data_5FD
#

_chem_comp.id                                   5FD
_chem_comp.name                                 "5'-FLUORO-5'-DEOXYADENOSINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H12 F N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-12-16
_chem_comp.pdbx_modified_date                   2022-06-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       269.232
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5FD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1RQR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5FD  "O2'"   "O2'"   O  0  1  N  Y  N  16.916  28.183  63.306  -0.835   2.369  -0.732  "O2'"   5FD   1  
5FD  "C2'"   "C2'"   C  0  1  N  N  R  17.104  29.609  63.373  -1.363   1.042  -0.786  "C2'"   5FD   2  
5FD  "C3'"   "C3'"   C  0  1  N  N  S  17.208  30.069  64.832  -2.895   1.048  -0.567  "C3'"   5FD   3  
5FD  "O3'"   "O3'"   O  0  1  N  N  N  17.396  28.938  65.704  -3.303   2.254   0.082  "O3'"   5FD   4  
5FD  "C4'"   "C4'"   C  0  1  N  N  S  15.826  30.690  65.063  -3.151  -0.168   0.345  "C4'"   5FD   5  
5FD  "C5'"   "C5'"   C  0  1  N  N  N  15.812  31.813  66.044  -4.117  -1.137  -0.340  "C5'"   5FD   6  
5FD  F19     F19     F  0  1  N  N  N  15.919  31.338  67.310  -4.432  -2.180   0.539  F19     5FD   7  
5FD  "O4'"   "O4'"   O  0  1  N  N  N  15.555  31.316  63.825  -1.885  -0.812   0.563  "O4'"   5FD   8  
5FD  "C1'"   "C1'"   C  0  1  N  N  R  15.840  30.342  62.869  -0.866   0.200   0.417  "C1'"   5FD   9  
5FD  N9      N9      N  0  1  Y  N  N  16.116  31.051  61.656   0.431  -0.412   0.117  N9      5FD  10  
5FD  C8      C8      C  0  1  Y  N  N  17.149  31.877  61.425   0.636  -1.669  -0.367  C8      5FD  11  
5FD  N7      N7      N  0  1  Y  N  N  17.099  32.351  60.184   1.911  -1.885  -0.516  N7      5FD  12  
5FD  C5      C5      C  0  1  Y  N  N  16.026  31.797  59.632   2.602  -0.783  -0.139  C5      5FD  13  
5FD  C4      C4      C  0  1  Y  N  N  15.388  30.977  60.565   1.661   0.177   0.267  C4      5FD  14  
5FD  N3      N3      N  0  1  Y  N  N  14.266  30.284  60.284   2.088   1.365   0.683  N3      5FD  15  
5FD  C2      C2      C  0  1  Y  N  N  13.706  30.368  59.092   3.374   1.643   0.714  C2      5FD  16  
5FD  N1      N1      N  0  1  Y  N  N  14.294  31.181  58.119   4.296   0.774   0.339  N1      5FD  17  
5FD  C6      C6      C  0  1  Y  N  N  15.480  31.910  58.379   3.964  -0.441  -0.084  C6      5FD  18  
5FD  N6      N6      N  0  1  N  N  N  16.068  32.685  57.469   4.937  -1.344  -0.475  N6      5FD  19  
5FD  HO2     HO2     H  0  1  N  N  N  16.853  27.914  62.397  -1.187   2.960  -1.412  HO2     5FD  20  
5FD  "H2'"   "H2'"   H  0  1  N  N  N  17.987  29.934  62.803  -1.107   0.562  -1.730  "H2'"   5FD  21  
5FD  "H3''"  "H3''"  H  0  0  N  N  N  18.001  30.822  64.950  -3.417   0.932  -1.516  "H3''"  5FD  22  
5FD  HO3     HO3     H  0  1  N  N  N  17.459  29.238  66.603  -4.255   2.311   0.245  HO3     5FD  23  
5FD  "H4'"   "H4'"   H  0  1  N  N  N  15.086  29.918  65.322  -3.570   0.163   1.295  "H4'"   5FD  24  
5FD  "H5'1"  "H5'1"  H  0  0  N  N  N  16.657  32.485  65.837  -5.028  -0.608  -0.617  "H5'1"  5FD  25  
5FD  "H5'2"  "H5'2"  H  0  0  N  N  N  14.868  32.369  65.944  -3.648  -1.546  -1.235  "H5'2"  5FD  26  
5FD  "H1'"   "H1'"   H  0  1  N  N  N  15.014  29.626  62.743  -0.803   0.814   1.316  "H1'"   5FD  27  
5FD  HC8     HC8     H  0  1  N  N  N  17.914  32.122  62.147  -0.143  -2.382  -0.592  HC8     5FD  28  
5FD  HC2     HC2     H  0  1  N  N  N  12.805  29.815  58.871   3.688   2.618   1.057  HC2     5FD  29  
5FD  HN2     HN2     H  0  1  N  N  N  15.544  32.656  56.618   5.874  -1.097  -0.433  HN2     5FD  30  
5FD  H1      H1      H  0  1  N  N  N  16.105  33.626  57.806   4.682  -2.225  -0.792  H1      5FD  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5FD  "O2'"  "C2'"   SING  N  N   1  
5FD  "O2'"  HO2     SING  N  N   2  
5FD  "C2'"  "C3'"   SING  N  N   3  
5FD  "C2'"  "C1'"   SING  N  N   4  
5FD  "C2'"  "H2'"   SING  N  N   5  
5FD  "C3'"  "O3'"   SING  N  N   6  
5FD  "C3'"  "C4'"   SING  N  N   7  
5FD  "C3'"  "H3''"  SING  N  N   8  
5FD  "O3'"  HO3     SING  N  N   9  
5FD  "C4'"  "C5'"   SING  N  N  10  
5FD  "C4'"  "O4'"   SING  N  N  11  
5FD  "C4'"  "H4'"   SING  N  N  12  
5FD  "C5'"  F19     SING  N  N  13  
5FD  "C5'"  "H5'1"  SING  N  N  14  
5FD  "C5'"  "H5'2"  SING  N  N  15  
5FD  "O4'"  "C1'"   SING  N  N  16  
5FD  "C1'"  N9      SING  N  N  17  
5FD  "C1'"  "H1'"   SING  N  N  18  
5FD  N9     C8      SING  Y  N  19  
5FD  N9     C4      SING  Y  N  20  
5FD  C8     N7      DOUB  Y  N  21  
5FD  C8     HC8     SING  N  N  22  
5FD  N7     C5      SING  Y  N  23  
5FD  C5     C4      DOUB  Y  N  24  
5FD  C5     C6      SING  Y  N  25  
5FD  C4     N3      SING  Y  N  26  
5FD  N3     C2      DOUB  Y  N  27  
5FD  C2     N1      SING  Y  N  28  
5FD  C2     HC2     SING  N  N  29  
5FD  N1     C6      DOUB  Y  N  30  
5FD  C6     N6      SING  N  N  31  
5FD  HN2    N6      SING  N  N  32  
5FD  N6     H1      SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5FD  SMILES            ACDLabs               12.01  "Nc1ncnc2c1ncn2C1OC(CF)C(O)C1O"  
5FD  InChI             InChI                 1.03   "InChI=1S/C10H12FN5O3/c11-1-4-6(17)7(18)10(19-4)16-3-15-5-8(12)13-2-14-9(5)16/h2-4,6-7,10,17-18H,1H2,(H2,12,13,14)/t4-,6-,7-,10-/m1/s1"  
5FD  InChIKey          InChI                 1.03   QPVLKMICBYRPSX-KQYNXXCUSA-N  
5FD  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CF)[C@@H](O)[C@H]3O"  
5FD  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CF)[CH](O)[CH]3O"  
5FD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CF)O)O)N"  
5FD  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CF)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5FD  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-deoxy-5'-fluoroadenosine"  
5FD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-(fluoranylmethyl)oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5FD  "Create component"    2003-12-16  RCSB  
5FD  "Modify descriptor"   2011-06-04  RCSB  
5FD  "Other modification"  2022-06-06  RCSB  
##
