data_TC
#

_chem_comp.id                                   TC
_chem_comp.name                                 "4-azanyl-1-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]pyrimidin-2-one"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C8 H11 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id              C
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-10-23
_chem_comp.pdbx_modified_date                   2019-05-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       292.163
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MU5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TC  "C1'"  C1   C  0  1  N  N  R  -36.757  -19.496  18.406   0.929  -1.702  -0.236  "C1'"  TC   1  
TC  C2     C2   C  0  1  N  N  N  -34.843  -20.556  19.430   1.735   0.590  -0.370  C2     TC   2  
TC  "C2'"  C3   C  0  1  N  N  R  -38.049  -18.846  18.713  -0.194  -1.424   0.781  "C2'"  TC   3  
TC  "C3'"  C4   C  0  1  N  N  S  -37.854  -17.455  18.568  -1.457  -1.226  -0.093  "C3'"  TC   4  
TC  C4     C5   C  0  1  N  N  N  -34.269  -20.217  21.772   3.903   1.194   0.154  C4     TC   5  
TC  "C4'"  C6   C  0  1  N  N  N  -36.511  -17.215  17.945  -1.052  -1.932  -1.412  "C4'"  TC   6  
TC  C5     C7   C  0  1  N  N  N  -35.411  -19.361  21.907   4.203  -0.152   0.452  C5     TC   7  
TC  C6     C8   C  0  1  N  N  N  -36.233  -19.132  20.798   3.231  -1.085   0.322  C6     TC   8  
TC  N1     N1   N  0  1  N  N  N  -35.959  -19.729  19.551   1.990  -0.702  -0.092  N1     TC   9  
TC  N3     N2   N  0  1  N  N  N  -33.997  -20.793  20.567   2.681   1.519  -0.247  N3     TC  10  
TC  N4     N3   N  0  1  N  N  N  -33.407  -20.468  22.912   4.872   2.162   0.277  N4     TC  11  
TC  O1P    O1   O  0  1  N  N  N  -39.044  -15.445  21.518  -4.170   0.506  -0.772  O1P    TC  12  
TC  O2     O2   O  0  1  N  N  N  -34.557  -21.155  18.200   0.620   0.914  -0.744  O2     TC  13  
TC  "O2'"  O3   O  0  1  N  N  N  -38.862  -19.151  17.899  -0.360  -2.538   1.660  "O2'"  TC  14  
TC  O2P    O4   O  0  1  N  N  N  -39.228  -14.905  19.222  -3.414   0.471   1.523  O2P    TC  15  
TC  "O3'"  O5   O  0  1  N  N  N  -37.917  -16.941  19.897  -1.711   0.162  -0.315  "O3'"  TC  16  
TC  "O4'"  O6   O  0  1  N  N  N  -35.950  -18.554  17.507   0.350  -1.614  -1.548  "O4'"  TC  17  
TC  P      P1   P  0  1  N  N  N  -38.297  -15.437  20.241  -3.073   0.888   0.145  P      TC  18  
TC  H1     H1   H  0  1  N  N  N  -36.937  -20.436  17.865   1.337  -2.700  -0.075  H1     TC  19  
TC  H2     H2   H  0  1  N  N  N  -38.337  -19.083  19.748   0.021  -0.519   1.350  H2     TC  20  
TC  H3     H3   H  0  1  N  N  N  -38.640  -17.010  17.940  -2.322  -1.711   0.359  H3     TC  21  
TC  H4     H4   H  0  1  N  N  N  -35.837  -16.750  18.679  -1.195  -3.010  -1.330  H4     TC  22  
TC  H5     H5   H  0  1  N  N  N  -36.617  -16.552  17.074  -1.622  -1.534  -2.251  H5     TC  23  
TC  H6     H6   H  0  1  N  N  N  -35.635  -18.897  22.856   5.193  -0.433   0.779  H6     TC  24  
TC  H7     H7   H  0  1  N  N  N  -37.093  -18.486  20.899   3.436  -2.122   0.545  H7     TC  25  
TC  H8     H8   H  0  1  N  N  N  -32.611  -21.065  22.815   5.764   1.921   0.570  H8     TC  26  
TC  H9     H9   H  0  1  N  N  N  -33.609  -20.044  23.795   4.662   3.087   0.071  H9     TC  27  
TC  H11    H11  H  0  1  N  N  N  -39.689  -18.730  18.103  -1.055  -2.417   2.321  H11    TC  28  
TC  O3P    O3P  O  0  1  N  Y  N  -36.874  -14.707  20.361  -2.870   2.485   0.102  O3P    TC  29  
TC  H10    H10  H  0  1  N  N  N  -36.750  -14.397  21.251  -3.652   2.988   0.367  H10    TC  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TC  "O4'"  "C4'"  SING  N  N   1  
TC  "O4'"  "C1'"  SING  N  N   2  
TC  "O2'"  "C2'"  SING  N  N   3  
TC  "C4'"  "C3'"  SING  N  N   4  
TC  O2     C2     DOUB  N  N   5  
TC  "C1'"  "C2'"  SING  N  N   6  
TC  "C1'"  N1     SING  N  N   7  
TC  "C3'"  "C2'"  SING  N  N   8  
TC  "C3'"  "O3'"  SING  N  N   9  
TC  O2P    P      DOUB  N  N  10  
TC  C2     N1     SING  N  N  11  
TC  C2     N3     SING  N  N  12  
TC  N1     C6     SING  N  N  13  
TC  "O3'"  P      SING  N  N  14  
TC  P      O1P    DOUB  N  N  15  
TC  N3     C4     DOUB  N  N  16  
TC  C6     C5     DOUB  N  N  17  
TC  C4     C5     SING  N  N  18  
TC  C4     N4     SING  N  N  19  
TC  "C1'"  H1     SING  N  N  20  
TC  "C2'"  H2     SING  N  N  21  
TC  "C3'"  H3     SING  N  N  22  
TC  "C4'"  H4     SING  N  N  23  
TC  "C4'"  H5     SING  N  N  24  
TC  C5     H6     SING  N  N  25  
TC  C6     H7     SING  N  N  26  
TC  N4     H8     SING  N  N  27  
TC  N4     H9     SING  N  N  28  
TC  "O2'"  H11    SING  N  N  29  
TC  P      O3P    SING  N  N  30  
TC  O3P    H10    SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TC  InChI             InChI                 1.03   "InChI=1S/C8H11N3O7P/c9-5-1-2-11(8(13)10-5)7-6(12)4(3-17-7)18-19(14,15)16/h1-2,4,6-7,12H,3H2,(H2,9,10,13)(H,14,15,16)/t4-,6+,7+/m0/s1"  
TC  InChIKey          InChI                 1.03   QZXAIPJUSZWLSS-UBKIQSJTSA-N  
TC  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@@H]2OC[C@H](O[P](O)(=O)=O)[C@H]2O"  
TC  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2OC[CH](O[P](O)(=O)=O)[CH]2O"  
TC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1[C@@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)OP(=O)(=O)O"  
TC  SMILES            "OpenEye OEToolkits"  2.0.6  "C1C(C(C(O1)N2C=CC(=NC2=O)N)O)OP(=O)(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          TC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "4-azanyl-1-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]pyrimidin-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TC  "Create component"  2018-10-23  RCSB  
TC  "Initial release"   2019-06-05  RCSB  
##
