data_VYC
# 
_chem_comp.id                                    VYC 
_chem_comp.name                                  "5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(~{E})-2-hydroxyethyliminomethyl]phenoxy]methyl]pyridine-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H25 Cl F N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-13 
_chem_comp.pdbx_modified_date                    2023-07-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        517.979 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VYC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OR1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VYC C15 C1  C  0 1 Y N N -31.680 39.958 -13.845 7.054  0.687  -0.173 C15 VYC 1  
VYC C16 C2  C  0 1 Y N N -32.337 40.454 -12.724 7.485  -0.257 -1.106 C16 VYC 2  
VYC C17 C3  C  0 1 Y N N -32.418 39.780 -11.523 8.800  -0.684 -1.095 C17 VYC 3  
VYC C18 C4  C  0 1 Y N N -31.823 38.544 -11.422 9.686  -0.176 -0.162 C18 VYC 4  
VYC C19 C5  C  0 1 Y N N -31.161 38.002 -12.499 9.262  0.759  0.764  C19 VYC 5  
VYC C20 C6  C  0 1 Y N N -31.088 38.698 -13.695 7.952  1.193  0.763  C20 VYC 6  
VYC C21 C7  C  0 1 Y N N -32.792 39.078 -21.593 -1.435 0.310  0.534  C21 VYC 7  
VYC C22 C8  C  0 1 Y N N -32.450 38.254 -22.657 -2.575 -0.435 0.794  C22 VYC 8  
VYC C23 C9  C  0 1 N N N -34.693 37.784 -23.515 -3.836 1.541  0.400  C23 VYC 9  
VYC C24 C10 C  0 1 Y N N -35.534 36.587 -23.867 -5.267 2.015  0.383  C24 VYC 10 
VYC C25 C11 C  0 1 Y N N -36.370 36.600 -24.974 -6.012 1.948  -0.781 C25 VYC 11 
VYC C26 C12 C  0 1 Y N N -37.146 35.482 -25.288 -7.337 2.400  -0.748 C26 VYC 12 
VYC C27 C13 C  0 1 Y N N -37.051 34.364 -24.449 -7.850 2.897  0.452  C27 VYC 13 
VYC C28 C14 C  0 1 Y N N -35.519 35.429 -23.103 -5.850 2.517  1.533  C28 VYC 14 
VYC O1  O1  O  0 1 N N N -31.511 33.406 -24.307 -5.285 -5.030 -1.685 O1  VYC 15 
VYC C1  C15 C  0 1 N N N -30.611 34.136 -25.126 -6.173 -4.161 -0.978 C1  VYC 16 
VYC C2  C16 C  0 1 N N N -31.264 35.342 -25.743 -5.547 -3.774 0.364  C2  VYC 17 
VYC N1  N1  N  0 1 N N N -31.727 36.299 -24.695 -4.333 -2.981 0.127  N1  VYC 18 
VYC C3  C17 C  0 1 N N N -30.758 37.391 -24.357 -3.704 -2.591 1.396  C3  VYC 19 
VYC C4  C18 C  0 1 Y N N -31.160 38.275 -23.209 -2.465 -1.781 1.114  C4  VYC 20 
VYC C5  C19 C  0 1 Y N N -30.232 39.172 -22.659 -1.221 -2.379 1.174  C5  VYC 21 
VYC C6  C20 C  0 1 Y N N -30.568 40.006 -21.605 -0.083 -1.638 0.916  C6  VYC 22 
VYC C7  C21 C  0 1 Y N N -31.846 39.959 -21.076 -0.187 -0.293 0.595  C7  VYC 23 
VYC O2  O2  O  0 1 N N N -32.160 40.770 -20.024 0.932  0.433  0.335  O2  VYC 24 
VYC C8  C22 C  0 1 N N N -32.569 40.129 -18.798 2.183  -0.252 0.417  C8  VYC 25 
VYC C9  C23 C  0 1 Y N N -32.019 40.776 -17.552 3.302  0.706  0.099  C9  VYC 26 
VYC C10 C24 C  0 1 Y N N -31.436 42.040 -17.579 3.017  2.025  -0.202 C10 VYC 27 
VYC C11 C25 C  0 1 Y N N -30.940 42.625 -16.426 4.039  2.911  -0.494 C11 VYC 28 
VYC C12 C26 C  0 1 Y N N -31.024 41.945 -15.222 5.351  2.482  -0.486 C12 VYC 29 
VYC C13 C27 C  0 1 Y N N -31.598 40.678 -15.148 5.646  1.154  -0.183 C13 VYC 30 
VYC C14 C28 C  0 1 Y N N -32.093 40.110 -16.324 4.612  0.267  0.116  C14 VYC 31 
VYC CL1 CL1 CL 0 0 N N N -32.819 38.523 -16.257 4.970  -1.388 0.500  CL1 VYC 32 
VYC F1  F1  F  0 1 N N N -32.934 41.670 -12.798 6.620  -0.754 -2.017 F1  VYC 33 
VYC O3  O3  O  0 1 N N N -33.354 37.355 -23.198 -3.799 0.153  0.735  O3  VYC 34 
VYC N2  N2  N  0 1 Y N N -36.252 34.336 -23.372 -7.100 2.941  1.533  N2  VYC 35 
VYC C29 C29 C  0 1 N N N -38.021 35.463 -26.438 -8.152 2.354  -1.924 C29 VYC 36 
VYC N3  N3  N  0 1 N N N -38.695 35.421 -27.362 -8.799 2.317  -2.858 N3  VYC 37 
VYC H1  H1  H  0 1 N N N -32.937 40.213 -10.681 9.136  -1.415 -1.816 H1  VYC 38 
VYC H2  H2  H  0 1 N N N -31.876 37.996 -10.493 10.712 -0.512 -0.157 H2  VYC 39 
VYC H3  H3  H  0 1 N N N -30.697 37.031 -12.412 9.959  1.151  1.491  H3  VYC 40 
VYC H4  H4  H  0 1 N N N -30.563 38.259 -14.530 7.624  1.924  1.487  H4  VYC 41 
VYC H5  H5  H  0 1 N N N -33.785 39.036 -21.170 -1.518 1.356  0.280  H5  VYC 42 
VYC H6  H6  H  0 1 N N N -34.664 38.475 -24.370 -3.393 1.689  -0.585 H6  VYC 43 
VYC H7  H7  H  0 1 N N N -35.130 38.296 -22.645 -3.274 2.109  1.141  H7  VYC 44 
VYC H8  H8  H  0 1 N N N -36.421 37.481 -25.597 -5.582 1.558  -1.692 H8  VYC 45 
VYC H9  H9  H  0 1 N N N -37.644 33.491 -24.678 -8.870 3.250  0.493  H9  VYC 46 
VYC H10 H10 H  0 1 N N N -34.876 35.405 -22.236 -5.272 2.566  2.443  H10 VYC 47 
VYC H11 H11 H  0 1 N N N -31.064 32.654 -23.936 -5.618 -5.316 -2.546 H11 VYC 48 
VYC H12 H12 H  0 1 N N N -30.248 33.478 -25.930 -6.349 -3.263 -1.569 H12 VYC 49 
VYC H13 H13 H  0 1 N N N -29.761 34.468 -24.512 -7.119 -4.673 -0.803 H13 VYC 50 
VYC H14 H14 H  0 1 N N N -30.538 35.848 -26.396 -6.260 -3.185 0.940  H14 VYC 51 
VYC H15 H15 H  0 1 N N N -32.129 35.016 -26.339 -5.289 -4.677 0.918  H15 VYC 52 
VYC H16 H16 H  0 1 N N N -29.794 36.924 -24.105 -4.404 -1.993 1.980  H16 VYC 53 
VYC H17 H17 H  0 1 N N N -29.233 39.213 -23.067 -1.138 -3.426 1.424  H17 VYC 54 
VYC H18 H18 H  0 1 N N N -29.837 40.689 -21.198 0.889  -2.108 0.964  H18 VYC 55 
VYC H19 H19 H  0 1 N N N -33.667 40.155 -18.745 2.317  -0.646 1.424  H19 VYC 56 
VYC H20 H20 H  0 1 N N N -32.227 39.084 -18.824 2.194  -1.074 -0.299 H20 VYC 57 
VYC H21 H21 H  0 1 N N N -31.369 42.574 -18.516 1.992  2.366  -0.209 H21 VYC 58 
VYC H22 H22 H  0 1 N N N -30.490 43.606 -16.465 3.810  3.939  -0.729 H22 VYC 59 
VYC H23 H23 H  0 1 N N N -30.638 42.405 -14.325 6.148  3.174  -0.714 H23 VYC 60 
VYC H24 H24 H  0 1 N N N -32.573 36.724 -25.016 -3.683 -3.482 -0.460 H24 VYC 61 
VYC H25 H25 H  0 1 N N N -30.636 38.025 -25.248 -3.433 -3.485 1.958  H25 VYC 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VYC N3  C29 TRIP N N 1  
VYC C29 C26 SING N N 2  
VYC C2  C1  SING N N 3  
VYC C2  N1  SING N N 4  
VYC C26 C25 DOUB Y N 5  
VYC C26 C27 SING Y N 6  
VYC C1  O1  SING N N 7  
VYC C25 C24 SING Y N 8  
VYC N1  C3  SING N N 9  
VYC C27 N2  DOUB Y N 10 
VYC C3  C4  SING N N 11 
VYC C24 C23 SING N N 12 
VYC C24 C28 DOUB Y N 13 
VYC C23 O3  SING N N 14 
VYC N2  C28 SING Y N 15 
VYC C4  C5  DOUB Y N 16 
VYC C4  C22 SING Y N 17 
VYC O3  C22 SING N N 18 
VYC C5  C6  SING Y N 19 
VYC C22 C21 DOUB Y N 20 
VYC C6  C7  DOUB Y N 21 
VYC C21 C7  SING Y N 22 
VYC C7  O2  SING N N 23 
VYC O2  C8  SING N N 24 
VYC C8  C9  SING N N 25 
VYC C10 C9  DOUB Y N 26 
VYC C10 C11 SING Y N 27 
VYC C9  C14 SING Y N 28 
VYC C11 C12 DOUB Y N 29 
VYC C14 CL1 SING N N 30 
VYC C14 C13 DOUB Y N 31 
VYC C12 C13 SING Y N 32 
VYC C13 C15 SING N N 33 
VYC C15 C20 DOUB Y N 34 
VYC C15 C16 SING Y N 35 
VYC C20 C19 SING Y N 36 
VYC F1  C16 SING N N 37 
VYC C16 C17 DOUB Y N 38 
VYC C19 C18 DOUB Y N 39 
VYC C17 C18 SING Y N 40 
VYC C17 H1  SING N N 41 
VYC C18 H2  SING N N 42 
VYC C19 H3  SING N N 43 
VYC C20 H4  SING N N 44 
VYC C21 H5  SING N N 45 
VYC C23 H6  SING N N 46 
VYC C23 H7  SING N N 47 
VYC C25 H8  SING N N 48 
VYC C27 H9  SING N N 49 
VYC C28 H10 SING N N 50 
VYC O1  H11 SING N N 51 
VYC C1  H12 SING N N 52 
VYC C1  H13 SING N N 53 
VYC C2  H14 SING N N 54 
VYC C2  H15 SING N N 55 
VYC C3  H16 SING N N 56 
VYC C5  H17 SING N N 57 
VYC C6  H18 SING N N 58 
VYC C8  H19 SING N N 59 
VYC C8  H20 SING N N 60 
VYC C10 H21 SING N N 61 
VYC C11 H22 SING N N 62 
VYC C12 H23 SING N N 63 
VYC N1  H24 SING N N 64 
VYC C3  H25 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VYC InChI            InChI                1.06  "InChI=1S/C29H25ClFN3O3/c30-29-23(4-3-6-26(29)25-5-1-2-7-27(25)31)19-36-24-9-8-22(17-33-10-11-35)28(13-24)37-18-21-12-20(14-32)15-34-16-21/h1-9,12-13,15-16,33,35H,10-11,17-19H2" 
VYC InChIKey         InChI                1.06  DSELNKYPNSPLEU-UHFFFAOYSA-N                                                                                                                                                       
VYC SMILES_CANONICAL CACTVS               3.385 "OCCNCc1ccc(OCc2cccc(c2Cl)c3ccccc3F)cc1OCc4cncc(c4)C#N"                                                                                                                           
VYC SMILES           CACTVS               3.385 "OCCNCc1ccc(OCc2cccc(c2Cl)c3ccccc3F)cc1OCc4cncc(c4)C#N"                                                                                                                           
VYC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2cccc(c2Cl)COc3ccc(c(c3)OCc4cc(cnc4)C#N)CNCCO)F"                                                                                                                     
VYC SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2cccc(c2Cl)COc3ccc(c(c3)OCc4cc(cnc4)C#N)CNCCO)F"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           VYC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(2-hydroxyethylamino)methyl]phenoxy]methyl]pyridine-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VYC "Create component" 2023-04-13 PDBE 
VYC "Modify formula"   2023-07-12 PDBE 
VYC "Initial release"  2023-08-02 RCSB 
# 
