data_5PD
# 
_chem_comp.id                                    5PD 
_chem_comp.name                                  "(R)-3-hydroxy-4-((3-((2-mercaptoethyl)amino)-3-oxopropyl)amino)-2,2-dimethyl-4-oxobutyl hydrogen phosphonate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H23 N2 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-04 
_chem_comp.pdbx_modified_date                    2016-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.349 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5PD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EJD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5PD C10 C1  C 0 1 N N N 330.089 190.296 281.217 1.220  -2.033 0.490  C10 5PD 1  
5PD C15 C2  C 0 1 N N N 331.943 191.984 283.484 4.437  -1.482 -1.507 C15 5PD 2  
5PD C17 C3  C 0 1 N N N 332.299 189.940 284.265 3.232  -0.037 0.138  C17 5PD 3  
5PD O21 O1  O 0 1 N N N 336.073 189.072 283.404 4.755  2.178  1.585  O21 5PD 4  
5PD P19 P1  P 0 1 N N N 334.836 188.886 284.249 4.075  2.493  0.309  P19 5PD 5  
5PD O20 O2  O 0 1 N N N 335.039 188.899 285.713 5.022  3.439  -0.586 O20 5PD 6  
5PD O18 O3  O 0 1 N N N 333.544 189.675 283.646 3.773  1.128  -0.489 O18 5PD 7  
5PD C14 C4  C 0 1 N N N 331.224 190.682 283.344 3.072  -1.148 -0.902 C14 5PD 8  
5PD C16 C5  C 0 1 N N N 330.126 190.291 284.349 2.124  -0.678 -2.008 C16 5PD 9  
5PD C12 C6  C 0 1 N N R 331.334 189.911 281.992 2.493  -2.395 -0.230 C12 5PD 10 
5PD O13 O4  O 0 1 N N N 331.180 188.460 282.253 3.439  -2.914 0.706  O13 5PD 11 
5PD O11 O5  O 0 1 N N N 329.032 189.673 281.375 1.180  -2.058 1.702  O11 5PD 12 
5PD N09 N1  N 0 1 N N N 329.745 191.271 280.441 0.126  -1.676 -0.213 N09 5PD 13 
5PD C08 C7  C 0 1 N N N 330.383 192.383 279.898 -1.079 -1.224 0.487  C08 5PD 14 
5PD C07 C8  C 0 1 N N N 330.020 192.535 278.431 -2.164 -0.882 -0.535 C07 5PD 15 
5PD C02 C9  C 0 1 N N N 328.752 193.265 278.077 -3.404 -0.417 0.184  C02 5PD 16 
5PD O01 O6  O 0 1 N N N 327.704 192.696 278.223 -3.418 -0.364 1.396  O01 5PD 17 
5PD N03 N2  N 0 1 N N N 328.893 194.468 277.523 -4.497 -0.059 -0.518 N03 5PD 18 
5PD C04 C10 C 0 1 N N N 327.799 195.312 277.117 -5.702 0.393  0.182  C04 5PD 19 
5PD C05 C11 C 0 1 N N N 327.010 194.728 275.991 -6.788 0.735  -0.841 C05 5PD 20 
5PD S06 S1  S 0 1 N N N 326.542 196.015 274.814 -8.280 1.294  0.026  S06 5PD 21 
5PD H1  H1  H 0 1 N N N 331.765 192.396 284.488 5.140  -1.720 -0.709 H1  5PD 22 
5PD H2  H2  H 0 1 N N N 333.022 191.824 283.339 4.339  -2.339 -2.173 H2  5PD 23 
5PD H3  H3  H 0 1 N N N 331.572 192.691 282.727 4.804  -0.624 -2.070 H3  5PD 24 
5PD H4  H4  H 0 1 N N N 332.485 190.571 285.147 3.907  -0.372 0.926  H4  5PD 25 
5PD H5  H5  H 0 1 N N N 331.868 188.980 284.586 2.260  0.200  0.569  H5  5PD 26 
5PD H6  H6  H 0 1 N N N 335.960 189.029 285.904 5.245  4.281  -0.166 H6  5PD 27 
5PD H7  H7  H 0 1 N N N 330.197 190.934 285.239 1.918  -1.506 -2.686 H7  5PD 28 
5PD H8  H8  H 0 1 N N N 329.139 190.419 283.881 1.191  -0.332 -1.564 H8  5PD 29 
5PD H9  H9  H 0 1 N N N 330.258 189.240 284.645 2.589  0.138  -2.561 H9  5PD 30 
5PD H10 H10 H 0 1 N N N 332.261 190.157 281.453 2.280  -3.150 -0.988 H10 5PD 31 
5PD H11 H11 H 0 1 N N N 330.291 188.194 282.051 3.675  -2.295 1.410  H11 5PD 32 
5PD H12 H12 H 0 1 N N N 328.786 191.212 280.163 0.137  -1.717 -1.182 H12 5PD 33 
5PD H13 H13 H 0 1 N N N 331.472 192.258 279.991 -1.436 -2.016 1.145  H13 5PD 34 
5PD H14 H14 H 0 1 N N N 330.069 193.284 280.445 -0.845 -0.338 1.079  H14 5PD 35 
5PD H15 H15 H 0 1 N N N 329.940 191.522 278.010 -1.807 -0.089 -1.193 H15 5PD 36 
5PD H16 H16 H 0 1 N N N 330.849 193.070 277.945 -2.398 -1.767 -1.127 H16 5PD 37 
5PD H17 H17 H 0 1 N N N 329.822 194.809 277.379 -4.486 -0.101 -1.487 H17 5PD 38 
5PD H18 H18 H 0 1 N N N 328.204 196.284 276.797 -6.059 -0.400 0.839  H18 5PD 39 
5PD H19 H19 H 0 1 N N N 327.129 195.459 277.977 -5.468 1.278  0.774  H19 5PD 40 
5PD H20 H20 H 0 1 N N N 326.101 194.256 276.392 -6.431 1.528  -1.498 H20 5PD 41 
5PD H21 H21 H 0 1 N N N 327.620 193.971 275.476 -7.022 -0.150 -1.432 H21 5PD 42 
5PD H22 H22 H 0 1 N N N 325.878 195.339 273.924 -9.134 1.556  -0.980 H22 5PD 43 
5PD H23 H23 H 0 1 N N N 334.489 187.533 283.992 2.852  3.164  0.577  H23 5PD 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5PD S06 C05 SING N N 1  
5PD C05 C04 SING N N 2  
5PD C04 N03 SING N N 3  
5PD N03 C02 SING N N 4  
5PD C02 O01 DOUB N N 5  
5PD C02 C07 SING N N 6  
5PD C07 C08 SING N N 7  
5PD C08 N09 SING N N 8  
5PD N09 C10 SING N N 9  
5PD C10 O11 DOUB N N 10 
5PD C10 C12 SING N N 11 
5PD C12 O13 SING N N 12 
5PD C12 C14 SING N N 13 
5PD C14 C15 SING N N 14 
5PD C14 C17 SING N N 15 
5PD C14 C16 SING N N 16 
5PD O21 P19 DOUB N N 17 
5PD O18 P19 SING N N 18 
5PD O18 C17 SING N N 19 
5PD P19 O20 SING N N 20 
5PD C15 H1  SING N N 21 
5PD C15 H2  SING N N 22 
5PD C15 H3  SING N N 23 
5PD C17 H4  SING N N 24 
5PD C17 H5  SING N N 25 
5PD O20 H6  SING N N 26 
5PD C16 H7  SING N N 27 
5PD C16 H8  SING N N 28 
5PD C16 H9  SING N N 29 
5PD C12 H10 SING N N 30 
5PD O13 H11 SING N N 31 
5PD N09 H12 SING N N 32 
5PD C08 H13 SING N N 33 
5PD C08 H14 SING N N 34 
5PD C07 H15 SING N N 35 
5PD C07 H16 SING N N 36 
5PD N03 H17 SING N N 37 
5PD C04 H18 SING N N 38 
5PD C04 H19 SING N N 39 
5PD C05 H20 SING N N 40 
5PD C05 H21 SING N N 41 
5PD S06 H22 SING N N 42 
5PD P19 H23 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5PD InChI            InChI                1.03  "InChI=1S/C11H23N2O6PS/c1-11(2,7-19-20(17)18)9(15)10(16)13-4-3-8(14)12-5-6-21/h9,15,20-21H,3-7H2,1-2H3,(H,12,14)(H,13,16)(H,17,18)/t9-/m0/s1" 
5PD InChIKey         InChI                1.03  YXOTVSUMWFLVRX-VIFPVBQESA-N                                                                                                                   
5PD SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[PH](O)=O)[C@@H](O)C(=O)NCCC(=O)NCCS"                                                                                                
5PD SMILES           CACTVS               3.385 "CC(C)(CO[PH](O)=O)[CH](O)C(=O)NCCC(=O)NCCS"                                                                                                  
5PD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(C)(COP(=O)O)[C@H](C(=O)NCCC(=O)NCCS)O"                                                                                                    
5PD SMILES           "OpenEye OEToolkits" 2.0.4 "CC(C)(COP(=O)O)C(C(=O)NCCC(=O)NCCS)O"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5PD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(3~{R})-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(2-sulfanylethylamino)propyl]amino]butoxy]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5PD "Create component" 2015-11-04 RCSB 
5PD "Initial release"  2016-10-19 RCSB 
# 
