data_UDC
#

_chem_comp.id                                   UDC
_chem_comp.name                                 "2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H23 N O10"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;2-(acetylamino)-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-alpha-D-glucopyranose;
N-acetyl-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-alpha-D-glucosamine;
2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-alpha-D-glucose;
2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-D-glucose;
2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-05-31
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       353.322
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UDC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2Z2C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  UDC  "2-(acetylamino)-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-alpha-D-glucopyranose"  PDB  ?  
2  UDC  "N-acetyl-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-alpha-D-glucosamine"                   PDB  ?  
3  UDC  "2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-alpha-D-glucose"            PDB  ?  
4  UDC  "2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-D-glucose"                  PDB  ?  
5  UDC  "2-acetamido-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-glucose"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UDC  C1    C1    C  0  1  N  N  S  4.298  -0.224  -4.483   2.341  -1.515  -0.280  C1    UDC   1  
UDC  O1    O1    O  0  1  N  Y  N  5.221  -1.279  -4.590   2.343  -1.247  -1.684  O1    UDC   2  
UDC  C2    C2    C  0  1  N  N  R  3.513  -0.407  -3.176   0.932  -1.300   0.278  C2    UDC   3  
UDC  N2    N2    N  0  1  N  N  N  4.407  -0.231  -1.984  -0.014  -2.164  -0.433  N2    UDC   4  
UDC  C3    C3    C  0  1  N  N  R  2.820  -1.772  -3.160   0.532   0.166   0.085  C3    UDC   5  
UDC  O3    O3    O  0  1  N  N  N  2.124  -1.866  -1.927  -0.752   0.393   0.669  O3    UDC   6  
UDC  C4    C4    C  0  1  N  N  S  1.909  -1.887  -4.412   1.571   1.061   0.767  C4    UDC   7  
UDC  O4    O4    O  0  1  N  N  N  1.296  -3.177  -4.479   1.247   2.433   0.532  O4    UDC   8  
UDC  C5    C5    C  0  1  N  N  R  2.766  -1.675  -5.701   2.955   0.755   0.190  C5    UDC   9  
UDC  O5    O5    O  0  1  N  N  N  3.365  -0.350  -5.618   3.252  -0.631   0.376  O5    UDC  10  
UDC  C6    C6    C  0  1  N  N  N  2.020  -1.761  -7.021   4.007   1.603   0.908  C6    UDC  11  
UDC  O6    O6    O  0  1  N  N  N  0.770  -1.167  -6.838   5.281   1.404   0.293  O6    UDC  12  
UDC  C7    C7    C  0  1  N  N  N  4.804   0.967  -1.587  -0.192  -3.439  -0.036  C7    UDC  13  
UDC  O7    O7    O  0  1  N  N  N  4.501   2.015  -2.141   0.431  -3.872   0.910  O7    UDC  14  
UDC  C8    C8    C  0  1  N  N  N  5.682   1.021  -0.327  -1.165  -4.327  -0.768  C8    UDC  15  
UDC  CBN   CBN   C  0  1  N  N  S  2.307  -3.066  -1.070  -1.739   0.851  -0.257  CBN   UDC  16  
UDC  CBO   CBO   C  0  1  N  N  N  1.069  -3.172  -0.152  -1.369   2.228  -0.746  CBO   UDC  17  
UDC  OBP   OBP   O  0  1  N  N  N  0.849  -2.174   0.568  -1.518   3.289   0.063  OBP   UDC  18  
UDC  OBQ   OBQ   O  0  1  N  N  N  0.370  -4.211  -0.207  -0.939   2.377  -1.865  OBQ   UDC  19  
UDC  CBR   CBR   C  0  1  N  N  N  2.405  -4.348  -1.918  -1.808  -0.110  -1.446  CBR   UDC  20  
UDC  CBS   CBS   C  0  1  N  N  S  3.478  -2.877  -0.065  -3.102   0.904   0.435  CBS   UDC  21  
UDC  OBT   OBT   O  0  1  N  N  N  3.728  -4.091   0.454  -4.089   1.362  -0.491  OBT   UDC  22  
UDC  CBU   CBU   C  0  1  N  N  N  4.798  -2.565  -0.628  -3.478  -0.494   0.931  CBU   UDC  23  
UDC  OBV   OBV   O  0  1  N  N  N  5.559  -3.740  -0.582  -4.694  -0.424   1.678  OBV   UDC  24  
UDC  H1    H1    H  0  1  N  N  N  4.793   0.758  -4.490   2.647  -2.547  -0.106  H1    UDC  25  
UDC  HO1   HO1   H  0  1  N  Y  N  5.842  -1.231  -3.872   3.206  -1.364  -2.105  HO1   UDC  26  
UDC  H2    H2    H  0  1  N  N  N  2.733   0.368  -3.140   0.920  -1.543   1.341  H2    UDC  27  
UDC  HN2   HN2   H  0  1  N  N  N  4.710  -1.038  -1.478  -0.512  -1.817  -1.190  HN2   UDC  28  
UDC  H3    H3    H  0  1  N  N  N  3.589  -2.556  -3.220   0.494   0.396  -0.980  H3    UDC  29  
UDC  H4    H4    H  0  1  N  N  N  1.143  -1.099  -4.366   1.572   0.866   1.839  H4    UDC  30  
UDC  HO4   HO4   H  0  1  N  Y  N  0.744  -3.226  -5.251   1.879   3.057   0.913  HO4   UDC  31  
UDC  H5    H5    H  0  1  N  N  N  3.564  -2.433  -5.704   2.965   0.989  -0.875  H5    UDC  32  
UDC  H61   H6    H  0  1  N  N  N  2.579  -1.226  -7.803   3.732   2.655   0.843  H61   UDC  33  
UDC  H62   H6A   H  0  1  N  N  N  1.896  -2.814  -7.314   4.059   1.306   1.956  H62   UDC  34  
UDC  HO6   HO6   H  0  1  N  Y  N  0.278  -1.206  -7.650   5.997   1.912   0.698  HO6   UDC  35  
UDC  H81   H8    H  0  1  N  N  N  5.925   2.068  -0.093  -0.648  -4.843  -1.577  H81   UDC  36  
UDC  H82   H8A   H  0  1  N  N  N  5.138   0.574   0.518  -1.579  -5.061  -0.076  H82   UDC  37  
UDC  H83   H8B   H  0  1  N  N  N  6.611   0.460  -0.503  -1.971  -3.721  -1.181  H83   UDC  38  
UDC  HOBP  HOBP  H  0  0  N  N  N  0.060  -2.318   1.078  -1.335   4.159  -0.317  HOBP  UDC  39  
UDC  HBR   HBR   H  0  1  N  N  N  2.540  -5.216  -1.256  -2.076  -1.106  -1.093  HBR   UDC  40  
UDC  HBRA  HBRA  H  0  0  N  N  N  1.482  -4.472  -2.503  -2.561   0.239  -2.152  HBRA  UDC  41  
UDC  HBRB  HBRB  H  0  0  N  N  N  3.264  -4.271  -2.601  -0.837  -0.148  -1.939  HBRB  UDC  42  
UDC  HBS   HBS   H  0  1  N  N  N  3.194  -2.137   0.698  -3.053   1.589   1.282  HBS   UDC  43  
UDC  HOBT  HOBT  H  0  0  N  N  N  4.441  -4.028   1.079  -4.188   0.800  -1.271  HOBT  UDC  44  
UDC  HBU   HBU   H  0  1  N  N  N  4.693  -2.225  -1.669  -3.614  -1.158   0.077  HBU   UDC  45  
UDC  HBUA  HBUA  H  0  0  N  N  N  5.284  -1.778  -0.033  -2.682  -0.880   1.567  HBUA  UDC  46  
UDC  HOBV  HOBV  H  0  0  N  N  N  6.423  -3.573  -0.940  -4.993  -1.276   2.024  HOBV  UDC  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UDC  O5   C1    SING  N  N   1  
UDC  O1   C1    SING  N  N   2  
UDC  C1   C2    SING  N  N   3  
UDC  C1   H1    SING  N  N   4  
UDC  O1   HO1   SING  N  N   5  
UDC  C2   C3    SING  N  N   6  
UDC  C2   N2    SING  N  N   7  
UDC  C2   H2    SING  N  N   8  
UDC  N2   C7    SING  N  N   9  
UDC  N2   HN2   SING  N  N  10  
UDC  C4   C3    SING  N  N  11  
UDC  C3   O3    SING  N  N  12  
UDC  C3   H3    SING  N  N  13  
UDC  O3   CBN   SING  N  N  14  
UDC  C5   C4    SING  N  N  15  
UDC  O4   C4    SING  N  N  16  
UDC  C4   H4    SING  N  N  17  
UDC  O4   HO4   SING  N  N  18  
UDC  C6   C5    SING  N  N  19  
UDC  C5   O5    SING  N  N  20  
UDC  C5   H5    SING  N  N  21  
UDC  C6   O6    SING  N  N  22  
UDC  C6   H61   SING  N  N  23  
UDC  C6   H62   SING  N  N  24  
UDC  O6   HO6   SING  N  N  25  
UDC  O7   C7    DOUB  N  N  26  
UDC  C7   C8    SING  N  N  27  
UDC  C8   H81   SING  N  N  28  
UDC  C8   H82   SING  N  N  29  
UDC  C8   H83   SING  N  N  30  
UDC  CBR  CBN   SING  N  N  31  
UDC  CBN  CBO   SING  N  N  32  
UDC  CBN  CBS   SING  N  N  33  
UDC  OBQ  CBO   DOUB  N  N  34  
UDC  CBO  OBP   SING  N  N  35  
UDC  OBP  HOBP  SING  N  N  36  
UDC  CBR  HBR   SING  N  N  37  
UDC  CBR  HBRA  SING  N  N  38  
UDC  CBR  HBRB  SING  N  N  39  
UDC  CBU  CBS   SING  N  N  40  
UDC  CBS  OBT   SING  N  N  41  
UDC  CBS  HBS   SING  N  N  42  
UDC  OBT  HOBT  SING  N  N  43  
UDC  CBU  OBV   SING  N  N  44  
UDC  CBU  HBU   SING  N  N  45  
UDC  CBU  HBUA  SING  N  N  46  
UDC  OBV  HOBV  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UDC  SMILES            ACDLabs               12.01  "O=C(O)C(OC1C(O)C(OC(O)C1NC(=O)C)CO)(C)C(O)CO"  
UDC  InChI             InChI                 1.03   "InChI=1S/C13H23NO10/c1-5(17)14-8-10(9(19)6(3-15)23-11(8)20)24-13(2,12(21)22)7(18)4-16/h6-11,15-16,18-20H,3-4H2,1-2H3,(H,14,17)(H,21,22)/t6-,7+,8-,9-,10-,11+,13+/m1/s1"  
UDC  InChIKey          InChI                 1.03   NSPVGDAWQINIKU-TXJFNNIZSA-N  
UDC  SMILES_CANONICAL  CACTVS                3.370  "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O[C@@](C)([C@@H](O)CO)C(O)=O"  
UDC  SMILES            CACTVS                3.370  "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O[C](C)([CH](O)CO)C(O)=O"  
UDC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O[C@@](C)([C@H](CO)O)C(=O)O"  
UDC  SMILES            "OpenEye OEToolkits"  1.7.6  "CC(=O)NC1C(C(C(OC1O)CO)O)OC(C)(C(CO)O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UDC  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(acetylamino)-3-O-[(2S,3S)-2-carboxy-3,4-dihydroxybutan-2-yl]-2-deoxy-alpha-D-glucopyranose"  
UDC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  
;(2S,3S)-2-[(2R,3S,4R,5R,6S)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxy-2-methyl-3,4-bis(oxidanyl)buta
noic acid
;
  
#
_pdbx_chem_comp_related.comp_id            UDC
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  UDC  C1   NDG  C1   "Carbohydrate core"  
 2  UDC  C2   NDG  C2   "Carbohydrate core"  
 3  UDC  C3   NDG  C3   "Carbohydrate core"  
 4  UDC  C4   NDG  C4   "Carbohydrate core"  
 5  UDC  C5   NDG  C5   "Carbohydrate core"  
 6  UDC  C6   NDG  C6   "Carbohydrate core"  
 7  UDC  C7   NDG  C7   "Carbohydrate core"  
 8  UDC  C8   NDG  C8   "Carbohydrate core"  
 9  UDC  N2   NDG  N2   "Carbohydrate core"  
10  UDC  O1   NDG  O1   "Carbohydrate core"  
11  UDC  O3   NDG  O3   "Carbohydrate core"  
12  UDC  O4   NDG  O4   "Carbohydrate core"  
13  UDC  O5   NDG  O5   "Carbohydrate core"  
14  UDC  O6   NDG  O6   "Carbohydrate core"  
15  UDC  O7   NDG  O7   "Carbohydrate core"  
16  UDC  H1   NDG  H1   "Carbohydrate core"  
17  UDC  H2   NDG  H2   "Carbohydrate core"  
18  UDC  H3   NDG  H3   "Carbohydrate core"  
19  UDC  H4   NDG  H4   "Carbohydrate core"  
20  UDC  H5   NDG  H5   "Carbohydrate core"  
21  UDC  H61  NDG  H61  "Carbohydrate core"  
22  UDC  H62  NDG  H62  "Carbohydrate core"  
23  UDC  H81  NDG  H81  "Carbohydrate core"  
24  UDC  H82  NDG  H82  "Carbohydrate core"  
25  UDC  H83  NDG  H83  "Carbohydrate core"  
26  UDC  HN2  NDG  HN2  "Carbohydrate core"  
27  UDC  HO1  NDG  HO1  "Carbohydrate core"  
28  UDC  HO4  NDG  HO4  "Carbohydrate core"  
29  UDC  HO6  NDG  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
UDC  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
UDC  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
UDC  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
UDC  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UDC  "Create component"          2007-05-31  RCSB  
UDC  "Modify descriptor"         2011-06-04  RCSB  
UDC  "Other modification"        2013-01-08  RCSB  
UDC  "Other modification"        2020-07-03  RCSB  
UDC  "Modify parent residue"     2020-07-17  RCSB  
UDC  "Modify name"               2020-07-17  RCSB  
UDC  "Modify synonyms"           2020-07-17  RCSB  
UDC  "Modify linking type"       2020-07-17  RCSB  
UDC  "Modify atom id"            2020-07-17  RCSB  
UDC  "Modify component atom id"  2020-07-17  RCSB  
UDC  "Modify leaving atom flag"  2020-07-17  RCSB  
##
