O2C 5  
O2C "C4'"  C4*  C 0 1 N N S 11.873 10.491 24.524 -0.692 1.703  1.132  "C4'"  O2C 6  
O2C "O4'"  O4*  O 0 1 N N N 12.190 9.160  24.031 -2.120 1.530  1.107  "O4'"  O2C 7  
O2C "C1'"  C1*  C 0 1 N N R 13.595 8.972  24.041 -2.520 1.128  -0.211 "C1'"  O2C 8  
O2C N1     N1   N 0 1 N N N 14.036 8.625  22.675 -3.631 1.935  -0.629 N1     O2C 9  
O2C C6     C6   C 0 1 N N N 13.328 9.030  21.577 -3.700 3.248  -0.190 C6     O2C 10 
O2C C2     C2   C 0 1 N N N 15.191 7.855  22.521 -4.651 1.429  -1.472 C2     O2C 11 
O2C O2     O2   O 0 1 N N N 15.838 7.541  23.524 -4.618 0.267  -1.880 O2     O2C 12 
O2C N3     N3   N 0 1 N N N 15.575 7.475  21.282 -5.693 2.265  -1.835 N3     O2C 13 
O2C C4     C4   C 0 1 N N N 14.860 7.847  20.218 -5.744 3.502  -1.413 C4     O2C 14 
O2C N4     N4   N 0 1 N N N 15.253 7.413  19.019 -6.788 4.316  -1.785 N4     O2C 15 
O2C C5     C5   C 0 1 N N N 13.704 8.668  20.338 -4.693 4.068  -0.527 C5     O2C 16 
O2C "C2'"  C2*  C 0 1 N N R 14.222 10.249 24.611 -1.308 1.289  -1.113 "C2'"  O2C 17 
O2C "O2'"  O2*  O 0 1 N N N 14.403 10.095 26.008 -1.310 0.329  -2.151 "O2'"  O2C 18 
O2C "C3'"  C3*  C 0 1 N N N 13.151 11.283 24.285 -0.167 1.075  -0.146 "C3'"  O2C 19 
O2C O3P    O3P  O 0 1 N Y N ?      ?      ?      0.869  5.455  2.680  O3P    O2C 20 
O2C HOP2   2HOP H 0 0 N N N 9.914  12.257 19.480 -1.349 6.991  1.489  HOP2   O2C 21 
O2C "H5'1" 1H5* H 0 0 N N N 9.838  10.275 23.901 -0.841 3.733  0.403  "H5'1" O2C 22 
O2C "H5'2" 2H5* H 0 0 N N N 10.344 11.966 24.264 0.693  3.360  1.232  "H5'2" O2C 23 
O2C "H4'"  H4*  H 0 1 N N N 11.602 10.546 25.589 -0.294 1.197  2.016  "H4'"  O2C 24 
O2C "H1'"  H1*  H 0 1 N N N 13.919 8.138  24.681 -2.872 0.091  -0.168 "H1'"  O2C 25 
O2C H6     H6   H 0 1 N N N 12.453 9.650  21.707 -2.892 3.579  0.453  H6     O2C 26 
O2C HN41   1HN4 H 0 0 N N N 16.046 6.827  18.854 -7.355 4.703  -1.070 HN41   O2C 27 
O2C HN42   2HN4 H 0 0 N N N 14.639 7.759  18.309 -6.929 4.481  -2.752 HN42   O2C 28 
O2C H5     H5   H 0 1 N N N 13.150 8.988  19.468 -4.754 5.093  -0.188 H5     O2C 29 
O2C "H2'"  H2*  H 0 1 N N N 15.211 10.514 24.209 -1.257 2.290  -1.556 "H2'"  O2C 30 
O2C "HO'2" 2HO* H 0 0 N N N 15.332 10.061 26.206 -0.440 -0.100 -2.133 "HO'2" O2C 31 
O2C "H3'1" 1H3* H 0 0 N N N 13.223 12.201 24.887 0.001  0.000  -0.001 "H3'1" O2C 32 
O2C "H3'2" 2H3* H 0 0 N N N 13.226 11.645 23.249 0.779  1.503  -0.494 "H3'2" O2C 33 
O2C HOP3   3HOP H 0 0 N N N 0.415  -0.715 -0.469 1.260  6.317  2.937  HOP3   O2C 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O2C P     O1P    DOUB N N 1  
O2C P     O2P    SING N N 2  
O2C P     "O5'"  SING N N 3  
O2C P     O3P    SING N N 4  
O2C O2P   HOP2   SING N N 5  
O2C "O5'" "C5'"  SING N N 6  
O2C "C5'" "C4'"  SING N N 7  
O2C "C5'" "H5'1" SING N N 8  
O2C "C5'" "H5'2" SING N N 9  
O2C "C4'" "O4'"  SING N N 10 
O2C "C4'" "C3'"  SING N N 11 
O2C "C4'" "H4'"  SING N N 12 
O2C "O4'" "C1'"  SING N N 13 
O2C "C1'" N1     SING N N 14 
O2C "C1'" "C2'"  SING N N 15 
O2C "C1'" "H1'"  SING N N 16 
O2C N1    C6     SING N N 17 
O2C N1    C2     SING N N 18 
O2C C6    C5     DOUB N N 19 
O2C C6    H6     SING N N 20 
O2C C2    O2     DOUB N N 21 
O2C C2    N3     SING N N 22 
O2C N3    C4     DOUB N N 23 
O2C C4    N4     SING N N 24 
O2C C4    C5     SING N N 25 
O2C N4    HN41   SING N N 26 
O2C N4    HN42   SING N N 27 
O2C C5    H5     SING N N 28 
O2C "C2'" "O2'"  SING N N 29 
O2C "C2'" "C3'"  SING N N 30 
O2C "C2'" "H2'"  SING N N 31 
O2C "O2'" "HO'2" SING N N 32 
O2C "C3'" "H3'1" SING N N 33 
O2C "C3'" "H3'2" SING N N 34 
O2C O3P   HOP3   SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O2C SMILES           ACDLabs              10.04 "O=C1N=C(N)C=CN1C2OC(CC2O)COP(=O)(O)O"                                                                                                        
O2C SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)C[C@H]2O"                                                                                       
O2C SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)C[CH]2O"                                                                                           
O2C SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H](O[C@H]([C@@H]1O)N2C=CC(=NC2=O)N)COP(=O)(O)O"                                                                                         
O2C SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(OC(C1O)N2C=CC(=NC2=O)N)COP(=O)(O)O"                                                                                                      
O2C InChI            InChI                1.03  "InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-6(13)3-5(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" 
O2C InChIKey         InChI                1.03  SCVBZIYRQRHLNC-SHYZEUOFSA-N                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
O2C "SYSTEMATIC NAME" ACDLabs              10.04 
;3'-deoxy-5'-cytidylic acid
;
O2C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O2C "Create component"    2005-10-31 RCSB 
O2C "Modify linking type" 2011-06-04 RCSB 
O2C "Modify descriptor"   2011-06-04 RCSB 
# 
