data_XVC
# 
_chem_comp.id                                    XVC 
_chem_comp.name                                  6-azido-6-deoxy-alpha-D-glucopyranose 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H11 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-13 
_chem_comp.pdbx_modified_date                    2024-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        205.169 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XVC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UQV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XVC C1   C1  C 0  1 N N S N N N 211.393 208.342 252.905 -1.142 -1.577 0.276  C1   XVC 1  
XVC C2   C2  C 0  1 N N R N N N 210.072 207.669 253.301 -2.230 -0.513 0.445  C2   XVC 2  
XVC C3   C3  C 0  1 N N S N N N 210.280 206.776 254.518 -1.799 0.766  -0.279 C3   XVC 3  
XVC C4   C4  C 0  1 N N S N N N 211.609 206.032 254.406 -0.447 1.223  0.277  C4   XVC 4  
XVC C5   C5  C 0  1 N N R N N N 212.771 207.017 254.295 0.572  0.092  0.115  C5   XVC 5  
XVC C6   C6  C 0  1 N N N N N N 213.765 206.528 253.238 1.910  0.519  0.722  C6   XVC 6  
XVC N1   N1  N 0  1 N N N N N N 214.697 207.596 252.923 2.916  -0.513 0.462  N1   XVC 7  
XVC N2   N2  N 1  1 N N N N N N 215.424 208.515 252.605 3.841  -0.261 -0.124 N2   XVC 8  
XVC N3   N3  N -1 1 N N N N N N 216.175 209.426 252.319 4.766  -0.009 -0.711 N3   XVC 9  
XVC O2   O1  O 0  1 N N N N N N 209.106 208.624 253.631 -3.455 -0.990 -0.116 O2   XVC 10 
XVC O3   O2  O 0  1 N N N N N N 209.232 205.854 254.583 -2.774 1.788  -0.066 O3   XVC 11 
XVC O4   O3  O 0  1 N N N N N N 211.788 205.257 255.555 0.000  2.375  -0.441 O4   XVC 12 
XVC O5   O4  O 0  1 N N N N N N 212.307 208.294 253.962 0.096  -1.076 0.786  O5   XVC 13 
XVC O1   O5  O 0  1 N Y N N N N 211.192 209.691 252.594 -0.994 -1.893 -1.110 O1   XVC 14 
XVC HC1  H1  H 0  1 N N N N N N 211.800 207.811 252.032 -1.424 -2.476 0.826  HC1  XVC 15 
XVC HC2  H2  H 0  1 N N N N N N 209.729 207.048 252.461 -2.372 -0.303 1.505  HC2  XVC 16 
XVC HC3  H3  H 0  1 N N N N N N 210.300 207.404 255.421 -1.707 0.567  -1.347 HC3  XVC 17 
XVC HC4  H4  H 0  1 N N N N N N 211.590 205.399 253.507 -0.552 1.471  1.333  HC4  XVC 18 
XVC HC5  H5  H 0  1 N N N N N N 213.289 207.047 255.265 0.707  -0.126 -0.944 HC5  XVC 19 
XVC HC62 H6  H 0  0 N N N N N N 213.220 206.236 252.328 2.229  1.460  0.273  HC62 XVC 20 
XVC HC61 H7  H 0  0 N N N N N N 214.318 205.661 253.628 1.795  0.652  1.798  HC61 XVC 21 
XVC HO2  H9  H 0  1 N N N N N N 208.298 208.187 253.873 -3.785 -1.802 0.293  HO2  XVC 22 
XVC HO3  H10 H 0  1 N N N N N N 209.351 205.291 255.339 -3.657 1.562  -0.388 HO3  XVC 23 
XVC HO4  H11 H 0  1 N N N N N N 211.071 204.639 255.636 -0.601 3.130  -0.386 HO4  XVC 24 
XVC H2   H12 H 0  1 N N N N N N 212.021 210.088 252.352 -0.320 -2.562 -1.291 H2   XVC 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XVC N3 N2   DOUB N N 1  
XVC N2 N1   DOUB N N 2  
XVC C1 C2   SING N N 3  
XVC C1 O5   SING N N 4  
XVC N1 C6   SING N N 5  
XVC C6 C5   SING N N 6  
XVC C2 O2   SING N N 7  
XVC C2 C3   SING N N 8  
XVC O5 C5   SING N N 9  
XVC C5 C4   SING N N 10 
XVC C4 C3   SING N N 11 
XVC C4 O4   SING N N 12 
XVC C3 O3   SING N N 13 
XVC C1 O1   SING N N 14 
XVC C1 HC1  SING N N 15 
XVC C2 HC2  SING N N 16 
XVC C3 HC3  SING N N 17 
XVC C4 HC4  SING N N 18 
XVC C5 HC5  SING N N 19 
XVC C6 HC62 SING N N 20 
XVC C6 HC61 SING N N 21 
XVC O2 HO2  SING N N 22 
XVC O3 HO3  SING N N 23 
XVC O4 HO4  SING N N 24 
XVC O1 H2   SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XVC SMILES           ACDLabs              12.01 "OC1C(O)C(C\N=[N+]=[N-])OC(O)C1O"                                                              
XVC InChI            InChI                1.06  "InChI=1S/C6H11N3O5/c7-9-8-1-2-3(10)4(11)5(12)6(13)14-2/h2-6,10-13H,1H2/t2-,3-,4+,5-,6+/m1/s1" 
XVC InChIKey         InChI                1.06  CMLRUUHRGSJVMD-DVKNGEFBSA-N                                                                    
XVC SMILES_CANONICAL CACTVS               3.385 "O[C@H]1O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H](O)[C@H]1O"                                          
XVC SMILES           CACTVS               3.385 "O[CH]1O[CH](CN=[N+]=[N-])[CH](O)[CH](O)[CH]1O"                                                
XVC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)N=[N+]=[N-]"                                     
XVC SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)O)O)O)N=[N+]=[N-]"                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XVC "SYSTEMATIC NAME" ACDLabs              12.01 6-azido-6-deoxy-alpha-D-glucopyranose                                 
XVC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(azidomethyl)oxane-2,3,4,5-tetrol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XVC "Create component" 2023-11-13 RCSB 
XVC "Initial release"  2024-03-27 RCSB 
# 
