data_XTC
#

_chem_comp.id                                   XTC
_chem_comp.name                                 "(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-9-nitro-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H21 N3 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        9-NITROTETRACYCLINE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-05-22
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       459.406
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XTC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4AUX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XTC  O92   O92   O  -1  1  N  N  N  22.747  44.517  34.847   7.696   0.012   0.961  O92   XTC   1  
XTC  N9    N9    N   1  1  N  N  N  23.125  43.429  34.403   6.798   0.049   0.139  N9    XTC   2  
XTC  O91   O91   O   0  1  N  N  N  24.024  43.419  33.558   7.061   0.096  -1.049  O91   XTC   3  
XTC  C9    C9    C   0  1  Y  N  N  22.520  42.245  34.870   5.386   0.029   0.584  C9    XTC   4  
XTC  C8    C8    C   0  1  Y  N  N  21.667  42.340  35.968   5.088  -0.031   1.931  C8    XTC   5  
XTC  C7    C7    C   0  1  Y  N  N  21.041  41.211  36.489   3.770  -0.043   2.359  C7    XTC   6  
XTC  C10   C10   C   0  1  Y  N  N  22.735  40.999  34.252   4.363   0.076  -0.352  C10   XTC   7  
XTC  O10   O10   O   0  1  N  N  N  23.547  40.898  33.154   4.653   0.140  -1.676  O10   XTC   8  
XTC  C1A   C1A   C   0  1  Y  N  N  22.092  39.859  34.772   3.031   0.057   0.077  C1A   XTC   9  
XTC  C61   C61   C   0  1  Y  N  N  21.264  39.983  35.881   2.742   0.005   1.442  C61   XTC  10  
XTC  C6    C6    C   0  1  N  N  N  20.600  38.774  36.427   1.311   0.030   1.913  C6    XTC  11  
XTC  C11   C11   C   0  1  N  N  N  22.279  38.503  34.151   1.927   0.108  -0.901  C11   XTC  12  
XTC  O11   O11   O   0  1  N  N  N  22.758  38.478  32.903   2.142   0.399  -2.064  O11   XTC  13  
XTC  C1B   C1B   C   0  1  N  N  N  21.968  37.384  34.851   0.603  -0.190  -0.461  C1B   XTC  14  
XTC  C51   C51   C   0  1  N  N  R  21.586  37.616  36.293   0.421  -0.735   0.936  C51   XTC  15  
XTC  C5    C5    C   0  1  N  N  N  20.920  36.440  36.959  -1.043  -0.607   1.366  C5    XTC  16  
XTC  C12   C12   C   0  1  N  N  N  22.031  36.130  34.332  -0.415   0.028  -1.298  C12   XTC  17  
XTC  O12   O12   O   0  1  N  N  N  22.616  35.876  33.141  -0.135   0.534  -2.516  O12   XTC  18  
XTC  C1C   C1C   C   0  1  N  N  S  21.531  34.916  35.098  -1.855  -0.257  -0.966  C1C   XTC  19  
XTC  O1C   O1C   O   0  1  N  N  N  22.421  33.873  34.690  -2.519  -0.848  -2.086  O1C   XTC  20  
XTC  C1    C1    C   0  1  N  N  N  20.108  34.522  34.795  -2.510   1.060  -0.595  C1    XTC  21  
XTC  O1    O1    O   0  1  N  N  N  19.500  35.183  33.802  -2.043   2.113  -0.977  O1    XTC  22  
XTC  C41   C41   C   0  1  N  N  S  21.648  35.164  36.612  -1.914  -1.192   0.258  C41   XTC  23  
XTC  C4    C4    C   0  1  N  N  S  21.041  34.083  37.507  -3.341  -1.419   0.718  C4    XTC  24  
XTC  N4    N4    N   0  1  N  N  N  22.017  33.243  38.262  -4.026  -2.275  -0.260  N4    XTC  25  
XTC  C43   C43   C   0  1  N  N  N  22.646  33.962  39.400  -3.427  -3.615  -0.299  C43   XTC  26  
XTC  C42   C42   C   0  1  N  N  N  23.081  32.609  37.448  -5.466  -2.350   0.024  C42   XTC  27  
XTC  C3    C3    C   0  1  N  N  N  20.123  33.206  36.712  -4.103  -0.136   0.860  C3    XTC  28  
XTC  O3    O3    O   0  1  N  N  N  19.966  32.003  37.239  -5.199  -0.116   1.634  O3    XTC  29  
XTC  C2    C2    C   0  1  N  N  N  19.513  33.554  35.551  -3.717   1.037   0.231  C2    XTC  30  
XTC  C21   C21   C   0  1  N  N  N  18.248  32.831  35.168  -4.519   2.260   0.390  C21   XTC  31  
XTC  O21   O21   O   0  1  N  N  N  17.808  31.903  35.822  -5.288   2.601  -0.489  O21   XTC  32  
XTC  N21   N21   N   0  1  N  N  N  17.521  33.147  34.098  -4.402   3.003   1.508  N21   XTC  33  
XTC  H8    H8    H   0  1  N  N  N  21.489  43.304  36.421   5.887  -0.069   2.656  H8    XTC  34  
XTC  H7    H7    H   0  1  N  N  N  20.394  41.289  37.350   3.548  -0.090   3.415  H7    XTC  35  
XTC  H10   H10   H   0  1  N  N  N  23.477  40.025  32.787   4.735  -0.724  -2.102  H10   XTC  36  
XTC  H61C  H61C  H   0  0  N  N  N  20.344  38.930  37.485   1.247  -0.433   2.898  H61C  XTC  37  
XTC  H62C  H62C  H   0  0  N  N  N  19.685  38.557  35.857   0.971   1.063   1.979  H62C  XTC  38  
XTC  H51   H51   H   0  1  N  N  N  22.495  37.869  36.858   0.698  -1.790   0.953  H51   XTC  39  
XTC  H51C  H51C  H   0  0  N  N  N  20.936  36.583  38.050  -1.204  -1.159   2.292  H51C  XTC  40  
XTC  H52C  H52C  H   0  0  N  N  N  19.878  36.369  36.614  -1.292   0.444   1.515  H52C  XTC  41  
XTC  H41   H41   H   0  1  N  N  N  22.712  35.278  36.868  -1.500  -2.161  -0.023  H41   XTC  42  
XTC  H12   H12   H   0  1  N  N  N  22.834  36.696  32.714  -0.320  -0.030  -3.279  H12   XTC  43  
XTC  H1C   H1C   H   0  1  N  N  N  22.181  33.063  35.125  -2.462  -0.326  -2.897  H1C   XTC  44  
XTC  H4    H4    H   0  1  N  N  N  20.421  34.604  38.252  -3.325  -1.928   1.682  H4    XTC  45  
XTC  H431  H431  H   0  0  N  N  N  23.351  33.292  39.913  -3.400  -4.031   0.709  H431  XTC  46  
XTC  H432  H432  H   0  0  N  N  N  23.186  34.843  39.023  -4.023  -4.262  -0.942  H432  XTC  47  
XTC  H433  H433  H   0  0  N  N  N  21.866  34.284  40.106  -2.412  -3.548  -0.691  H433  XTC  48  
XTC  H421  H421  H   0  0  N  N  N  23.740  32.017  38.101  -5.920  -1.373  -0.140  H421  XTC  49  
XTC  H422  H422  H   0  0  N  N  N  22.623  31.950  36.695  -5.929  -3.082  -0.638  H422  XTC  50  
XTC  H423  H423  H   0  0  N  N  N  23.670  33.389  36.943  -5.616  -2.651   1.060  H423  XTC  51  
XTC  H3    H3    H   0  1  N  N  N  19.169  31.611  36.903  -5.711   0.704   1.648  H3    XTC  52  
XTC  H211  H211  H   0  0  N  N  N  16.688  32.634  33.890  -3.738   2.772   2.177  H211  XTC  53  
XTC  H212  H212  H   0  0  N  N  N  17.808  33.897  33.502  -4.982   3.769   1.645  H212  XTC  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XTC  O92  N9    SING  N  N   1  
XTC  N9   O91   DOUB  N  N   2  
XTC  N9   C9    SING  N  N   3  
XTC  C9   C8    SING  Y  N   4  
XTC  C9   C10   DOUB  Y  N   5  
XTC  C8   C7    DOUB  Y  N   6  
XTC  C7   C61   SING  Y  N   7  
XTC  C10  O10   SING  N  N   8  
XTC  C10  C1A   SING  Y  N   9  
XTC  C1A  C61   DOUB  Y  N  10  
XTC  C1A  C11   SING  N  N  11  
XTC  C61  C6    SING  N  N  12  
XTC  C6   C51   SING  N  N  13  
XTC  C11  O11   DOUB  N  N  14  
XTC  C11  C1B   SING  N  N  15  
XTC  C1B  C51   SING  N  N  16  
XTC  C1B  C12   DOUB  N  N  17  
XTC  C51  C5    SING  N  N  18  
XTC  C5   C41   SING  N  N  19  
XTC  C12  O12   SING  N  N  20  
XTC  C12  C1C   SING  N  N  21  
XTC  C1C  O1C   SING  N  N  22  
XTC  C1C  C1    SING  N  N  23  
XTC  C1C  C41   SING  N  N  24  
XTC  C1   O1    DOUB  N  N  25  
XTC  C1   C2    SING  N  N  26  
XTC  C41  C4    SING  N  N  27  
XTC  C4   N4    SING  N  N  28  
XTC  C4   C3    SING  N  N  29  
XTC  N4   C43   SING  N  N  30  
XTC  N4   C42   SING  N  N  31  
XTC  C3   O3    SING  N  N  32  
XTC  C3   C2    DOUB  N  N  33  
XTC  C2   C21   SING  N  N  34  
XTC  C21  O21   DOUB  N  N  35  
XTC  C21  N21   SING  N  N  36  
XTC  C8   H8    SING  N  N  37  
XTC  C7   H7    SING  N  N  38  
XTC  O10  H10   SING  N  N  39  
XTC  C6   H61C  SING  N  N  40  
XTC  C6   H62C  SING  N  N  41  
XTC  C51  H51   SING  N  N  42  
XTC  C5   H51C  SING  N  N  43  
XTC  C5   H52C  SING  N  N  44  
XTC  C41  H41   SING  N  N  45  
XTC  O12  H12   SING  N  N  46  
XTC  O1C  H1C   SING  N  N  47  
XTC  C4   H4    SING  N  N  48  
XTC  C43  H431  SING  N  N  49  
XTC  C43  H432  SING  N  N  50  
XTC  C43  H433  SING  N  N  51  
XTC  C42  H421  SING  N  N  52  
XTC  C42  H422  SING  N  N  53  
XTC  C42  H423  SING  N  N  54  
XTC  O3   H3    SING  N  N  55  
XTC  N21  H211  SING  N  N  56  
XTC  N21  H212  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XTC  SMILES            ACDLabs               12.01  "[O-][N+](=O)c2c(O)c3C(=O)C1=C(O)C4(O)C(=O)C(=C(O)C(N(C)C)C4CC1Cc3cc2)C(=O)N"  
XTC  InChI             InChI                 1.03   "InChI=1S/C21H21N3O9/c1-23(2)14-9-6-8-5-7-3-4-10(24(32)33)15(25)11(7)16(26)12(8)18(28)21(9,31)19(29)13(17(14)27)20(22)30/h3-4,8-9,14,25,27-28,31H,5-6H2,1-2H3,(H2,22,30)/t8-,9-,14-,21-/m0/s1"  
XTC  InChIKey          InChI                 1.03   IEJWCNPEOOQYLP-CROFIWJMSA-N  
XTC  SMILES_CANONICAL  CACTVS                3.385  "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4ccc(c(O)c4C(=O)C3=C(O)[C@]2(O)C(=O)C(=C1O)C(N)=O)[N+]([O-])=O"  
XTC  SMILES            CACTVS                3.385  "CN(C)[CH]1[CH]2C[CH]3Cc4ccc(c(O)c4C(=O)C3=C(O)[C]2(O)C(=O)C(=C1O)C(N)=O)[N+]([O-])=O"  
XTC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4ccc(c(c4C(=O)C3=C([C@@]2(C(=O)C(=C1O)C(=O)N)O)O)O)[N+](=O)[O-]"  
XTC  SMILES            "OpenEye OEToolkits"  1.9.2  "CN(C)C1C2CC3Cc4ccc(c(c4C(=O)C3=C(C2(C(=O)C(=C1O)C(=O)N)O)O)O)[N+](=O)[O-]"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XTC  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-9-nitro-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide"  
XTC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(4S,4aS,5aR,12aS)-4-(dimethylamino)-9-nitro-3,10,12,12a-tetrakis(oxidanyl)-1,11-bis(oxidanylidene)-4a,5,5a,6-tetrahydro-4H-tetracene-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XTC  "Create component"   2012-05-22  EBI   
XTC  "Modify descriptor"  2014-09-05  RCSB  
XTC  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XTC
_pdbx_chem_comp_synonyms.name        9-NITROTETRACYCLINE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
