data_9PD
#

_chem_comp.id                                   9PD
_chem_comp.name                                 "Dodecyldimethylphosphine oxide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H31 O P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        APO-12
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-16
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       246.369
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9PD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6WK8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9PD  C01  C1   C  0  1  N  N  N  -13.814  -27.199  -23.101   -9.533   0.561   0.111  C01  9PD   1  
9PD  C02  C2   C  0  1  N  N  N  -14.364  -28.080  -24.250   -8.320  -0.350  -0.087  C02  9PD   2  
9PD  C03  C3   C  0  1  N  N  N  -13.765  -29.495  -24.395   -7.037   0.463   0.097  C03  9PD   3  
9PD  C04  C4   C  0  1  N  N  N  -14.506  -30.448  -23.451   -5.823  -0.447  -0.101  C04  9PD   4  
9PD  C05  C5   C  0  1  N  N  N  -13.975  -31.882  -23.389   -4.540   0.366   0.083  C05  9PD   5  
9PD  C06  C6   C  0  1  N  N  N  -13.988  -32.491  -21.974   -3.326  -0.544  -0.115  C06  9PD   6  
9PD  C07  C7   C  0  1  N  N  N  -12.705  -33.318  -21.746   -2.044   0.269   0.069  C07  9PD   7  
9PD  C08  C8   C  0  1  N  N  N  -12.922  -34.810  -21.463   -0.830  -0.642  -0.129  C08  9PD   8  
9PD  C09  C9   C  0  1  N  N  N  -13.112  -35.689  -22.707    0.453   0.172   0.055  C09  9PD   9  
9PD  C10  C10  C  0  1  N  N  N  -13.491  -37.080  -22.209    1.666  -0.739  -0.143  C10  9PD  10  
9PD  C11  C11  C  0  1  N  N  N  -14.595  -37.738  -23.041    2.950   0.074   0.041  C11  9PD  11  
9PD  C12  C12  C  0  1  N  N  N  -14.010  -38.622  -24.160    4.163  -0.836  -0.157  C12  9PD  12  
9PD  P13  P1   P  0  1  N  N  N  -12.980  -40.080  -23.490    5.692   0.133   0.062  P13  9PD  13  
9PD  C14  C13  C  0  1  N  N  N  -12.515  -41.232  -24.931    7.134  -0.979  -0.026  C14  9PD  14  
9PD  C15  C14  C  0  1  N  N  N  -14.043  -40.935  -22.168    5.810   1.387  -1.256  C15  9PD  15  
9PD  O16  O1   O  0  1  N  N  N  -11.724  -39.589  -22.769    5.666   0.804   1.381  O16  9PD  16  
9PD  H1   H1   H  0  1  N  N  N  -14.322  -26.224  -23.111  -10.447  -0.019  -0.020  H1   9PD  17  
9PD  H2   H2   H  0  1  N  N  N  -13.996  -27.698  -22.138   -9.511   0.982   1.116  H2   9PD  18  
9PD  H3   H3   H  0  1  N  N  N  -12.733  -27.050  -23.239   -9.506   1.367  -0.622  H3   9PD  19  
9PD  H4   H4   H  0  1  N  N  N  -14.184  -27.545  -25.194   -8.347  -1.156   0.646  H4   9PD  20  
9PD  H5   H5   H  0  1  N  N  N  -15.447  -28.192  -24.093   -8.342  -0.771  -1.092  H5   9PD  21  
9PD  H6   H6   H  0  1  N  N  N  -13.880  -29.840  -25.433   -7.009   1.270  -0.636  H6   9PD  22  
9PD  H7   H7   H  0  1  N  N  N  -12.697  -29.472  -24.133   -7.015   0.885   1.102  H7   9PD  23  
9PD  H8   H8   H  0  1  N  N  N  -14.452  -30.026  -22.437   -5.850  -1.253   0.632  H8   9PD  24  
9PD  H9   H9   H  0  1  N  N  N  -15.556  -30.492  -23.775   -5.845  -0.869  -1.106  H9   9PD  25  
9PD  H10  H10  H  0  1  N  N  N  -14.598  -32.511  -24.043   -4.513   1.172  -0.650  H10  9PD  26  
9PD  H11  H11  H  0  1  N  N  N  -12.939  -31.884  -23.758   -4.518   0.788   1.088  H11  9PD  27  
9PD  H12  H12  H  0  1  N  N  N  -14.038  -31.683  -21.230   -3.354  -1.350   0.618  H12  9PD  28  
9PD  H13  H13  H  0  1  N  N  N  -14.867  -33.144  -21.866   -3.349  -0.966  -1.120  H13  9PD  29  
9PD  H14  H14  H  0  1  N  N  N  -12.081  -33.231  -22.648   -2.016   1.075  -0.664  H14  9PD  30  
9PD  H15  H15  H  0  1  N  N  N  -12.171  -32.885  -20.888   -2.022   0.691   1.074  H15  9PD  31  
9PD  H16  H16  H  0  1  N  N  N  -13.819  -34.910  -20.835   -0.857  -1.448   0.604  H16  9PD  32  
9PD  H17  H17  H  0  1  N  N  N  -12.046  -35.183  -20.913   -0.852  -1.063  -1.134  H17  9PD  33  
9PD  H18  H18  H  0  1  N  N  N  -12.177  -35.735  -23.285    0.480   0.978  -0.678  H18  9PD  34  
9PD  H19  H19  H  0  1  N  N  N  -13.914  -35.282  -23.340    0.475   0.593   1.060  H19  9PD  35  
9PD  H20  H20  H  0  1  N  N  N  -13.840  -36.996  -21.169    1.639  -1.545   0.590  H20  9PD  36  
9PD  H21  H21  H  0  1  N  N  N  -12.597  -37.720  -22.245    1.645  -1.161  -1.148  H21  9PD  37  
9PD  H22  H22  H  0  1  N  N  N  -15.217  -36.952  -23.495    2.977   0.881  -0.692  H22  9PD  38  
9PD  H23  H23  H  0  1  N  N  N  -15.216  -38.362  -22.381    2.971   0.496   1.046  H23  9PD  39  
9PD  H24  H24  H  0  1  N  N  N  -13.365  -38.000  -24.798    4.136  -1.642   0.576  H24  9PD  40  
9PD  H25  H25  H  0  1  N  N  N  -14.840  -39.024  -24.760    4.141  -1.258  -1.162  H25  9PD  41  
9PD  H26  H26  H  0  1  N  N  N  -11.920  -42.075  -24.550    7.153  -1.473  -0.998  H26  9PD  42  
9PD  H27  H27  H  0  1  N  N  N  -13.431  -41.614  -25.405    8.048  -0.400   0.105  H27  9PD  43  
9PD  H28  H28  H  0  1  N  N  N  -11.925  -40.673  -25.672    7.063  -1.729   0.762  H28  9PD  44  
9PD  H29  H29  H  0  1  N  N  N  -14.277  -40.220  -21.366    4.948   2.052  -1.203  H29  9PD  45  
9PD  H30  H30  H  0  1  N  N  N  -14.978  -41.293  -22.624    6.724   1.967  -1.125  H30  9PD  46  
9PD  H31  H31  H  0  1  N  N  N  -13.490  -41.788  -21.748    5.829   0.893  -2.227  H31  9PD  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9PD  C14  P13  SING  N  N   1  
9PD  C03  C02  SING  N  N   2  
9PD  C03  C04  SING  N  N   3  
9PD  C02  C01  SING  N  N   4  
9PD  C12  P13  SING  N  N   5  
9PD  C12  C11  SING  N  N   6  
9PD  P13  O16  DOUB  N  N   7  
9PD  P13  C15  SING  N  N   8  
9PD  C04  C05  SING  N  N   9  
9PD  C05  C06  SING  N  N  10  
9PD  C11  C10  SING  N  N  11  
9PD  C09  C10  SING  N  N  12  
9PD  C09  C08  SING  N  N  13  
9PD  C06  C07  SING  N  N  14  
9PD  C07  C08  SING  N  N  15  
9PD  C01  H1   SING  N  N  16  
9PD  C01  H2   SING  N  N  17  
9PD  C01  H3   SING  N  N  18  
9PD  C02  H4   SING  N  N  19  
9PD  C02  H5   SING  N  N  20  
9PD  C03  H6   SING  N  N  21  
9PD  C03  H7   SING  N  N  22  
9PD  C04  H8   SING  N  N  23  
9PD  C04  H9   SING  N  N  24  
9PD  C05  H10  SING  N  N  25  
9PD  C05  H11  SING  N  N  26  
9PD  C06  H12  SING  N  N  27  
9PD  C06  H13  SING  N  N  28  
9PD  C07  H14  SING  N  N  29  
9PD  C07  H15  SING  N  N  30  
9PD  C08  H16  SING  N  N  31  
9PD  C08  H17  SING  N  N  32  
9PD  C09  H18  SING  N  N  33  
9PD  C09  H19  SING  N  N  34  
9PD  C10  H20  SING  N  N  35  
9PD  C10  H21  SING  N  N  36  
9PD  C11  H22  SING  N  N  37  
9PD  C11  H23  SING  N  N  38  
9PD  C12  H24  SING  N  N  39  
9PD  C12  H25  SING  N  N  40  
9PD  C14  H26  SING  N  N  41  
9PD  C14  H27  SING  N  N  42  
9PD  C14  H28  SING  N  N  43  
9PD  C15  H29  SING  N  N  44  
9PD  C15  H30  SING  N  N  45  
9PD  C15  H31  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9PD  SMILES            ACDLabs               12.01  "CCCCCCCCCCCCP(=O)(C)C"  
9PD  InChI             InChI                 1.03   "InChI=1S/C14H31OP/c1-4-5-6-7-8-9-10-11-12-13-14-16(2,3)15/h4-14H2,1-3H3"  
9PD  InChIKey          InChI                 1.03   SIDULKZCBGMXJL-UHFFFAOYSA-N  
9PD  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCC[P](C)(C)=O"  
9PD  SMILES            CACTVS                3.385  "CCCCCCCCCCCC[P](C)(C)=O"  
9PD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCP(=O)(C)C"  
9PD  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCP(=O)(C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9PD  "SYSTEMATIC NAME"  ACDLabs               12.01  "dodecyl(dimethyl)oxo-lambda~5~-phosphane"  
9PD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  1-dimethylphosphoryldodecane  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9PD  "Create component"  2020-04-16  RCSB  
9PD  "Modify name"       2020-04-22  RCSB  
9PD  "Initial release"   2020-10-28  RCSB  
9PD  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9PD
_pdbx_chem_comp_synonyms.name        APO-12
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
