data_5CD
# 
_chem_comp.id                                    5CD 
_chem_comp.name                                  "5'-CHLORO-5'-DEOXYADENOSINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 Cl N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-09-30 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        285.687 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5CD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2C2W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5CD N9     N9   N  0 1 Y N N 21.871 33.424 -30.170 0.710  0.303  0.048  N9     5CD 1  
5CD C8     C8   C  0 1 Y N N 20.885 32.567 -30.430 0.847  1.428  0.805  C8     5CD 2  
5CD N7     N7   N  0 1 Y N N 20.954 32.192 -31.708 2.107  1.722  0.942  N7     5CD 3  
5CD C5     C5   C  0 1 Y N N 21.990 32.823 -32.255 2.858  0.802  0.288  C5     5CD 4  
5CD C4     C4   C  0 1 Y N N 22.578 33.604 -31.277 1.970  -0.116 -0.298 C4     5CD 5  
5CD N3     N3   N  0 1 Y N N 23.659 34.344 -31.562 2.461  -1.126 -1.008 N3     5CD 6  
5CD C2     C2   C  0 1 Y N N 24.164 34.335 -32.786 3.760  -1.265 -1.167 C2     5CD 7  
5CD N1     N1   N  0 1 Y N N 23.619 33.602 -33.748 4.633  -0.425 -0.640 N1     5CD 8  
5CD C6     C6   C  0 1 Y N N 22.536 32.837 -33.525 4.235  0.615  0.085  C6     5CD 9  
5CD N6     N6   N  0 1 N N N 21.997 32.097 -34.498 5.157  1.490  0.633  N6     5CD 10 
5CD "O2'"  O2*  O  0 1 N N N 21.175 36.265 -28.577 -0.528 -2.735 0.191  "O2'"  5CD 11 
5CD "C2'"  C2*  C  0 1 N N R 20.915 34.863 -28.440 -0.911 -1.450 0.687  "C2'"  5CD 12 
5CD "C3'"  C3*  C  0 1 N N S 20.703 34.481 -26.965 -2.450 -1.355 0.815  "C3'"  5CD 13 
5CD "O3'"  O3*  O  0 1 N N N 20.685 35.658 -26.147 -3.064 -2.577 0.399  "O3'"  5CD 14 
5CD "C4'"  C4*  C  0 1 N N S 21.946 33.652 -26.625 -2.835 -0.203 -0.139 "C4'"  5CD 15 
5CD "C5'"  C5*  C  0 1 N N N 21.607 32.573 -25.574 -3.982 0.620  0.451  "C5'"  5CD 16 
5CD CL     CL   CL 0 0 N N N 20.258 31.540 -26.142 -4.447 1.921  -0.707 CL     5CD 17 
5CD "O4'"  O4*  O  0 1 N N N 22.297 33.036 -27.879 -1.641 0.602  -0.247 "O4'"  5CD 18 
5CD "C1'"  C1*  C  0 1 N N R 22.158 34.067 -28.866 -0.551 -0.342 -0.327 "C1'"  5CD 19 
5CD H8     H8   H  0 1 N N N 20.131 32.222 -29.703 0.030  1.994  1.228  H8     5CD 20 
5CD H2     H2   H  0 1 N N N 25.053 34.948 -33.010 4.126  -2.097 -1.750 H2     5CD 21 
5CD H6N1   1H6N H  0 0 N N N 22.400 32.107 -35.435 6.106  1.348  0.489  H6N1   5CD 22 
5CD H6N2   2H6N H  0 0 N N N 21.175 31.517 -34.329 4.854  2.248  1.157  H6N2   5CD 23 
5CD "H2'"  H2*  H  0 1 N N N 20.406 36.757 -28.314 -0.833 -3.386 0.838  "H2'"  5CD 24 
5CD HA     HA   H  0 1 N N N 20.031 34.567 -29.052 -0.435 -1.256 1.648  HA     5CD 25 
5CD "H3'"  H3*  H  0 1 N N N 19.771 33.883 -26.833 -2.735 -1.115 1.839  "H3'"  5CD 26 
5CD HB     HB   H  0 1 N N N 20.554 35.422 -25.236 -4.020 -2.437 0.441  HB     5CD 27 
5CD "H4'"  H4*  H  0 1 N N N 22.771 34.309 -26.264 -3.116 -0.597 -1.116 "H4'"  5CD 28 
5CD "H5'1" 1H5* H  0 0 N N N 21.393 33.021 -24.576 -4.839 -0.029 0.633  "H5'1" 5CD 29 
5CD "H5'2" 2H5* H  0 0 N N N 22.503 31.969 -25.298 -3.660 1.068  1.391  "H5'2" 5CD 30 
5CD "H1'"  H1*  H  0 1 N N N 23.065 34.714 -28.916 -0.481 -0.756 -1.333 "H1'"  5CD 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5CD N9    C8     SING Y N 1  
5CD N9    C4     SING Y N 2  
5CD N9    "C1'"  SING N N 3  
5CD C8    N7     DOUB Y N 4  
5CD C8    H8     SING N N 5  
5CD N7    C5     SING Y N 6  
5CD C5    C4     DOUB Y N 7  
5CD C5    C6     SING Y N 8  
5CD C4    N3     SING Y N 9  
5CD N3    C2     DOUB Y N 10 
5CD C2    N1     SING Y N 11 
5CD C2    H2     SING N N 12 
5CD N1    C6     DOUB Y N 13 
5CD C6    N6     SING N N 14 
5CD N6    H6N1   SING N N 15 
5CD N6    H6N2   SING N N 16 
5CD "O2'" "C2'"  SING N N 17 
5CD "O2'" "H2'"  SING N N 18 
5CD "C2'" "C3'"  SING N N 19 
5CD "C2'" "C1'"  SING N N 20 
5CD "C2'" HA     SING N N 21 
5CD "C3'" "O3'"  SING N N 22 
5CD "C3'" "C4'"  SING N N 23 
5CD "C3'" "H3'"  SING N N 24 
5CD "O3'" HB     SING N N 25 
5CD "C4'" "C5'"  SING N N 26 
5CD "C4'" "O4'"  SING N N 27 
5CD "C4'" "H4'"  SING N N 28 
5CD "C5'" CL     SING N N 29 
5CD "C5'" "H5'1" SING N N 30 
5CD "C5'" "H5'2" SING N N 31 
5CD "O4'" "C1'"  SING N N 32 
5CD "C1'" "H1'"  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5CD SMILES           ACDLabs              10.04 "ClCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"                                                                                                       
5CD SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CCl)[C@@H](O)[C@H]3O"                                                                                     
5CD SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CCl)[CH](O)[CH]3O"                                                                                           
5CD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CCl)O)O)N"                                                                               
5CD SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CCl)O)O)N"                                                                                                 
5CD InChI            InChI                1.03  "InChI=1S/C10H12ClN5O3/c11-1-4-6(17)7(18)10(19-4)16-3-15-5-8(12)13-2-14-9(5)16/h2-4,6-7,10,17-18H,1H2,(H2,12,13,14)/t4-,6-,7-,10-/m1/s1" 
5CD InChIKey         InChI                1.03  IYSNPOMTKFZDHZ-KQYNXXCUSA-N                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5CD "SYSTEMATIC NAME" ACDLabs              10.04 "5'-chloro-5'-deoxyadenosine"                                          
5CD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(chloromethyl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5CD "Create component"  2005-09-30 EBI  
5CD "Modify descriptor" 2011-06-04 RCSB 
# 
