data_RPC
# 
_chem_comp.id                                    RPC 
_chem_comp.name                                  
;cytidine 3',5'-bis(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H15 N3 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               C 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-11 
_chem_comp.pdbx_modified_date                    2013-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        403.176 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RPC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I67 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RPC P     P     P 0 1 N N N 52.471 -13.584 -16.866 -2.553 3.523  -0.042 P     RPC 1  
RPC OP1   OP1   O 0 1 N N N 53.391 -14.748 -16.992 -1.760 4.186  1.193  OP1   RPC 2  
RPC "O5'" "O5'" O 0 1 N N N 53.239 -12.426 -16.111 -1.748 2.231  -0.565 "O5'" RPC 3  
RPC "C5'" "C5'" C 0 1 N N N 53.576 -11.243 -16.807 -1.559 1.058  0.228  "C5'" RPC 4  
RPC "C4'" "C4'" C 0 1 N N R 53.186 -10.031 -16.017 -0.754 0.028  -0.568 "C4'" RPC 5  
RPC "C3'" "C3'" C 0 1 N N S 54.234 -8.929  -16.029 -0.637 -1.281 0.237  "C3'" RPC 6  
RPC "O3'" "O3'" O 0 1 N N N 53.575 -7.675  -15.902 -1.224 -2.366 -0.484 "O3'" RPC 7  
RPC "C2'" "C2'" C 0 1 N N R 55.033 -9.228  -14.766 0.889  -1.495 0.392  "C2'" RPC 8  
RPC "O2'" "O2'" O 0 1 N N N 55.761 -8.133  -14.247 1.230  -2.872 0.215  "O2'" RPC 9  
RPC "C1'" "C1'" C 0 1 N N R 53.926 -9.685  -13.820 1.457  -0.632 -0.763 "C1'" RPC 10 
RPC "O4'" "O4'" O 0 1 N N N 53.013 -10.411 -14.622 0.580  0.515  -0.789 "O4'" RPC 11 
RPC N1    N1    N 0 1 N N N 54.380 -10.546 -12.720 2.833  -0.222 -0.473 N1    RPC 12 
RPC C6    C6    C 0 1 N N N 54.294 -11.907 -12.774 3.853  -0.668 -1.258 C6    RPC 13 
RPC C5    C5    C 0 1 N N N 54.712 -12.669 -11.749 5.121  -0.283 -0.980 C5    RPC 14 
RPC C4    C4    C 0 1 N N N 55.239 -12.012 -10.599 5.349  0.572  0.118  C4    RPC 15 
RPC N4    N4    N 0 1 N N N 55.661 -12.727 -9.549  6.627  0.980  0.424  N4    RPC 16 
RPC N3    N3    N 0 1 N N N 55.330 -10.683 -10.537 4.325  0.980  0.855  N3    RPC 17 
RPC C2    C2    C 0 1 N N N 54.901 -9.926  -11.583 3.082  0.596  0.566  C2    RPC 18 
RPC O2    O2    O 0 1 N N N 54.958 -8.685  -11.580 2.157  0.990  1.255  O2    RPC 19 
RPC OP2   OP2   O 0 1 N N N 51.822 -12.970 -18.053 -3.905 3.115  0.402  OP2   RPC 20 
RPC P2    P2    P 0 1 N N N 54.260 -6.358  -16.494 -2.456 -3.233 0.085  P2    RPC 21 
RPC OP4   OP4   O 0 1 N N N 54.332 -5.388  -15.371 -1.985 -4.036 1.398  OP4   RPC 22 
RPC OP5   OP5   O 0 1 N N N 53.213 -5.841  -17.587 -3.575 -2.329 0.435  OP5   RPC 23 
RPC OP6   OP6   O 0 1 N N N 55.485 -6.801  -17.208 -2.941 -4.278 -1.038 OP6   RPC 24 
RPC H1    H1    H 0 1 N N N 53.469 -14.993 -17.907 -0.864 4.478  0.974  H1    RPC 25 
RPC H2    H2    H 0 1 N N N 54.662 -11.225 -16.983 -1.017 1.317  1.138  H2    RPC 26 
RPC H3    H3    H 0 1 N N N 53.048 -11.230 -17.772 -2.529 0.637  0.491  H3    RPC 27 
RPC H4    H4    H 0 1 N N N 52.242 -9.629  -16.413 -1.242 -0.165 -1.523 H4    RPC 28 
RPC H5    H5    H 0 1 N N N 54.868 -8.990  -16.926 -1.110 -1.172 1.213  H5    RPC 29 
RPC H6    H6    H 0 1 N N N 55.705 -10.076 -14.963 1.237  -1.131 1.358  H6    RPC 30 
RPC H7    H7    H 0 1 N N N 55.648 -8.095  -13.304 2.176  -3.056 0.303  H7    RPC 31 
RPC H8    H8    H 0 1 N N N 53.434 -8.794  -13.403 1.410  -1.175 -1.707 H8    RPC 32 
RPC H9    H9    H 0 1 N N N 53.884 -12.379 -13.654 3.653  -1.323 -2.094 H9    RPC 33 
RPC H10   H10   H 0 1 N N N 54.651 -13.746 -11.795 5.944  -0.624 -1.589 H10   RPC 34 
RPC H11   H11   H 0 1 N N N 56.033 -12.263 -8.745  7.374  0.679  -0.117 H11   RPC 35 
RPC H12   H12   H 0 1 N N N 55.604 -13.725 -9.569  6.781  1.567  1.180  H12   RPC 36 
RPC H14   H14   H 0 1 N N N 53.740 -4.664  -15.539 -1.253 -4.649 1.243  H14   RPC 37 
RPC H15   H15   H 0 1 N N N 55.369 -6.678  -18.143 -3.682 -4.835 -0.764 H15   RPC 38 
RPC OP3   OP3   O 0 1 N Y N ?      ?       ?       -2.681 4.596  -1.235 OP3   RPC 39 
RPC H17   H17   H 0 1 N N N ?      ?       ?       -3.156 5.402  -0.991 H17   RPC 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RPC OP2   P     DOUB N N 1  
RPC OP5   P2    DOUB N N 2  
RPC OP6   P2    SING N N 3  
RPC OP1   P     SING N N 4  
RPC P     "O5'" SING N N 5  
RPC "C5'" "O5'" SING N N 6  
RPC "C5'" "C4'" SING N N 7  
RPC P2    "O3'" SING N N 8  
RPC P2    OP4   SING N N 9  
RPC "C3'" "C4'" SING N N 10 
RPC "C3'" "O3'" SING N N 11 
RPC "C3'" "C2'" SING N N 12 
RPC "C4'" "O4'" SING N N 13 
RPC "C2'" "O2'" SING N N 14 
RPC "C2'" "C1'" SING N N 15 
RPC "O4'" "C1'" SING N N 16 
RPC "C1'" N1    SING N N 17 
RPC C6    N1    SING N N 18 
RPC C6    C5    DOUB N N 19 
RPC N1    C2    SING N N 20 
RPC C5    C4    SING N N 21 
RPC C2    O2    DOUB N N 22 
RPC C2    N3    SING N N 23 
RPC C4    N3    DOUB N N 24 
RPC C4    N4    SING N N 25 
RPC OP1   H1    SING N N 26 
RPC "C5'" H2    SING N N 27 
RPC "C5'" H3    SING N N 28 
RPC "C4'" H4    SING N N 29 
RPC "C3'" H5    SING N N 30 
RPC "C2'" H6    SING N N 31 
RPC "O2'" H7    SING N N 32 
RPC "C1'" H8    SING N N 33 
RPC C6    H9    SING N N 34 
RPC C5    H10   SING N N 35 
RPC N4    H11   SING N N 36 
RPC N4    H12   SING N N 37 
RPC OP4   H14   SING N N 38 
RPC OP6   H15   SING N N 39 
RPC P     OP3   SING N N 40 
RPC OP3   H17   SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RPC SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2OP(=O)(O)O"                                                                                                                         
RPC InChI            InChI                1.03  "InChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(14)11-5)8-6(13)7(23-25(18,19)20)4(22-8)3-21-24(15,16)17/h1-2,4,6-8,13H,3H2,(H2,10,11,14)(H2,15,16,17)(H2,18,19,20)/t4-,6-,7-,8-/m1/s1" 
RPC InChIKey         InChI                1.03  MVGIITUCOOTSAP-XVFCMESISA-N                                                                                                                                                  
RPC SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]2O"                                                                                                   
RPC SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]2O"                                                                                                         
RPC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O)O"                                                                                                     
RPC SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)OP(=O)(O)O)O"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RPC "SYSTEMATIC NAME" ACDLabs              12.01 
;cytidine 3',5'-bis(dihydrogen phosphate)
;
RPC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RPC "Create component"      2012-12-11 RCSB 
RPC "Modify parent residue" 2012-12-11 RCSB 
RPC "Initial release"       2013-04-24 RCSB 
# 
