data_3AD
# 
_chem_comp.id                                    3AD 
_chem_comp.name                                  "3'-DEOXYADENOSINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-08-03 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        251.242 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3AD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1FA0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3AD "O5'"  O5*  O 0 1 N N N 36.856 67.910 103.148 1.704  -1.000 -4.707 "O5'"  3AD 1  
3AD "C5'"  C5*  C 0 1 N N N 36.508 66.640 102.593 0.779  0.069  -4.504 "C5'"  3AD 2  
3AD "C4'"  C4*  C 0 1 N N S 37.680 65.692 102.670 -0.172 -0.290 -3.361 "C4'"  3AD 3  
3AD "O4'"  O4*  O 0 1 N N N 37.299 64.396 102.122 0.563  -0.478 -2.133 "O4'"  3AD 4  
3AD "C3'"  C3*  C 0 1 N N N 38.922 66.134 101.904 -1.133 0.883  -3.070 "C3'"  3AD 5  
3AD "C2'"  C2*  C 0 1 N N R 38.853 65.308 100.622 -1.295 0.864  -1.531 "C2'"  3AD 6  
3AD "O2'"  O2*  O 0 1 N N N 40.143 65.050 100.112 -2.660 0.640  -1.174 "O2'"  3AD 7  
3AD "C1'"  C1*  C 0 1 N N R 38.230 64.009 101.132 -0.409 -0.316 -1.078 "C1'"  3AD 8  
3AD N9     N9   N 0 1 Y N N 37.535 63.186 100.134 0.258  0.002  0.186  N9     3AD 9  
3AD C8     C8   C 0 1 Y N N 36.414 62.417 100.348 1.461  0.628  0.327  C8     3AD 10 
3AD N7     N7   N 0 1 Y N N 36.021 61.745 99.292  1.752  0.750  1.590  N7     3AD 11 
3AD C5     C5   C 0 1 Y N N 36.939 62.098 98.308  0.755  0.218  2.337  C5     3AD 12 
3AD C6     C6   C 0 1 Y N N 37.079 61.715 96.952  0.529  0.059  3.714  C6     3AD 13 
3AD N6     N6   N 0 1 N N N 36.269 60.842 96.339  1.449  0.518  4.640  N6     3AD 14 
3AD N1     N1   N 0 1 Y N N 38.094 62.260 96.243  -0.591 -0.536 4.107  N1     3AD 15 
3AD C2     C2   C 0 1 Y N N 38.914 63.116 96.861  -1.475 -0.977 3.231  C2     3AD 16 
3AD N3     N3   N 0 1 Y N N 38.895 63.546 98.127  -1.303 -0.856 1.932  N3     3AD 17 
3AD C4     C4   C 0 1 Y N N 37.871 62.994 98.808  -0.212 -0.273 1.444  C4     3AD 18 
3AD "HO5'" *HO5 H 0 0 N N N 36.118 68.506 103.099 2.285  -0.733 -5.433 "HO5'" 3AD 19 
3AD "H5'1" 1H5* H 0 0 N N N 35.596 66.213 103.073 0.206  0.233  -5.416 "H5'1" 3AD 20 
3AD "H5'2" 2H5* H 0 0 N N N 36.118 66.734 101.552 1.325  0.978  -4.249 "H5'2" 3AD 21 
3AD "H4'"  H4*  H 0 1 N N N 37.940 65.658 103.753 -0.736 -1.190 -3.607 "H4'"  3AD 22 
3AD "H3'1" 1H3* H 0 0 N N N 39.000 67.234 101.743 -0.695 1.826  -3.397 "H3'1" 3AD 23 
3AD "H3'2" 2H3* H 0 0 N N N 39.877 66.032 102.470 -2.095 0.719  -3.555 "H3'2" 3AD 24 
3AD "H2'"  H2*  H 0 1 N N N 38.292 65.807 99.797  -0.936 1.797  -1.098 "H2'"  3AD 25 
3AD "HO2'" *HO2 H 0 0 N N N 40.100 64.536 99.314  -3.169 1.378  -1.536 "HO2'" 3AD 26 
3AD "H1'"  H1*  H 0 1 N N N 39.063 63.361 101.491 -1.007 -1.221 -0.972 "H1'"  3AD 27 
3AD H8     H8   H 0 1 N N N 35.866 62.344 101.302 2.081  0.971  -0.487 H8     3AD 28 
3AD HN61   1HN6 H 0 0 N N N 36.369 60.566 95.362  1.280  0.407  5.589  HN61   3AD 29 
3AD HN62   2HN6 H 0 0 N N N 35.314 61.181 96.459  2.266  0.948  4.341  HN62   3AD 30 
3AD H2     H2   H 0 1 N N N 39.724 63.527 96.235  -2.373 -1.455 3.594  H2     3AD 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3AD "O5'" "C5'"  SING N N 1  
3AD "O5'" "HO5'" SING N N 2  
3AD "C5'" "C4'"  SING N N 3  
3AD "C5'" "H5'1" SING N N 4  
3AD "C5'" "H5'2" SING N N 5  
3AD "C4'" "O4'"  SING N N 6  
3AD "C4'" "C3'"  SING N N 7  
3AD "C4'" "H4'"  SING N N 8  
3AD "O4'" "C1'"  SING N N 9  
3AD "C3'" "C2'"  SING N N 10 
3AD "C3'" "H3'1" SING N N 11 
3AD "C3'" "H3'2" SING N N 12 
3AD "C2'" "O2'"  SING N N 13 
3AD "C2'" "C1'"  SING N N 14 
3AD "C2'" "H2'"  SING N N 15 
3AD "O2'" "HO2'" SING N N 16 
3AD "C1'" N9     SING N N 17 
3AD "C1'" "H1'"  SING N N 18 
3AD N9    C8     SING Y N 19 
3AD N9    C4     SING Y N 20 
3AD C8    N7     DOUB Y N 21 
3AD C8    H8     SING N N 22 
3AD N7    C5     SING Y N 23 
3AD C5    C6     SING Y N 24 
3AD C5    C4     DOUB Y N 25 
3AD C6    N6     SING N N 26 
3AD C6    N1     DOUB Y N 27 
3AD N6    HN61   SING N N 28 
3AD N6    HN62   SING N N 29 
3AD N1    C2     SING Y N 30 
3AD C2    N3     DOUB Y N 31 
3AD C2    H2     SING N N 32 
3AD N3    C4     SING Y N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3AD SMILES           ACDLabs              10.04 "n2c1c(ncnc1n(c2)C3OC(CC3O)CO)N"                                                                                               
3AD SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)C[C@H]3O"                                                                                    
3AD SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)C[CH]3O"                                                                                        
3AD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H](C[C@H](O3)CO)O)N"                                                                              
3AD SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(CC(O3)CO)O)N"                                                                                           
3AD InChI            InChI                1.03  "InChI=1S/C10H13N5O3/c11-8-7-9(13-3-12-8)15(4-14-7)10-6(17)1-5(2-16)18-10/h3-6,10,16-17H,1-2H2,(H2,11,12,13)/t5-,6+,10+/m0/s1" 
3AD InChIKey         InChI                1.03  OFEZSBMBBKLLBJ-BAJZRUMYSA-N                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3AD "SYSTEMATIC NAME" ACDLabs              10.04 "3'-deoxyadenosine"                                             
3AD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,5S)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolan-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3AD "Create component"  2000-08-03 RCSB 
3AD "Modify descriptor" 2011-06-04 RCSB 
# 
