data_VLC
# 
_chem_comp.id                                    VLC 
_chem_comp.name                                  "2-[6-azanyl-5-[(1R,5S)-8-[2-(2-methoxyethoxy)pyridin-4-yl]-3,8-diazabicyclo[3.2.1]octan-3-yl]pyridazin-3-yl]phenol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H28 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-13 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        448.518 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VLC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QJT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VLC O   O1  O 0 1 N N N N N N 27.982 -12.286 -27.825 -7.283 0.615  0.648  O   VLC 1  
VLC C11 C1  C 0 1 Y N N N N N 27.355 -11.868 -28.951 -6.551 1.600  0.067  C11 VLC 2  
VLC C12 C2  C 0 1 Y N N N N N 27.427 -12.732 -30.041 -7.157 2.789  -0.307 C12 VLC 3  
VLC C13 C3  C 0 1 Y N N N N N 26.853 -12.373 -31.247 -6.411 3.791  -0.898 C13 VLC 4  
VLC C14 C4  C 0 1 Y N N N N N 26.235 -11.151 -31.381 -5.056 3.614  -1.120 C14 VLC 5  
VLC C15 C5  C 0 1 Y N N N N N 26.131 -10.294 -30.296 -4.440 2.436  -0.753 C15 VLC 6  
VLC C10 C6  C 0 1 Y N N N N N 26.735 -10.610 -29.077 -5.181 1.421  -0.151 C10 VLC 7  
VLC C8  C7  C 0 1 Y N N N N N 26.561 -9.696  -27.914 -4.522 0.155  0.251  C8  VLC 8  
VLC C7  C8  C 0 1 Y N N N N N 25.888 -8.478  -28.028 -3.153 -0.022 0.032  C7  VLC 9  
VLC N2  N1  N 0 1 Y N N N N N 26.969 -10.161 -26.726 -5.230 -0.809 0.824  N2  VLC 10 
VLC N3  N2  N 0 1 Y N N N N N 26.774 -9.441  -25.607 -4.704 -1.921 1.190  N3  VLC 11 
VLC C9  C9  C 0 1 Y N N N N N 26.161 -8.261  -25.678 -3.419 -2.184 1.021  C9  VLC 12 
VLC N4  N3  N 0 1 N N N N N N 26.040 -7.604  -24.522 -2.896 -3.407 1.435  N4  VLC 13 
VLC C6  C10 C 0 1 Y N N N N N 25.677 -7.720  -26.894 -2.583 -1.226 0.427  C6  VLC 14 
VLC N1  N4  N 0 1 N N N N N N 25.006 -6.399  -26.991 -1.222 -1.474 0.241  N1  VLC 15 
VLC C5  C11 C 0 1 N N N N N N 25.928 -5.242  -26.730 -0.865 -1.408 -1.183 C5  VLC 16 
VLC C   C12 C 0 1 N N S N N N 25.146 -3.922  -26.736 0.640  -1.682 -1.334 C   VLC 17 
VLC C4  C13 C 0 1 N N N N N N 24.121 -6.195  -28.192 -0.404 -0.558 1.048  C4  VLC 18 
VLC C3  C14 C 0 1 N N R N N N 23.438 -4.812  -28.157 1.082  -0.868 0.803  C3  VLC 19 
VLC C2  C15 C 0 1 N N N N N N 22.754 -4.505  -26.822 1.270  -2.397 0.938  C2  VLC 20 
VLC C1  C16 C 0 1 N N N N N N 23.869 -3.955  -25.890 0.974  -2.939 -0.496 C1  VLC 21 
VLC N   N5  N 0 1 N N N N N N 24.595 -3.837  -28.149 1.354  -0.581 -0.632 N   VLC 22 
VLC C16 C17 C 0 1 Y N N N N N 24.782 -2.588  -28.920 2.720  -0.622 -0.899 C16 VLC 23 
VLC C23 C18 C 0 1 Y N N N N N 24.148 -2.410  -30.147 3.584  0.315  -0.339 C23 VLC 24 
VLC C19 C19 C 0 1 Y N N N N N 24.443 -1.263  -30.886 4.937  0.239  -0.629 C19 VLC 25 
VLC N5  N6  N 0 1 Y N N N N N 25.305 -0.336  -30.501 5.405  -0.708 -1.427 N5  VLC 26 
VLC C18 C20 C 0 1 Y N N N N N 25.933 -0.548  -29.332 4.613  -1.612 -1.974 C18 VLC 27 
VLC C17 C21 C 0 1 Y N N N N N 25.727 -1.656  -28.530 3.257  -1.606 -1.730 C17 VLC 28 
VLC O1  O2  O 0 1 N N N N N N 23.782 -1.110  -32.061 5.791  1.146  -0.090 O1  VLC 29 
VLC C20 C22 C 0 1 N N N N N N 24.524 -1.318  -33.277 7.174  1.015  -0.428 C20 VLC 30 
VLC C21 C23 C 0 1 N N N N N N 23.791 -2.284  -34.166 7.975  2.117  0.268  C21 VLC 31 
VLC O2  O3  O 0 1 N N N N N N 24.046 -3.665  -33.875 7.911  1.931  1.683  O2  VLC 32 
VLC C22 C24 C 0 1 N N N N N N 24.474 -4.417  -35.005 8.631  2.913  2.431  C22 VLC 33 
VLC H15 H1  H 0 1 N N N N N N 28.327 -13.161 -27.960 -7.670 -0.010 0.020  H15 VLC 34 
VLC H16 H2  H 0 1 N N N N N N 27.931 -13.682 -29.944 -8.214 2.932  -0.137 H16 VLC 35 
VLC H17 H3  H 0 1 N N N N N N 26.890 -13.053 -32.085 -6.887 4.715  -1.189 H17 VLC 36 
VLC H18 H4  H 0 1 N N N N N N 25.828 -10.857 -32.337 -4.480 4.402  -1.583 H18 VLC 37 
VLC H19 H5  H 0 1 N N N N N N 25.577 -9.372  -30.395 -3.382 2.301  -0.929 H19 VLC 38 
VLC H12 H6  H 0 1 N N N N N N 25.538 -8.134  -28.990 -2.558 0.752  -0.430 H12 VLC 39 
VLC H14 H7  H 0 1 N N N N N N 26.450 -8.144  -23.787 -3.475 -4.067 1.848  H14 VLC 40 
VLC H13 H8  H 0 1 N N N N N N 26.508 -6.723  -24.589 -1.954 -3.599 1.310  H13 VLC 41 
VLC H11 H9  H 0 1 N N N N N N 26.407 -5.375  -25.749 -1.430 -2.159 -1.736 H11 VLC 42 
VLC H10 H10 H 0 1 N N N N N N 26.699 -5.210  -27.513 -1.098 -0.417 -1.572 H10 VLC 43 
VLC H1  H11 H 0 1 N N N N N N 25.785 -3.063  -26.486 0.939  -1.787 -2.377 H1  VLC 44 
VLC H9  H12 H 0 1 N N N N N N 23.347 -6.977  -28.204 -0.615 0.471  0.758  H9  VLC 45 
VLC H8  H13 H 0 1 N N N N N N 24.732 -6.270  -29.104 -0.638 -0.695 2.104  H8  VLC 46 
VLC H2  H14 H 0 1 N N N N N N 22.765 -4.661  -29.014 1.737  -0.308 1.471  H2  VLC 47 
VLC H7  H15 H 0 1 N N N N N N 22.316 -5.420  -26.397 2.294  -2.630 1.231  H7  VLC 48 
VLC H6  H16 H 0 1 N N N N N N 21.965 -3.751  -26.961 0.566  -2.804 1.664  H6  VLC 49 
VLC H4  H17 H 0 1 N N N N N N 24.003 -4.617  -25.022 0.123  -3.619 -0.475 H4  VLC 50 
VLC H5  H18 H 0 1 N N N N N N 23.613 -2.943  -25.544 1.853  -3.442 -0.900 H5  VLC 51 
VLC H29 H19 H 0 1 N N N N N N 23.445 -3.141  -30.518 3.206  1.090  0.312  H29 VLC 52 
VLC H21 H20 H 0 1 N N N N N N 26.643 0.194   -28.998 5.035  -2.368 -2.619 H21 VLC 53 
VLC H20 H21 H 0 1 N N N N N N 26.292 -1.791  -27.619 2.618  -2.352 -2.178 H20 VLC 54 
VLC H22 H22 H 0 1 N N N N N N 24.642 -0.358  -33.801 7.536  0.041  -0.101 H22 VLC 55 
VLC H23 H23 H 0 1 N N N N N N 25.516 -1.727  -33.034 7.294  1.104  -1.507 H23 VLC 56 
VLC H25 H24 H 0 1 N N N N N N 22.712 -2.102  -34.056 9.014  2.072  -0.058 H25 VLC 57 
VLC H24 H25 H 0 1 N N N N N N 24.091 -2.090  -35.206 7.555  3.089  0.010  H24 VLC 58 
VLC H26 H26 H 0 1 N N N N N N 24.649 -5.461  -34.706 8.225  3.902  2.219  H26 VLC 59 
VLC H28 H27 H 0 1 N N N N N N 23.697 -4.384  -35.783 8.534  2.702  3.496  H28 VLC 60 
VLC H27 H28 H 0 1 N N N N N N 25.407 -3.987  -35.399 9.684  2.885  2.150  H27 VLC 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VLC N   C   SING N N 1  
VLC C   C1  SING N N 2  
VLC C1  C2  SING N N 3  
VLC C2  C3  SING N N 4  
VLC N   C3  SING N N 5  
VLC C3  C4  SING N N 6  
VLC C4  N1  SING N N 7  
VLC C5  N1  SING N N 8  
VLC C   C5  SING N N 9  
VLC N1  C6  SING N N 10 
VLC C6  C7  DOUB Y N 11 
VLC C7  C8  SING Y N 12 
VLC N2  C8  DOUB Y N 13 
VLC N3  N2  SING Y N 14 
VLC C9  N3  DOUB Y N 15 
VLC C6  C9  SING Y N 16 
VLC N4  C9  SING N N 17 
VLC C8  C10 SING N N 18 
VLC C10 C11 DOUB Y N 19 
VLC C11 O   SING N N 20 
VLC C12 C11 SING Y N 21 
VLC C13 C12 DOUB Y N 22 
VLC C14 C13 SING Y N 23 
VLC C15 C14 DOUB Y N 24 
VLC C10 C15 SING Y N 25 
VLC C16 N   SING N N 26 
VLC C16 C17 DOUB Y N 27 
VLC C17 C18 SING Y N 28 
VLC C18 N5  DOUB Y N 29 
VLC N5  C19 SING Y N 30 
VLC O1  C19 SING N N 31 
VLC C20 O1  SING N N 32 
VLC C21 C20 SING N N 33 
VLC O2  C21 SING N N 34 
VLC C22 O2  SING N N 35 
VLC C19 C23 DOUB Y N 36 
VLC C23 C16 SING Y N 37 
VLC O   H15 SING N N 38 
VLC C12 H16 SING N N 39 
VLC C13 H17 SING N N 40 
VLC C14 H18 SING N N 41 
VLC C15 H19 SING N N 42 
VLC C7  H12 SING N N 43 
VLC N4  H14 SING N N 44 
VLC N4  H13 SING N N 45 
VLC C5  H11 SING N N 46 
VLC C5  H10 SING N N 47 
VLC C   H1  SING N N 48 
VLC C4  H9  SING N N 49 
VLC C4  H8  SING N N 50 
VLC C3  H2  SING N N 51 
VLC C2  H7  SING N N 52 
VLC C2  H6  SING N N 53 
VLC C1  H4  SING N N 54 
VLC C1  H5  SING N N 55 
VLC C23 H29 SING N N 56 
VLC C18 H21 SING N N 57 
VLC C17 H20 SING N N 58 
VLC C20 H22 SING N N 59 
VLC C20 H23 SING N N 60 
VLC C21 H25 SING N N 61 
VLC C21 H24 SING N N 62 
VLC C22 H26 SING N N 63 
VLC C22 H28 SING N N 64 
VLC C22 H27 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VLC InChI            InChI                1.06  "InChI=1S/C24H28N6O3/c1-32-10-11-33-23-12-16(8-9-26-23)30-17-6-7-18(30)15-29(14-17)21-13-20(27-28-24(21)25)19-4-2-3-5-22(19)31/h2-5,8-9,12-13,17-18,31H,6-7,10-11,14-15H2,1H3,(H2,25,28)/t17-,18+" 
VLC InChIKey         InChI                1.06  VDJLADNPSHUUOZ-HDICACEKSA-N                                                                                                                                                                        
VLC SMILES_CANONICAL CACTVS               3.385 "COCCOc1cc(ccn1)N2[C@@H]3CC[C@H]2CN(C3)c4cc(nnc4N)c5ccccc5O"                                                                                                                                       
VLC SMILES           CACTVS               3.385 "COCCOc1cc(ccn1)N2[CH]3CC[CH]2CN(C3)c4cc(nnc4N)c5ccccc5O"                                                                                                                                          
VLC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCOc1cc(ccn1)N2[C@@H]3CC[C@H]2CN(C3)c4cc(nnc4N)c5ccccc5O"                                                                                                                                       
VLC SMILES           "OpenEye OEToolkits" 2.0.7 "COCCOc1cc(ccn1)N2C3CCC2CN(C3)c4cc(nnc4N)c5ccccc5O"                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           VLC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[6-azanyl-5-[(1~{R},5~{S})-8-[2-(2-methoxyethoxy)pyridin-4-yl]-3,8-diazabicyclo[3.2.1]octan-3-yl]pyridazin-3-yl]phenol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VLC "Create component" 2023-09-13 PDBE 
VLC "Initial release"  2024-01-17 RCSB 
# 
