data_4AD
#

_chem_comp.id                                   4AD
_chem_comp.name                                 "4-AMINO-1,4-DIOXOBUTAN-2-AMINIUM ADENOSINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H21 N7 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ASNAMP
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2005-05-20
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       462.332
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4AD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1X54
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4AD  O2P     O2P   O  0  1  N  N  N  -1.420   8.770  41.940   2.964  -2.612  -0.628  O2P     4AD   1  
4AD  P       P     P  0  1  N  N  R  -2.791   9.305  41.680   2.565  -1.196  -0.470  P       4AD   2  
4AD  O1P     O1P   O  0  1  N  N  N  -3.003  10.783  41.502   2.259  -0.560  -1.917  O1P     4AD   3  
4AD  O3P     O3P   O  0  1  N  N  N  -3.661   8.789  42.943   3.758  -0.377   0.235  O3P     4AD   4  
4AD  C       C     C  0  1  N  N  N  -5.061   9.002  43.156   4.990  -0.394  -0.298  C       4AD   5  
4AD  O       O     O  0  1  N  N  N  -5.754   9.720  42.428   5.203  -1.023  -1.307  O       4AD   6  
4AD  CA      CA    C  0  1  N  N  S  -5.585   8.278  44.348   6.107   0.373   0.362  CA      4AD   7  
4AD  N       N     N  1  1  N  N  N  -6.722   8.992  44.897   7.399  -0.159  -0.089  N       4AD   8  
4AD  CB      CB    C  0  1  N  N  N  -5.958   6.890  43.825   6.004   1.852  -0.016  CB      4AD   9  
4AD  CG      CG    C  0  1  N  N  N  -6.517   6.044  44.941   7.044   2.637   0.740  CG      4AD  10  
4AD  OD1     OD1   O  0  1  N  N  N  -5.828   5.777  45.918   7.794   2.070   1.506  OD1     4AD  11  
4AD  ND2     ND2   N  0  1  N  N  N  -7.772   5.612  44.784   7.141   3.970   0.565  ND2     4AD  12  
4AD  "O5'"   O5*   O  0  1  N  N  N  -3.488   8.579  40.425   1.242  -1.111   0.443  "O5'"   4AD  13  
4AD  "C5'"   C5*   C  0  1  N  N  N  -3.606   7.151  40.388   0.260  -1.948  -0.171  "C5'"   4AD  14  
4AD  "C4'"   C4*   C  0  1  N  N  R  -3.098   6.698  39.026  -1.029  -1.911   0.652  "C4'"   4AD  15  
4AD  "C3'"   C3*   C  0  1  N  N  S  -1.633   7.033  38.740  -2.054  -2.901   0.065  "C3'"   4AD  16  
4AD  "O3'"   O3*   O  0  1  N  N  N  -0.769   6.026  39.284  -2.413  -3.892   1.030  "O3'"   4AD  17  
4AD  "C2'"   C2*   C  0  1  N  N  R  -1.594   7.035  37.229  -3.278  -2.013  -0.283  "C2'"   4AD  18  
4AD  "O2'"   O2*   O  0  1  N  N  N  -1.515   5.674  36.770  -4.498  -2.672   0.061  "O2'"   4AD  19  
4AD  "C1'"   C1*   C  0  1  N  N  R  -2.961   7.572  36.856  -3.045  -0.773   0.618  "C1'"   4AD  20  
4AD  "O4'"   O4*   O  0  1  N  N  N  -3.814   7.367  37.981  -1.612  -0.599   0.588  "O4'"   4AD  21  
4AD  N9      N9    N  0  1  Y  N  N  -2.937   9.004  36.454  -3.719   0.404   0.064  N9      4AD  22  
4AD  C4      C4    C  0  1  Y  N  N  -2.983   9.504  35.230  -5.008   0.798   0.322  C4      4AD  23  
4AD  N3      N3    N  0  1  Y  N  N  -3.056   8.900  34.027  -5.997   0.334   1.079  N3      4AD  24  
4AD  C2      C2    C  0  1  Y  N  N  -3.103   9.668  32.928  -7.156   0.957   1.125  C2      4AD  25  
4AD  N1      N1    N  0  1  Y  N  N  -3.066  11.010  33.029  -7.395   2.060   0.440  N1      4AD  26  
4AD  C6      C6    C  0  1  Y  N  N  -2.974  11.667  34.216  -6.464   2.601  -0.340  C6      4AD  27  
4AD  N6      N6    N  0  1  N  N  N  -2.950  13.024  34.240  -6.724   3.758  -1.055  N6      4AD  28  
4AD  C5      C5    C  0  1  Y  N  N  -2.929  10.906  35.387  -5.211   1.972  -0.422  C5      4AD  29  
4AD  N7      N7    N  0  1  Y  N  N  -2.846  11.241  36.715  -4.059   2.225  -1.090  N7      4AD  30  
4AD  C8      C8    C  0  1  Y  N  N  -2.844  10.003  37.502  -3.183   1.306  -0.806  C8      4AD  31  
4AD  HOP1    1HOP  H  0  0  N  N  N  -3.874  11.123  41.337   2.003   0.361  -1.770  HOP1    4AD  32  
4AD  HA      HA    H  0  1  N  N  N  -4.858   8.202  45.170   6.029   0.268   1.445  HA      4AD  33  
4AD  HN1     1HN   H  0  1  N  N  N  -7.550   8.445  44.773   8.147   0.354   0.353  HN1     4AD  34  
4AD  HN2     2HN   H  0  1  N  N  N  -6.826   9.867  44.424   7.467  -1.135   0.160  HN2     4AD  35  
4AD  HN3     3HN   H  0  1  N  N  N  -6.574   9.156  45.872   7.471  -0.063  -1.091  HN3     4AD  36  
4AD  HB1     1HB   H  0  1  N  N  N  -5.057   6.404  43.424   5.011   2.224   0.239  HB1     4AD  37  
4AD  HB2     2HB   H  0  1  N  N  N  -6.716   6.993  43.034   6.170   1.965  -1.087  HB2     4AD  38  
4AD  HD21    1HD2  H  0  0  N  N  N  -8.366   5.798  44.001   7.811   4.476   1.051  HD21    4AD  39  
4AD  HD22    2HD2  H  0  0  N  N  N  -8.010   5.070  45.590   6.544   4.423  -0.051  HD22    4AD  40  
4AD  "H5'1"  1H5*  H  0  0  N  N  N  -4.650   6.840  40.540   0.057  -1.590  -1.180  "H5'1"  4AD  41  
4AD  "H5'2"  2H5*  H  0  0  N  N  N  -3.005   6.697  41.190   0.633  -2.971  -0.217  "H5'2"  4AD  42  
4AD  "H4'"   H4*   H  0  1  N  N  N  -3.236   5.607  39.050  -0.814  -2.172   1.688  "H4'"   4AD  43  
4AD  "H3'"   H3*   H  0  1  N  N  N  -1.294   7.980  39.186  -1.657  -3.372  -0.835  "H3'"   4AD  44  
4AD  H2      H2    H  0  1  N  N  N  -0.578   5.378  38.616  -3.098  -4.441   0.625  H2      4AD  45  
4AD  "H2'"   H2*   H  0  1  N  N  N  -0.753   7.607  36.810  -3.271  -1.735  -1.337  "H2'"   4AD  46  
4AD  H1      H1    H  0  1  N  N  N  -1.498   5.660  35.820  -4.583  -3.430  -0.533  H1      4AD  47  
4AD  "H1'"   H1*   H  0  1  N  N  N  -3.332   7.034  35.971  -3.388  -0.968   1.634  "H1'"   4AD  48  
4AD  H3      H3    H  0  1  N  N  N  -3.171   9.206  31.954  -7.940   0.552   1.747  H3      4AD  49  
4AD  HN61    1HN6  H  0  0  N  N  N  -2.892  13.589  35.063  -6.037   4.143  -1.621  HN61    4AD  50  
4AD  HN62    2HN6  H  0  0  N  N  N  -3.000  13.367  33.302  -7.593   4.183  -0.990  HN62    4AD  51  
4AD  H8      H8    H  0  1  N  N  N  -2.788   9.871  38.572  -2.179   1.264  -1.201  H8      4AD  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4AD  O2P    P       DOUB  N  N   1  
4AD  P      O1P     SING  N  N   2  
4AD  P      O3P     SING  N  N   3  
4AD  P      "O5'"   SING  N  N   4  
4AD  O1P    HOP1    SING  N  N   5  
4AD  O3P    C       SING  N  N   6  
4AD  C      O       DOUB  N  N   7  
4AD  C      CA      SING  N  N   8  
4AD  CA     N       SING  N  N   9  
4AD  CA     CB      SING  N  N  10  
4AD  CA     HA      SING  N  N  11  
4AD  N      HN1     SING  N  N  12  
4AD  N      HN2     SING  N  N  13  
4AD  N      HN3     SING  N  N  14  
4AD  CB     CG      SING  N  N  15  
4AD  CB     HB1     SING  N  N  16  
4AD  CB     HB2     SING  N  N  17  
4AD  CG     OD1     DOUB  N  N  18  
4AD  CG     ND2     SING  N  N  19  
4AD  ND2    HD21    SING  N  N  20  
4AD  ND2    HD22    SING  N  N  21  
4AD  "O5'"  "C5'"   SING  N  N  22  
4AD  "C5'"  "C4'"   SING  N  N  23  
4AD  "C5'"  "H5'1"  SING  N  N  24  
4AD  "C5'"  "H5'2"  SING  N  N  25  
4AD  "C4'"  "C3'"   SING  N  N  26  
4AD  "C4'"  "O4'"   SING  N  N  27  
4AD  "C4'"  "H4'"   SING  N  N  28  
4AD  "C3'"  "O3'"   SING  N  N  29  
4AD  "C3'"  "C2'"   SING  N  N  30  
4AD  "C3'"  "H3'"   SING  N  N  31  
4AD  "O3'"  H2      SING  N  N  32  
4AD  "C2'"  "O2'"   SING  N  N  33  
4AD  "C2'"  "C1'"   SING  N  N  34  
4AD  "C2'"  "H2'"   SING  N  N  35  
4AD  "O2'"  H1      SING  N  N  36  
4AD  "C1'"  "O4'"   SING  N  N  37  
4AD  "C1'"  N9      SING  N  N  38  
4AD  "C1'"  "H1'"   SING  N  N  39  
4AD  N9     C4      SING  Y  N  40  
4AD  N9     C8      SING  Y  N  41  
4AD  C4     N3      SING  Y  N  42  
4AD  C4     C5      DOUB  Y  N  43  
4AD  N3     C2      DOUB  Y  N  44  
4AD  C2     N1      SING  Y  N  45  
4AD  C2     H3      SING  N  N  46  
4AD  N1     C6      DOUB  Y  N  47  
4AD  C6     N6      SING  N  N  48  
4AD  C6     C5      SING  Y  N  49  
4AD  N6     HN61    SING  N  N  50  
4AD  N6     HN62    SING  N  N  51  
4AD  C5     N7      SING  Y  N  52  
4AD  N7     C8      DOUB  Y  N  53  
4AD  C8     H8      SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4AD  SMILES            ACDLabs               10.04  "O=C(N)CC(C(=O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)[NH3+]"  
4AD  SMILES_CANONICAL  CACTVS                3.341  "NC(=O)C[C@H]([NH3+])C(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
4AD  SMILES            CACTVS                3.341  "NC(=O)C[CH]([NH3+])C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
4AD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OC(=O)[C@H](CC(=O)N)[NH3+])O)O)N"  
4AD  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)C(CC(=O)N)[NH3+])O)O)N"  
4AD  InChI             InChI                 1.03   "InChI=1S/C14H20N7O9P/c15-5(1-7(16)22)14(25)30-31(26,27)28-2-6-9(23)10(24)13(29-6)21-4-20-8-11(17)18-3-19-12(8)21/h3-6,9-10,13,23-24H,1-2,15H2,(H2,16,22)(H,26,27)(H2,17,18,19)/p+1/t5-,6+,9+,10+,13+/m0/s1"  
4AD  InChIKey          InChI                 1.03   BZHVCXQAFQWXPZ-VWJPMABRSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4AD  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-[(R)-{[(2S)-4-amino-2-ammonio-4-oxobutanoyl]oxy}(hydroxy)phosphoryl]adenosine"  
4AD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2S)-4-amino-1-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-1,4-dioxo-butan-2-yl]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4AD  "Create component"   2005-05-20  RCSB  
4AD  "Modify descriptor"  2011-06-04  RCSB  
4AD  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4AD
_pdbx_chem_comp_synonyms.name        ASNAMP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
