data_AFD
#

_chem_comp.id                                   AFD
_chem_comp.name                                 alpha-D-allopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "alpha-D-allose; D-allose; allose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-08-31
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.156
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AFD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4GJJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AFD  alpha-D-allose  PDB  ?  
2  AFD  D-allose        PDB  ?  
3  AFD  allose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AFD  C1   C1   C  0  1  N  N  S  -28.586  19.290  21.145  -0.843   1.383  -0.261  C1   AFD   1  
AFD  C2   C2   C  0  1  N  N  R  -27.446  19.770  22.052  -1.633   0.194  -0.813  C2   AFD   2  
AFD  C3   C3   C  0  1  N  N  R  -27.132  21.251  21.780  -1.086  -1.100  -0.202  C3   AFD   3  
AFD  C4   C4   C  0  1  N  N  S  -28.244  21.906  20.942   0.411  -1.204  -0.508  C4   AFD   4  
AFD  C5   C5   C  0  1  N  N  R  -29.635  21.474  21.453   1.122   0.040   0.032  C5   AFD   5  
AFD  C6   C6   C  0  1  N  N  N  -30.796  22.069  20.663   2.609  -0.028  -0.322  C6   AFD   6  
AFD  O2   O2   O  0  1  N  N  N  -27.816  19.596  23.414  -3.013   0.337  -0.472  O2   AFD   7  
AFD  O3   O3   O  0  1  N  N  N  -26.970  21.942  23.010  -1.284  -1.082   1.213  O3   AFD   8  
AFD  O4   O4   O  0  1  N  N  N  -28.120  23.324  20.977   0.947  -2.371   0.119  O4   AFD   9  
AFD  O5   O5   O  0  1  N  N  N  -29.798  20.025  21.430   0.545   1.209  -0.553  O5   AFD  10  
AFD  O6   O6   O  0  1  N  N  N  -30.376  22.593  19.409   3.293   1.072   0.281  O6   AFD  11  
AFD  O1   O1   O  0  1  N  Y  N  -28.829  17.941  21.370  -1.026   1.461   1.154  O1   AFD  12  
AFD  H1   H1   H  0  1  N  N  N  -28.291  19.457  20.099  -1.199   2.303  -0.724  H1   AFD  13  
AFD  H2   H2   H  0  1  N  N  N  -26.547  19.177  21.827  -1.527   0.158  -1.897  H2   AFD  14  
AFD  H3   H3   H  0  1  N  N  N  -26.197  21.301  21.203  -1.607  -1.955  -0.632  H3   AFD  15  
AFD  H4   H4   H  0  1  N  N  N  -28.140  21.554  19.905   0.560  -1.269  -1.586  H4   AFD  16  
AFD  H5   H5   H  0  1  N  N  N  -29.727  21.820  22.493   1.008   0.081   1.115  H5   AFD  17  
AFD  H61  H61  H  0  1  N  N  N  -31.248  22.880  21.253   3.029  -0.964   0.047  H61  AFD  18  
AFD  H62  H62  H  0  1  N  N  N  -31.545  21.283  20.486   2.727   0.020  -1.405  H62  AFD  19  
AFD  HO2  HO2  H  0  1  N  Y  N  -27.109  19.894  23.975  -3.423   1.139  -0.823  HO2  AFD  20  
AFD  HO3  HO3  H  0  1  N  Y  N  -26.282  21.529  23.518  -2.211  -1.010   1.480  HO3  AFD  21  
AFD  HO4  HO4  H  0  1  N  Y  N  -27.260  23.575  20.660   0.542  -3.197  -0.177  HO4  AFD  22  
AFD  HO6  HO6  H  0  1  N  Y  N  -31.125  22.953  18.949   4.242   1.093   0.098  HO6  AFD  23  
AFD  HO1  HO1  H  0  1  N  Y  N  -28.041  17.442  21.187  -0.552   2.193   1.573  HO1  AFD  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AFD  O6  C6   SING  N  N   1  
AFD  C6  C5   SING  N  N   2  
AFD  C4  O4   SING  N  N   3  
AFD  C4  C5   SING  N  N   4  
AFD  C4  C3   SING  N  N   5  
AFD  C1  O1   SING  N  N   6  
AFD  C1  O5   SING  N  N   7  
AFD  C1  C2   SING  N  N   8  
AFD  O5  C5   SING  N  N   9  
AFD  C3  C2   SING  N  N  10  
AFD  C3  O3   SING  N  N  11  
AFD  C2  O2   SING  N  N  12  
AFD  C1  H1   SING  N  N  13  
AFD  C2  H2   SING  N  N  14  
AFD  C3  H3   SING  N  N  15  
AFD  C4  H4   SING  N  N  16  
AFD  C5  H5   SING  N  N  17  
AFD  C6  H61  SING  N  N  18  
AFD  C6  H62  SING  N  N  19  
AFD  O2  HO2  SING  N  N  20  
AFD  O3  HO3  SING  N  N  21  
AFD  O4  HO4  SING  N  N  22  
AFD  O6  HO6  SING  N  N  23  
AFD  O1  HO1  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AFD  SMILES            ACDLabs               12.01  "C1(O)OC(C(C(C1O)O)O)CO"  
AFD  InChI             InChI                 1.03   "InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4-,5-,6+/m1/s1"  
AFD  InChIKey          InChI                 1.03   WQZGKKKJIJFFOK-UKFBFLRUSA-N  
AFD  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@H](O)[C@H](O)[C@@H]1O"  
AFD  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O"  
AFD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@H]([C@H]([C@H](O1)O)O)O)O)O"  
AFD  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AFD  "SYSTEMATIC NAME"                      ACDLabs               12.01  alpha-D-allopyranose  
AFD  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "(2S,3R,4R,5S,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol"  
AFD  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DAllpa  
AFD  "COMMON NAME"                          GMML                  1.0    a-D-allopyranose  
AFD  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-Allp  
AFD  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    All  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AFD  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
AFD  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
AFD  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
AFD  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AFD  "Create component"    2012-08-31  PDBJ  
AFD  "Initial release"     2012-12-07  RCSB  
AFD  "Modify atom id"      2017-11-07  RCSB  
AFD  "Other modification"  2019-08-12  RCSB  
AFD  "Other modification"  2019-12-19  RCSB  
AFD  "Other modification"  2020-07-03  RCSB  
AFD  "Modify name"         2020-07-17  RCSB  
AFD  "Modify synonyms"     2020-07-17  RCSB  
##
