data_UPC
# 
_chem_comp.id                                    UPC 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 N2 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-07-11 
_chem_comp.pdbx_modified_date                    2011-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        466.169 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UPC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SPY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UPC N1     N1     N 0 1 N N N -0.290 6.055  19.427 5.184  -0.648 0.717  N1     UPC 1  
UPC C2     C2     C 0 1 N N N -0.671 5.321  20.570 5.215  -0.822 -0.617 C2     UPC 2  
UPC O2     O2     O 0 1 N N N -1.040 4.017  20.448 4.586  -0.070 -1.335 O2     UPC 3  
UPC N3     N3     N 0 1 N N N -0.671 5.909  21.781 5.934  -1.818 -1.168 N3     UPC 4  
UPC C4     C4     C 0 1 N N N -0.316 7.208  21.907 6.637  -2.662 -0.386 C4     UPC 5  
UPC O4     O4     O 0 1 N N N -0.341 7.767  23.139 7.288  -3.563 -0.883 O4     UPC 6  
UPC C5     C5     C 0 1 N N N 0.068  7.964  20.796 6.613  -2.490 1.019  C5     UPC 7  
UPC C6     C6     C 0 1 N N N 0.073  7.354  19.548 5.884  -1.482 1.545  C6     UPC 8  
UPC PA     PA     P 0 1 N N N 0.051  10.409 16.154 -1.173 1.129  -0.450 PA     UPC 9  
UPC PB     PB     P 0 1 N N N -2.786 9.989  15.316 -3.947 0.063  -0.266 PB     UPC 10 
UPC PG     PG     P 0 1 N N N -3.258 12.543 14.175 -6.510 -1.228 0.473  PG     UPC 11 
UPC "C1'"  "C1'"  C 0 1 N N R -0.332 5.364  18.133 4.398  0.449  1.287  "C1'"  UPC 12 
UPC O1A    O1A    O 0 1 N N N 0.922  11.094 17.157 -1.758 2.611  -0.682 O1A    UPC 13 
UPC O1B    O1B    O 0 1 N N N -3.608 8.985  16.087 -3.760 -0.669 -1.688 O1B    UPC 14 
UPC O1G    O1G    O 0 1 N N N -1.888 12.275 13.599 -7.468 0.040  0.732  O1G    UPC 15 
UPC "C2'"  "C2'"  C 0 1 N N N -1.787 5.462  17.659 4.983  1.802  0.837  "C2'"  UPC 16 
UPC O2A    O2A    O 0 1 N N N 0.385  10.659 14.701 -1.001 0.456  -1.757 O2A    UPC 17 
UPC O2B    O2B    O 0 1 N N N -2.140 9.478  14.060 -4.484 1.425  -0.479 O2B    UPC 18 
UPC O2G    O2G    O 0 1 N N N -4.358 12.840 13.183 -6.728 -1.738 -0.900 O2G    UPC 19 
UPC "C3'"  "C3'"  C 0 1 N N S -1.764 6.651  16.723 3.810  2.498  0.105  "C3'"  UPC 20 
UPC "O3'"  "O3'"  O 0 1 N N N -2.862 6.616  15.803 3.756  3.887  0.434  "O3'"  UPC 21 
UPC C3A    C3A    C 0 1 N N N -1.625 10.730 16.372 -2.335 0.171  0.578  C3A    UPC 22 
UPC O3B    O3B    O 0 1 N N N -3.772 11.180 14.888 -4.973 -0.783 0.642  O3B    UPC 23 
UPC O3G    O3G    O 0 1 N N N -3.234 13.911 15.379 -6.854 -2.386 1.537  O3G    UPC 24 
UPC "C4'"  "C4'"  C 0 1 N N R -0.390 6.505  16.083 2.580  1.746  0.674  "C4'"  UPC 25 
UPC "O4'"  "O4'"  O 0 1 N N N 0.457  6.004  17.130 3.045  0.383  0.804  "O4'"  UPC 26 
UPC "C5'"  "C5'"  C 0 1 N N N 0.196  7.798  15.528 1.403  1.822  -0.301 "C5'"  UPC 27 
UPC "O5'"  "O5'"  O 0 1 N N N 0.155  8.825  16.505 0.250  1.224  0.296  "O5'"  UPC 28 
UPC H5     H5     H 0 1 N N N 0.355  9.000  20.905 7.170  -3.156 1.662  H5     UPC 29 
UPC H6     H6     H 0 1 N N N 0.367  7.916  18.674 5.854  -1.335 2.615  H6     UPC 30 
UPC "H1'"  "H1'"  H 0 1 N N N 0.050  4.341  18.268 4.407  0.384  2.375  "H1'"  UPC 31 
UPC HO1A   HO1A   H 0 0 N N N 1.583  11.606 16.706 -1.896 3.111  0.134  HO1A   UPC 32 
UPC HO1B   HO1B   H 0 0 N N N -3.589 8.148  15.638 -3.410 -1.568 -1.625 HO1B   UPC 33 
UPC HO1G   HO1G   H 0 0 N N N -1.925 12.336 12.652 -7.378 0.427  1.614  HO1G   UPC 34 
UPC "H2'"  "H2'"  H 0 1 N N N -2.108 4.545  17.143 5.295  2.388  1.701  "H2'"  UPC 35 
UPC "H2'A" "H2'A" H 0 0 N N N -2.478 5.621  18.500 5.822  1.648  0.158  "H2'A" UPC 36 
UPC "H3'"  "H3'"  H 0 1 N N N -1.895 7.632  17.204 3.887  2.358  -0.974 "H3'"  UPC 37 
UPC "HO3'" "HO3'" H 0 0 N N N -2.820 7.373  15.230 4.545  4.383  0.177  "HO3'" UPC 38 
UPC H3A    H3A    H 0 1 N N N -1.873 10.390 17.388 -1.939 -0.832 0.735  H3A    UPC 39 
UPC H3AA   H3AA   H 0 0 N N N -1.748 11.816 16.250 -2.461 0.666  1.541  H3AA   UPC 40 
UPC HO3G   HO3G   H 0 0 N N N -3.909 14.541 15.156 -7.766 -2.704 1.492  HO3G   UPC 41 
UPC "H4'"  "H4'"  H 0 1 N N N -0.470 5.842  15.209 2.300  2.148  1.647  "H4'"  UPC 42 
UPC "H5'"  "H5'"  H 0 1 N N N 1.241  7.622  15.235 1.191  2.866  -0.534 "H5'"  UPC 43 
UPC "H5'A" "H5'A" H 0 0 N N N -0.390 8.112  14.652 1.655  1.290  -1.218 "H5'A" UPC 44 
UPC HN3    HN3    H 0 1 N N N -0.934 5.384  22.590 5.945  -1.930 -2.131 HN3    UPC 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UPC "C1'" N1     SING N N 1  
UPC N1    C6     SING N N 2  
UPC N1    C2     SING N N 3  
UPC O2    C2     DOUB N N 4  
UPC C2    N3     SING N N 5  
UPC N3    C4     SING N N 6  
UPC C5    C4     SING N N 7  
UPC C4    O4     DOUB N N 8  
UPC C6    C5     DOUB N N 9  
UPC C5    H5     SING N N 10 
UPC C6    H6     SING N N 11 
UPC O2A   PA     DOUB N N 12 
UPC PA    C3A    SING N N 13 
UPC PA    "O5'"  SING N N 14 
UPC PA    O1A    SING N N 15 
UPC O2B   PB     DOUB N N 16 
UPC O3B   PB     SING N N 17 
UPC PB    O1B    SING N N 18 
UPC PB    C3A    SING N N 19 
UPC O2G   PG     DOUB N N 20 
UPC O1G   PG     SING N N 21 
UPC PG    O3B    SING N N 22 
UPC PG    O3G    SING N N 23 
UPC "O4'" "C1'"  SING N N 24 
UPC "C2'" "C1'"  SING N N 25 
UPC "C1'" "H1'"  SING N N 26 
UPC O1A   HO1A   SING N N 27 
UPC O1B   HO1B   SING N N 28 
UPC O1G   HO1G   SING N N 29 
UPC "C3'" "C2'"  SING N N 30 
UPC "C2'" "H2'"  SING N N 31 
UPC "C2'" "H2'A" SING N N 32 
UPC "O3'" "C3'"  SING N N 33 
UPC "C4'" "C3'"  SING N N 34 
UPC "C3'" "H3'"  SING N N 35 
UPC "O3'" "HO3'" SING N N 36 
UPC C3A   H3A    SING N N 37 
UPC C3A   H3AA   SING N N 38 
UPC O3G   HO3G   SING N N 39 
UPC "C5'" "C4'"  SING N N 40 
UPC "C4'" "O4'"  SING N N 41 
UPC "C4'" "H4'"  SING N N 42 
UPC "C5'" "O5'"  SING N N 43 
UPC "C5'" "H5'"  SING N N 44 
UPC "C5'" "H5'A" SING N N 45 
UPC N3    HN3    SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UPC SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)CC2O"                                                                                                                                 
UPC InChI            InChI                1.03  "InChI=1S/C10H17N2O13P3/c13-6-3-9(12-2-1-8(14)11-10(12)15)24-7(6)4-23-26(16,17)5-27(18,19)25-28(20,21)22/h1-2,6-7,9,13H,3-5H2,(H,16,17)(H,18,19)(H,11,14,15)(H2,20,21,22)/t6-,7+,9+/m0/s1" 
UPC InChIKey         InChI                1.03  CLYYXAGDTAZMBH-LKEWCRSYSA-N                                                                                                                                                                
UPC SMILES_CANONICAL CACTVS               3.370 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                               
UPC SMILES           CACTVS               3.370 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                                    
UPC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@@](=O)(C[P@@](=O)(O)OP(=O)(O)O)O)O"                                                                                                            
UPC SMILES           "OpenEye OEToolkits" 1.7.2 "C1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UPC "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine"                                                     
UPC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UPC "Create component" 2011-07-11 RCSB 
# 
