data_8PD
# 
_chem_comp.id                                    8PD 
_chem_comp.name                                  "(2~{S})-2-(hexadecanoylamino)-4-oxidanyl-butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H39 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-23 
_chem_comp.pdbx_modified_date                    2022-12-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.528 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8PD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7W97 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8PD O21 O1  O 0 1 N N N 18.043 -2.643  57.900 -8.800 -2.226 0.397  O21 8PD 1  
8PD C01 C1  C 0 1 N N N 21.804 -14.472 49.379 13.787 0.197  -0.207 C01 8PD 2  
8PD C02 C2  C 0 1 N N N 20.717 -13.972 48.461 12.516 -0.246 0.521  C02 8PD 3  
8PD C03 C3  C 0 1 N N N 19.876 -12.932 49.152 11.289 0.219  -0.266 C03 8PD 4  
8PD C04 C4  C 0 1 N N N 18.415 -13.176 49.264 10.018 -0.225 0.462  C04 8PD 5  
8PD C05 C5  C 0 1 N N N 17.940 -12.009 50.127 8.791  0.241  -0.325 C05 8PD 6  
8PD C06 C6  C 0 1 N N N 16.868 -11.281 49.375 7.521  -0.203 0.403  C06 8PD 7  
8PD C07 C7  C 0 1 N N N 16.236 -10.362 50.415 6.294  0.262  -0.384 C07 8PD 8  
8PD C08 C8  C 0 1 N N N 15.872 -9.074  49.732 5.023  -0.181 0.343  C08 8PD 9  
8PD C09 C9  C 0 1 N N N 15.002 -8.174  50.626 3.796  0.284  -0.443 C09 8PD 10 
8PD C10 C10 C 0 1 N N N 15.812 -7.449  51.673 2.525  -0.160 0.284  C10 8PD 11 
8PD C11 C11 C 0 1 N N N 14.932 -6.298  52.170 1.298  0.305  -0.502 C11 8PD 12 
8PD C12 C12 C 0 1 N N N 14.253 -6.741  53.441 0.027  -0.138 0.225  C12 8PD 13 
8PD C13 C13 C 0 1 N N N 13.925 -5.480  54.231 -1.199 0.327  -0.562 C13 8PD 14 
8PD C14 C14 C 0 1 N N N 13.371 -5.964  55.550 -2.470 -0.116 0.166  C14 8PD 15 
8PD C15 C15 C 0 1 N N N 12.626 -4.778  56.159 -3.697 0.349  -0.621 C15 8PD 16 
8PD C16 C16 C 0 1 N N N 13.517 -3.623  56.571 -4.949 -0.088 0.096  C16 8PD 17 
8PD N17 N1  N 0 1 N N N 14.754 -3.866  57.145 -6.159 0.212  -0.417 N17 8PD 18 
8PD C18 C17 C 0 1 N N S 15.668 -2.788  57.626 -7.375 -0.212 0.280  C18 8PD 19 
8PD C19 C18 C 0 1 N N N 17.086 -3.389  57.579 -7.717 -1.624 -0.121 C19 8PD 20 
8PD O20 O2  O 0 1 N N N 17.206 -4.594  57.227 -7.016 -2.215 -0.908 O20 8PD 21 
8PD C22 C19 C 0 1 N N N 15.210 -2.451  59.052 -8.530 0.718  -0.097 C22 8PD 22 
8PD C23 C20 C 0 1 N N N 15.844 -1.161  59.605 -8.238 2.128  0.421  C23 8PD 23 
8PD O24 O3  O 0 1 N N N 16.961 -1.652  60.300 -9.317 2.997  0.069  O24 8PD 24 
8PD O25 O4  O 0 1 N N N 13.167 -2.400  56.394 -4.867 -0.710 1.134  O25 8PD 25 
8PD H1  H1  H 0 1 N N N 18.858 -3.127  57.835 -8.978 -3.132 0.109  H1  8PD 26 
8PD H2  H2  H 0 1 N N N 22.406 -15.230 48.856 14.661 -0.134 0.354  H2  8PD 27 
8PD H3  H3  H 0 1 N N N 22.449 -13.632 49.675 13.806 -0.242 -1.204 H3  8PD 28 
8PD H4  H4  H 0 1 N N N 21.350 -14.919 50.275 13.798 1.284  -0.288 H4  8PD 29 
8PD H5  H5  H 0 1 N N N 20.077 -14.816 48.165 12.505 -1.333 0.603  H5  8PD 30 
8PD H6  H6  H 0 1 N N N 21.176 -13.529 47.565 12.496 0.193  1.518  H6  8PD 31 
8PD H7  H7  H 0 1 N N N 20.268 -12.821 50.174 11.300 1.306  -0.348 H7  8PD 32 
8PD H8  H8  H 0 1 N N N 20.008 -11.988 48.604 11.309 -0.221 -1.263 H8  8PD 33 
8PD H9  H9  H 0 1 N N N 17.934 -13.159 48.275 10.007 -1.311 0.543  H9  8PD 34 
8PD H10 H10 H 0 1 N N N 18.211 -14.139 49.754 9.998  0.215  1.459  H10 8PD 35 
8PD H11 H11 H 0 1 N N N 17.537 -12.388 51.078 8.803  1.327  -0.407 H11 8PD 36 
8PD H12 H12 H 0 1 N N N 18.780 -11.329 50.330 8.811  -0.199 -1.322 H12 8PD 37 
8PD H13 H13 H 0 1 N N N 17.300 -10.696 48.549 7.509  -1.290 0.484  H13 8PD 38 
8PD H14 H14 H 0 1 N N N 16.125 -11.986 48.975 7.501  0.237  1.400  H14 8PD 39 
8PD H15 H15 H 0 1 N N N 15.333 -10.833 50.831 6.305  1.349  -0.466 H15 8PD 40 
8PD H16 H16 H 0 1 N N N 16.953 -10.166 51.226 6.313  -0.177 -1.382 H16 8PD 41 
8PD H17 H17 H 0 1 N N N 16.796 -8.534  49.476 5.011  -1.268 0.425  H17 8PD 42 
8PD H18 H18 H 0 1 N N N 15.315 -9.305  48.812 5.003  0.258  1.341  H18 8PD 43 
8PD H19 H19 H 0 1 N N N 14.496 -7.430  49.993 3.807  1.371  -0.525 H19 8PD 44 
8PD H20 H20 H 0 1 N N N 14.250 -8.798  51.131 3.816  -0.156 -1.441 H20 8PD 45 
8PD H21 H21 H 0 1 N N N 16.058 -8.128  52.503 2.514  -1.247 0.366  H21 8PD 46 
8PD H22 H22 H 0 1 N N N 16.741 -7.057  51.233 2.505  0.280  1.281  H22 8PD 47 
8PD H23 H23 H 0 1 N N N 15.554 -5.413  52.369 1.309  1.392  -0.584 H23 8PD 48 
8PD H24 H24 H 0 1 N N N 14.176 -6.052  51.410 1.318  -0.134 -1.500 H24 8PD 49 
8PD H25 H25 H 0 1 N N N 13.330 -7.290  53.205 0.016  -1.225 0.307  H25 8PD 50 
8PD H26 H26 H 0 1 N N N 14.926 -7.388  54.023 0.008  0.301  1.222  H26 8PD 51 
8PD H27 H27 H 0 1 N N N 14.833 -4.880  54.392 -1.188 1.414  -0.643 H27 8PD 52 
8PD H28 H28 H 0 1 N N N 13.176 -4.876  53.698 -1.180 -0.112 -1.559 H28 8PD 53 
8PD H29 H29 H 0 1 N N N 12.681 -6.806  55.388 -2.481 -1.203 0.248  H29 8PD 54 
8PD H30 H30 H 0 1 N N N 14.189 -6.282  56.213 -2.490 0.323  1.163  H30 8PD 55 
8PD H31 H31 H 0 1 N N N 11.904 -4.407  55.417 -3.686 1.436  -0.702 H31 8PD 56 
8PD H32 H32 H 0 1 N N N 12.087 -5.131  57.050 -3.677 -0.091 -1.618 H32 8PD 57 
8PD H33 H33 H 0 1 N N N 15.051 -4.816  57.243 -6.224 0.710  -1.247 H33 8PD 58 
8PD H34 H34 H 0 1 N N N 15.606 -1.899  56.981 -7.211 -0.170 1.357  H34 8PD 59 
8PD H35 H35 H 0 1 N N N 14.117 -2.329  59.048 -8.637 0.744  -1.181 H35 8PD 60 
8PD H36 H36 H 0 1 N N N 15.484 -3.286  59.713 -9.453 0.351  0.351  H36 8PD 61 
8PD H37 H37 H 0 1 N N N 16.146 -0.485  58.792 -8.132 2.102  1.505  H37 8PD 62 
8PD H38 H38 H 0 1 N N N 15.153 -0.636  60.281 -7.315 2.496  -0.026 H38 8PD 63 
8PD H39 H39 H 0 1 N N N 17.436 -0.927  60.690 -9.199 3.910  0.366  H39 8PD 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8PD C02 C03 SING N N 1  
8PD C02 C01 SING N N 2  
8PD C03 C04 SING N N 3  
8PD C04 C05 SING N N 4  
8PD C06 C05 SING N N 5  
8PD C06 C07 SING N N 6  
8PD C08 C07 SING N N 7  
8PD C08 C09 SING N N 8  
8PD C09 C10 SING N N 9  
8PD C10 C11 SING N N 10 
8PD C11 C12 SING N N 11 
8PD C12 C13 SING N N 12 
8PD C13 C14 SING N N 13 
8PD C14 C15 SING N N 14 
8PD C15 C16 SING N N 15 
8PD O25 C16 DOUB N N 16 
8PD C16 N17 SING N N 17 
8PD N17 C18 SING N N 18 
8PD O20 C19 DOUB N N 19 
8PD C19 C18 SING N N 20 
8PD C19 O21 SING N N 21 
8PD C18 C22 SING N N 22 
8PD C22 C23 SING N N 23 
8PD C23 O24 SING N N 24 
8PD O21 H1  SING N N 25 
8PD C01 H2  SING N N 26 
8PD C01 H3  SING N N 27 
8PD C01 H4  SING N N 28 
8PD C02 H5  SING N N 29 
8PD C02 H6  SING N N 30 
8PD C03 H7  SING N N 31 
8PD C03 H8  SING N N 32 
8PD C04 H9  SING N N 33 
8PD C04 H10 SING N N 34 
8PD C05 H11 SING N N 35 
8PD C05 H12 SING N N 36 
8PD C06 H13 SING N N 37 
8PD C06 H14 SING N N 38 
8PD C07 H15 SING N N 39 
8PD C07 H16 SING N N 40 
8PD C08 H17 SING N N 41 
8PD C08 H18 SING N N 42 
8PD C09 H19 SING N N 43 
8PD C09 H20 SING N N 44 
8PD C10 H21 SING N N 45 
8PD C10 H22 SING N N 46 
8PD C11 H23 SING N N 47 
8PD C11 H24 SING N N 48 
8PD C12 H25 SING N N 49 
8PD C12 H26 SING N N 50 
8PD C13 H27 SING N N 51 
8PD C13 H28 SING N N 52 
8PD C14 H29 SING N N 53 
8PD C14 H30 SING N N 54 
8PD C15 H31 SING N N 55 
8PD C15 H32 SING N N 56 
8PD N17 H33 SING N N 57 
8PD C18 H34 SING N N 58 
8PD C22 H35 SING N N 59 
8PD C22 H36 SING N N 60 
8PD C23 H37 SING N N 61 
8PD C23 H38 SING N N 62 
8PD O24 H39 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8PD InChI            InChI                1.03  "InChI=1S/C20H39NO4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(23)21-18(16-17-22)20(24)25/h18,22H,2-17H2,1H3,(H,21,23)(H,24,25)/t18-/m0/s1" 
8PD InChIKey         InChI                1.03  GYSOJFKWYUVNCE-SFHVURJKSA-N                                                                                                              
8PD SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCCCCC(=O)N[C@@H](CCO)C(O)=O"                                                                                                 
8PD SMILES           CACTVS               3.385 "CCCCCCCCCCCCCCCC(=O)N[CH](CCO)C(O)=O"                                                                                                   
8PD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)N[C@@H](CCO)C(=O)O"                                                                                                 
8PD SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)NC(CCO)C(=O)O"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           8PD 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-(hexadecanoylamino)-4-oxidanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8PD "Create component" 2021-12-23 PDBJ 
8PD "Initial release"  2022-12-14 RCSB 
# 
