data_YSC
#

_chem_comp.id                                   YSC
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-(4-hydroxyphenyl)propanoyl]sulfamate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H23 N5 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-13
_chem_comp.pdbx_modified_date                   2019-04-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       485.468
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YSC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6HB5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YSC  N      N1   N  0  1  N  N  N  -51.877   3.248  -42.057   2.622   0.847   1.327  N      YSC   1  
YSC  CA     C1   C  0  1  N  N  S  -52.611   2.856  -43.274   2.756  -0.317   0.441  CA     YSC   2  
YSC  CB     C2   C  0  1  N  N  N  -52.670   1.310  -43.419   4.174  -0.881   0.549  CB     YSC   3  
YSC  CG     C3   C  0  1  Y  N  N  -51.327   0.626  -43.418   5.159   0.132   0.027  CG     YSC   4  
YSC  CD2    C4   C  0  1  Y  N  N  -50.395   0.886  -44.421   5.504   0.133  -1.312  CD2    YSC   5  
YSC  CE2    C5   C  0  1  Y  N  N  -49.174   0.231  -44.449   6.406   1.061  -1.794  CE2    YSC   6  
YSC  CZ     C6   C  0  1  Y  N  N  -48.859  -0.687  -43.455   6.967   1.994  -0.932  CZ     YSC   7  
YSC  OH     O1   O  0  1  N  N  N  -47.644  -1.307  -43.481   7.855   2.908  -1.404  OH     YSC   8  
YSC  CE1    C7   C  0  1  Y  N  N  -49.778  -0.955  -42.447   6.619   1.991   0.410  CE1    YSC   9  
YSC  CD1    C8   C  0  1  Y  N  N  -51.002  -0.302  -42.436   5.712   1.064   0.886  CD1    YSC  10  
YSC  C      C9   C  0  1  N  N  N  -54.049   3.214  -42.980   1.762  -1.375   0.848  C      YSC  11  
YSC  O      O2   O  0  1  N  N  N  -54.587   3.403  -41.893   1.280  -1.358   1.961  O      YSC  12  
YSC  NAT    N2   N  0  1  N  N  N  -54.802   3.199  -44.095   1.409  -2.339  -0.025  NAT    YSC  13  
YSC  SBI    S1   S  0  1  N  N  N  -56.374   3.376  -44.281   0.317  -3.501   0.422  SBI    YSC  14  
YSC  OAD    O3   O  0  1  N  N  N  -56.903   4.461  -43.532   0.133  -4.337  -0.713  OAD    YSC  15  
YSC  OAE    O4   O  0  1  N  N  N  -56.898   2.063  -44.141   0.746  -3.990   1.686  OAE    YSC  16  
YSC  "O5'"  O5   O  0  1  N  N  N  -56.471   3.730  -45.827  -1.013  -2.801   0.660  "O5'"  YSC  17  
YSC  "C5'"  C10  C  0  1  N  N  N  -55.879   2.817  -46.809  -1.689  -2.413  -0.537  "C5'"  YSC  18  
YSC  "C4'"  C11  C  0  1  N  N  R  -55.267   3.686  -47.881  -3.006  -1.723  -0.179  "C4'"  YSC  19  
YSC  "O4'"  O6   O  0  1  N  N  N  -56.280   4.525  -48.484  -2.752  -0.436   0.426  "O4'"  YSC  20  
YSC  "C1'"  C12  C  0  1  N  N  R  -55.845   5.879  -48.462  -3.978   0.310   0.264  "C1'"  YSC  21  
YSC  "C2'"  C13  C  0  1  N  N  R  -54.892   5.980  -47.276  -4.467  -0.038  -1.160  "C2'"  YSC  22  
YSC  "O2'"  O7   O  0  1  N  N  N  -53.964   7.039  -47.449  -5.891  -0.144  -1.188  "O2'"  YSC  23  
YSC  "C3'"  C14  C  0  1  N  N  S  -54.173   4.638  -47.374  -3.813  -1.406  -1.458  "C3'"  YSC  24  
YSC  "O3'"  O8   O  0  1  N  N  N  -53.106   4.720  -48.304  -4.813  -2.401  -1.679  "O3'"  YSC  25  
YSC  N1     N3   N  0  1  N  N  N  -57.021   6.756  -48.305  -3.720   1.747   0.378  N1     YSC  26  
YSC  C6     C15  C  0  1  N  N  N  -57.896   6.591  -47.250  -4.435   2.496   1.264  C6     YSC  27  
YSC  C5     C16  C  0  1  N  N  N  -58.926   7.438  -47.056  -4.187   3.824   1.360  C5     YSC  28  
YSC  C4     C17  C  0  1  N  N  N  -59.077   8.514  -47.981  -3.194   4.394   0.538  C4     YSC  29  
YSC  N4     N4   N  0  1  N  N  N  -60.112   9.352  -47.878  -2.921   5.741   0.616  N4     YSC  30  
YSC  N3     N5   N  0  1  N  N  N  -58.224   8.685  -49.010  -2.523   3.626  -0.310  N3     YSC  31  
YSC  C2     C18  C  0  1  N  N  N  -57.189   7.815  -49.207  -2.774   2.320  -0.389  C2     YSC  32  
YSC  O2     O9   O  0  1  N  N  N  -56.453   7.883  -50.194  -2.144   1.635  -1.177  O2     YSC  33  
YSC  H1     H1   H  0  1  N  N  N  -51.854   4.245  -41.988   2.797   0.591   2.288  H1     YSC  34  
YSC  H2     H2   H  0  1  N  N  N  -52.337   2.869  -41.254   3.233   1.595   1.036  H2     YSC  35  
YSC  H4     H4   H  0  1  N  N  N  -52.231   3.341  -44.185   2.563  -0.014  -0.588  H4     YSC  36  
YSC  H5     H5   H  0  1  N  N  N  -53.174   1.074  -44.368   4.398  -1.102   1.593  H5     YSC  37  
YSC  H6     H6   H  0  1  N  N  N  -53.259   0.909  -42.581   4.247  -1.796  -0.039  H6     YSC  38  
YSC  H7     H7   H  0  1  N  N  N  -50.628   1.609  -45.188   5.067  -0.593  -1.982  H7     YSC  39  
YSC  H8     H8   H  0  1  N  N  N  -48.469   0.434  -45.242   6.676   1.061  -2.839  H8     YSC  40  
YSC  H9     H9   H  0  1  N  N  N  -47.575  -1.901  -42.743   7.448   3.730  -1.711  H9     YSC  41  
YSC  H10    H10  H  0  1  N  N  N  -49.540  -1.670  -41.674   7.054   2.716   1.083  H10    YSC  42  
YSC  H11    H11  H  0  1  N  N  N  -51.713  -0.518  -41.652   5.437   1.064   1.931  H11    YSC  43  
YSC  H12    H12  H  0  1  N  N  N  -54.293   3.053  -44.943   1.794  -2.352  -0.915  H12    YSC  44  
YSC  H13    H13  H  0  1  N  N  N  -56.655   2.168  -47.242  -1.060  -1.724  -1.102  H13    YSC  45  
YSC  H14    H14  H  0  1  N  N  N  -55.105   2.196  -46.334  -1.894  -3.296  -1.142  H14    YSC  46  
YSC  H15    H15  H  0  1  N  N  N  -54.827   3.035  -48.650  -3.592  -2.350   0.493  H15    YSC  47  
YSC  H16    H16  H  0  1  N  N  N  -55.306   6.132  -49.387  -4.713  -0.003   1.006  H16    YSC  48  
YSC  H17    H17  H  0  1  N  N  N  -55.449   6.058  -46.331  -4.126   0.712  -1.874  H17    YSC  49  
YSC  H18    H18  H  0  1  N  N  N  -53.384   7.079  -46.697  -6.252  -0.361  -2.059  H18    YSC  50  
YSC  H19    H19  H  0  1  N  N  N  -53.826   4.319  -46.380  -3.149  -1.332  -2.319  H19    YSC  51  
YSC  H20    H20  H  0  1  N  N  N  -52.441   5.312  -47.973  -5.350  -2.252  -2.469  H20    YSC  52  
YSC  H21    H21  H  0  1  N  N  N  -57.752   5.767  -46.567  -5.191   2.036   1.883  H21    YSC  53  
YSC  H22    H22  H  0  1  N  N  N  -59.611   7.307  -46.232  -4.742   4.436   2.056  H22    YSC  54  
YSC  H23    H23  H  0  1  N  N  N  -60.236  10.079  -48.553  -3.413   6.300   1.237  H23    YSC  55  
YSC  H24    H24  H  0  1  N  N  N  -60.763   9.252  -47.126  -2.237   6.130   0.049  H24    YSC  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YSC  O2     C2     DOUB  N  N   1  
YSC  C2     N3     SING  N  N   2  
YSC  C2     N1     SING  N  N   3  
YSC  N3     C4     DOUB  N  N   4  
YSC  "O4'"  "C1'"  SING  N  N   5  
YSC  "O4'"  "C4'"  SING  N  N   6  
YSC  "C1'"  N1     SING  N  N   7  
YSC  "C1'"  "C2'"  SING  N  N   8  
YSC  N1     C6     SING  N  N   9  
YSC  "O3'"  "C3'"  SING  N  N  10  
YSC  C4     N4     SING  N  N  11  
YSC  C4     C5     SING  N  N  12  
YSC  "C4'"  "C3'"  SING  N  N  13  
YSC  "C4'"  "C5'"  SING  N  N  14  
YSC  "O2'"  "C2'"  SING  N  N  15  
YSC  "C3'"  "C2'"  SING  N  N  16  
YSC  C6     C5     DOUB  N  N  17  
YSC  "C5'"  "O5'"  SING  N  N  18  
YSC  "O5'"  SBI    SING  N  N  19  
YSC  CE2    CD2    DOUB  Y  N  20  
YSC  CE2    CZ     SING  Y  N  21  
YSC  CD2    CG     SING  Y  N  22  
YSC  SBI    OAE    DOUB  N  N  23  
YSC  SBI    NAT    SING  N  N  24  
YSC  SBI    OAD    DOUB  N  N  25  
YSC  NAT    C      SING  N  N  26  
YSC  OH     CZ     SING  N  N  27  
YSC  CZ     CE1    DOUB  Y  N  28  
YSC  CB     CG     SING  N  N  29  
YSC  CB     CA     SING  N  N  30  
YSC  CG     CD1    DOUB  Y  N  31  
YSC  CA     C      SING  N  N  32  
YSC  CA     N      SING  N  N  33  
YSC  C      O      DOUB  N  N  34  
YSC  CE1    CD1    SING  Y  N  35  
YSC  N      H1     SING  N  N  36  
YSC  N      H2     SING  N  N  37  
YSC  CA     H4     SING  N  N  38  
YSC  CB     H5     SING  N  N  39  
YSC  CB     H6     SING  N  N  40  
YSC  CD2    H7     SING  N  N  41  
YSC  CE2    H8     SING  N  N  42  
YSC  OH     H9     SING  N  N  43  
YSC  CE1    H10    SING  N  N  44  
YSC  CD1    H11    SING  N  N  45  
YSC  NAT    H12    SING  N  N  46  
YSC  "C5'"  H13    SING  N  N  47  
YSC  "C5'"  H14    SING  N  N  48  
YSC  "C4'"  H15    SING  N  N  49  
YSC  "C1'"  H16    SING  N  N  50  
YSC  "C2'"  H17    SING  N  N  51  
YSC  "O2'"  H18    SING  N  N  52  
YSC  "C3'"  H19    SING  N  N  53  
YSC  "O3'"  H20    SING  N  N  54  
YSC  C6     H21    SING  N  N  55  
YSC  C5     H22    SING  N  N  56  
YSC  N4     H23    SING  N  N  57  
YSC  N4     H24    SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YSC  InChI             InChI                 1.03   "InChI=1S/C18H23N5O9S/c19-11(7-9-1-3-10(24)4-2-9)16(27)22-33(29,30)31-8-12-14(25)15(26)17(32-12)23-6-5-13(20)21-18(23)28/h1-6,11-12,14-15,17,24-26H,7-8,19H2,(H,22,27)(H2,20,21,28)/t11-,12+,14+,15+,17+/m0/s1"  
YSC  InChIKey          InChI                 1.03   CKVJPUGSXWTYBR-LMWHNAIISA-N  
YSC  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](Cc1ccc(O)cc1)C(=O)N[S](=O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=NC3=O)N"  
YSC  SMILES            CACTVS                3.385  "N[CH](Cc1ccc(O)cc1)C(=O)N[S](=O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=NC3=O)N"  
YSC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1C[C@@H](C(=O)NS(=O)(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)N)O"  
YSC  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(ccc1CC(C(=O)NS(=O)(=O)OCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O)N)O"  
#
_pdbx_chem_comp_identifier.comp_id          YSC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-(4-hydroxyphenyl)propanoyl]sulfamate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YSC  "Create component"  2018-08-13  EBI   
YSC  "Initial release"   2019-04-17  RCSB  
##
