data_9CD
# 
_chem_comp.id                                    9CD 
_chem_comp.name                                  "2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose" 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C10 H17 N O6" 
_chem_comp.mon_nstd_parent_comp_id               GCS 
_chem_comp.pdbx_synonyms                         
;2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucose; 2-{[(2E)-but-2-enoyl]amino}-2-deoxy-D-glucose;
2-{[(2E)-but-2-enoyl]amino}-2-deoxy-glucose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        247.245 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9CD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VIE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 9CD "2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucose" PDB ? 
2 9CD "2-{[(2E)-but-2-enoyl]amino}-2-deoxy-D-glucose"      PDB ? 
3 9CD "2-{[(2E)-but-2-enoyl]amino}-2-deoxy-glucose"        PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9CD O3   O01 O 0 1 N N N N N N -47.654 70.866 -53.497 0.378  2.633  0.318  O3   9CD 1  
9CD C3   C02 C 0 1 N N R N N N -48.067 70.306 -52.259 0.845  1.409  -0.251 C3   9CD 2  
9CD C4   C03 C 0 1 N N S N N N -49.540 69.908 -52.366 2.249  1.100  0.278  C4   9CD 3  
9CD O4   O04 O 0 1 N N N N N N -50.284 71.108 -52.592 3.154  2.122  -0.144 O4   9CD 4  
9CD C5   C05 C 0 1 N N R N N N -49.928 69.246 -51.029 2.709  -0.251 -0.275 C5   9CD 5  
9CD C6   C06 C 0 1 N N N N N N -51.479 69.099 -50.909 4.086  -0.594 0.297  C6   9CD 6  
9CD O6   O07 O 0 1 N N N N N N -51.832 67.946 -51.528 4.566  -1.797 -0.308 O6   9CD 7  
9CD O5   O08 O 0 1 N N N N N N -49.303 67.999 -51.066 1.771  -1.262 0.100  O5   9CD 8  
9CD C1   C09 C 0 1 N N R N N N -47.865 68.080 -50.908 0.452  -1.051 -0.407 C1   9CD 9  
9CD C2   C10 C 0 1 N N R N N N -47.199 69.040 -52.030 -0.099 0.268  0.141  C2   9CD 10 
9CD N2   N11 N 0 1 N N N N N N -45.890 69.530 -51.748 -1.428 0.516  -0.423 N2   9CD 11 
9CD C12  C12 C 0 1 N N N N N N -44.773 68.893 -52.225 -2.518 -0.023 0.158  C12  9CD 12 
9CD C13  C13 C 0 1 N N N N N N -43.478 69.563 -51.927 -3.852 0.226  -0.409 C13  9CD 13 
9CD C14  C14 C 0 1 N N N N N N -42.628 69.962 -52.889 -4.928 -0.307 0.164  C14  9CD 14 
9CD C15  C15 C 0 1 N N N N N N -41.310 70.700 -52.626 -6.295 -0.052 -0.417 C15  9CD 15 
9CD O16  O16 O 0 1 N N N N N N -44.885 67.832 -52.868 -2.398 -0.716 1.150  O16  9CD 16 
9CD HO3  H1  H 0 1 N Y N N N N -46.739 71.117 -53.442 0.929  3.400  0.109  HO3  9CD 17 
9CD H3   H2  H 0 1 N N N N N N -47.925 71.010 -51.426 0.875  1.500  -1.337 H3   9CD 18 
9CD H4   H3  H 0 1 N N N N N N -49.676 69.191 -53.189 2.227  1.060  1.367  H4   9CD 19 
9CD HO4  H4  H 0 1 N Y N N N N -51.208 70.899 -52.664 4.063  1.991  0.156  HO4  9CD 20 
9CD H5   H5  H 0 1 N N N N N N -49.557 69.860 -50.195 2.770  -0.197 -1.362 H5   9CD 21 
9CD H61  H6  H 0 1 N N N N N N -51.975 69.952 -51.395 4.780  0.220  0.087  H61  9CD 22 
9CD H62  H7  H 0 1 N N N N N N -51.771 69.060 -49.849 4.006  -0.736 1.375  H62  9CD 23 
9CD HO6  H8  H 0 1 N Y N N N N -52.773 67.830 -51.470 5.437  -2.075 0.009  HO6  9CD 24 
9CD H1   H9  H 0 1 N N N N N N -47.657 68.557 -49.939 0.483  -1.008 -1.495 H1   9CD 25 
9CD H2   H11 H 0 1 N N N N N N -47.181 68.471 -52.971 -0.169 0.211  1.228  H2   9CD 26 
9CD HN21 H12 H 0 0 N N N N N N -45.784 70.354 -51.192 -1.523 1.068  -1.215 HN21 9CD 27 
9CD H13  H13 H 0 1 N N N N N N -43.210 69.736 -50.895 -3.958 0.840  -1.291 H13  9CD 28 
9CD H14  H14 H 0 1 N N N N N N -42.891 69.749 -53.915 -4.822 -0.922 1.045  H14  9CD 29 
9CD H15  H15 H 0 1 N N N N N N -40.809 70.909 -53.583 -7.046 -0.565 0.183  H15  9CD 30 
9CD H16  H16 H 0 1 N N N N N N -41.518 71.647 -52.107 -6.497 1.019  -0.413 H16  9CD 31 
9CD H17  H17 H 0 1 N N N N N N -40.658 70.074 -52.000 -6.330 -0.425 -1.441 H17  9CD 32 
9CD O1   O1  O 0 1 N Y N N N N -47.851 66.748 -50.761 -0.394 -2.128 0.003  O1   9CD 33 
9CD HO1  H10 H 0 1 N Y N N N N -48.346 66.509 -49.986 -0.104 -2.996 -0.308 HO1  9CD 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9CD O3  C3   SING N N 1  
9CD C14 C15  SING N N 2  
9CD C14 C13  DOUB N E 3  
9CD O16 C12  DOUB N N 4  
9CD O4  C4   SING N N 5  
9CD C4  C3   SING N N 6  
9CD C4  C5   SING N N 7  
9CD C3  C2   SING N N 8  
9CD C12 C13  SING N N 9  
9CD C12 N2   SING N N 10 
9CD C2  N2   SING N N 11 
9CD C2  C1   SING N N 12 
9CD O6  C6   SING N N 13 
9CD O5  C5   SING N N 14 
9CD O5  C1   SING N N 15 
9CD C5  C6   SING N N 16 
9CD O3  HO3  SING N N 17 
9CD C3  H3   SING N N 18 
9CD C4  H4   SING N N 19 
9CD O4  HO4  SING N N 20 
9CD C5  H5   SING N N 21 
9CD C6  H61  SING N N 22 
9CD C6  H62  SING N N 23 
9CD O6  HO6  SING N N 24 
9CD C1  H1   SING N N 25 
9CD C2  H2   SING N N 26 
9CD N2  HN21 SING N N 27 
9CD C13 H13  SING N N 28 
9CD C14 H14  SING N N 29 
9CD C15 H15  SING N N 30 
9CD C15 H16  SING N N 31 
9CD C15 H17  SING N N 32 
9CD C1  O1   SING N N 33 
9CD O1  HO1  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9CD SMILES           ACDLabs              12.01 "OC1C(C(OC(C1O)CO)O)NC([C@H]=CC)=O"                                                                                                    
9CD InChI            InChI                1.03  "InChI=1S/C10H17NO6/c1-2-3-6(13)11-7-9(15)8(14)5(4-12)17-10(7)16/h2-3,5,7-10,12,14-16H,4H2,1H3,(H,11,13)/b3-2+/t5-,7-,8-,9-,10-/m1/s1" 
9CD InChIKey         InChI                1.03  GANGCWNSYXFAHD-SUZWSAGVSA-N                                                                                                            
9CD SMILES_CANONICAL CACTVS               3.385 "C\C=C\C(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O"                                                                                
9CD SMILES           CACTVS               3.385 "CC=CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O"                                                                                         
9CD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C/C=C/C(=O)N[C@@H]1[C@H]([C@@H]([C@H](OC1O)CO)O)O"                                                                                    
9CD SMILES           "OpenEye OEToolkits" 2.0.6 "CC=CC(=O)NC1C(C(C(OC1O)CO)O)O"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9CD "SYSTEMATIC NAME" ACDLabs              12.01 "2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose"                                             
9CD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(~{E})-~{N}-[(3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]but-2-enamide" 
# 
_pdbx_chem_comp_related.comp_id             9CD 
_pdbx_chem_comp_related.related_comp_id     GCS 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  9CD C3   GCS C3   "Carbohydrate core" 
2  9CD C4   GCS C4   "Carbohydrate core" 
3  9CD C5   GCS C5   "Carbohydrate core" 
4  9CD C6   GCS C6   "Carbohydrate core" 
5  9CD C1   GCS C1   "Carbohydrate core" 
6  9CD C2   GCS C2   "Carbohydrate core" 
7  9CD N2   GCS N2   "Carbohydrate core" 
8  9CD O3   GCS O3   "Carbohydrate core" 
9  9CD O4   GCS O4   "Carbohydrate core" 
10 9CD O6   GCS O6   "Carbohydrate core" 
11 9CD O5   GCS O5   "Carbohydrate core" 
12 9CD O1   GCS O1   "Carbohydrate core" 
13 9CD HO3  GCS HO3  "Carbohydrate core" 
14 9CD HO1  GCS HO1  "Carbohydrate core" 
15 9CD H2   GCS H2   "Carbohydrate core" 
16 9CD HN21 GCS HN21 "Carbohydrate core" 
17 9CD H3   GCS H3   "Carbohydrate core" 
18 9CD H4   GCS H4   "Carbohydrate core" 
19 9CD HO4  GCS HO4  "Carbohydrate core" 
20 9CD H5   GCS H5   "Carbohydrate core" 
21 9CD H61  GCS H61  "Carbohydrate core" 
22 9CD H62  GCS H62  "Carbohydrate core" 
23 9CD HO6  GCS HO6  "Carbohydrate core" 
24 9CD H1   GCS H1   "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
9CD "CARBOHYDRATE ISOMER"                 D        PDB ? 
9CD "CARBOHYDRATE RING"                   pyranose PDB ? 
9CD "CARBOHYDRATE ANOMER"                 beta     PDB ? 
9CD "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9CD "Create component"         2017-04-18 RCSB 
9CD "Initial release"          2017-10-18 RCSB 
9CD "Other modification"       2020-07-03 RCSB 
9CD "Modify parent residue"    2020-07-17 RCSB 
9CD "Modify synonyms"          2020-07-17 RCSB 
9CD "Modify internal type"     2020-07-17 RCSB 
9CD "Modify linking type"      2020-07-17 RCSB 
9CD "Modify atom id"           2020-07-17 RCSB 
9CD "Modify component atom id" 2020-07-17 RCSB 
9CD "Modify leaving atom flag" 2020-07-17 RCSB 
9CD "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 9CD CYS None Carbohydrate "Amino-acid side chain" "Any position" C15 SG ? ? 
2 9CD SER None Carbohydrate "Amino-acid side chain" "Any position" C1  OG ? ? 
# 
